RNA id: XM_039804951.1


Basic Information

Item Value
RNA id XM_039804951.1
length 5374
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC120561733
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34419907 ~ 34441093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCATTATTATACACGTTGCAGTCCAAGTCCAGGCAGCCTCTTTTATTCATAACAATTACTGGATCTGCACATGGGGCGTCTATCCTTTTGATGTTTCAGATGGAATcagctttttattttgaattgtgAGTTCAAATAGCCTGGTGGATTCAAAAGCATTTGATCTACTTTGAAGACACAAAATGATCTTCATTACTGCTGAAaaactacattttgttttttatttgtcaatagGTCTACTGAGTGTACCACTGCTTATAGAATGTGACAAAATTAGGCTGGTCGGCGGGCCTTCCAATTGCTCTGGTAGACTTGAGGTCTACCACAATGACAGTTGGGGAACGGTGTGTGATGATCATTGGAGCATTGCCAACGCTGACGTGGTGTGTCGAGAGCTAAACTGTGGGACAGTTCTTGATGCCAAAAACGGCGCCTTTTTTGGAGAGGGACAGAACAGGATCTGGTTGGATGATGTTCAGTGTACTGGTCATGAGCCTTCTGTCCTCAAGTGCCCACAAAGACCAATGGGGGAAAATAACTGTCACCACAGTGAAGACGCGGGGGTTGTCTGTTCAGAATATGTGAGAGTGGTCAACGGAAGCAATCTATGCAGTGGTCGAGTGGAAGTCCACCATGATGGCAACTGGAAACGAGTGTGTAATGACTGGACCAAGGCAGACGCTGACGTGGTGTGCCGAGAGATTAACTGTGGCCCTCCTGTCGATCAGGCTGAAGTGCTATATTTTGGAGAGACACATGACCTGGGTGGCGTCAAACCCAAGTGCTTTGGGAATGAGAGCTCTCTCTCACAGTGCAGACTTCAGGAATTCAAGGAAAGCTGTGTCAGTGCTACTGTTGTCTGTACAAACAAACTACTTCGGCTGAGTAACGGGACTAGTCGGTGCTCTGGCCGAGTGGAAGTCTACCACAATGGACAGTGGGGAACGGTTTGTGATGACGGATGGGGGATGCCAGAAGCAGATGTTGTATGTCGAGAGATGAACTGTGGGAGTGCTCACTCGGTCCAGTACAGGGCGTTTTTTGGCAGAGGTCAGGATCAGATTTGGTTGGACGATGTTGAGTGTGCTGGTCATGAGAAGTCTCTTGCTGACTGCCCTCACAGAGGTTTTGGAAAACACAACTGTGCCCACGGTGAAGATGCTGGTGTTGTATGCTCAGATTCAGTCAGATTGTTCAATGGGACTGACCGCTGCTCTGGCAGAGTGGAGGTCTTCCACAATGGCCAATGGGGGAAAATTTGTAATAACTGGGGCAATGAAGATGCTCAGGTGGTGTGTAATGAACTCAATTGTGGCCCTCCAAAACCAACTCAAGAAAGCTTAAATTTTGGTGACAGTGGACTGAGAGCCTATACAAGTAGATGCTCTGGCAATGTGACCTCTATCTCCCAATGCACACTTCAAGAATTGACAGGGAGATGTGAAGCTGTTTCTCTTTCATGTGGAGGTAAACCACCACTAAGGCTTGTCAATGGCACTGACAGATGTTCTGGTAGAGTGGAGGTTCAGCATAATGACCAGTGGGGAACGGTGTGTGATGACCAGTGGGACATCAAAGATGCTGAGGTGGTGTGCAGAGCCATGGACTGTGGAACAGCTAAGACAGCCAAATCCAGTTCCTTCTTTGGTCAAGGCCAAGGAGCCATCTGGCTGGATGATGTAGGCTGTATCGGTAATGAGACGTCTCTTATGCACTGCCGACATTCCACCCTCGGACAACATGACTGTGGTCATGGGGAAGATGCCGGTGTGGTGTGCTCAGcTAACATTAGACTAATCAATGGGACTGACCAGTGCTCAGGCAGGGTGGAGTTCTACCATGGTGGCCAATGGTCAGCAGCATATAATCTTACCTGGGGGATGAATGAATCTGCAGTGGTGTGCAGAGAGATGAATTGTGGAGATCCTGTCAAGTTGTCAGGTTCATATGGTCAGGGTAGACATTCAGGAGGGTATACGATCAGTTGTAGCGGTAGAGAGAGCTCTCTCACACTGTGCACAGTGAGAGAATACGTCAGGACCGGGCACGATCACTTTGAAGAGGCATCTGTCCAATGTTCAGGTAATGTGAAGTTATCTGATGGGCCCAGTCAATGTGCTGGAAGAGTGGAGTTCTACGACAAAGGCCAGTGGGGGAATGTGTGTGGTGAATCCTGGGATGTGAATGATGCAAATGTGGTGTGCAGACAGCTGAATTGCGGGAGGACTCATAAAATTACCACTGCGGCTGAGTATGGCCATGGTACGGGACAGACCTGGATTGATCAAATTGAATGCAATGGAAAGGAGTCAACACTGAGTCAGTGCCCACAGAGCCCATTTAGATACAAACCTTGCAACACAAGCTCAGTTGCTGGTGTTGTCTGCACAGGAAGTTTGGAGGTCCGGTTGGCTAATGGTAGAGATGAATGCTCTGGCAGAGTAGAGGTCCGTCATGGCAATGTGTGGCAAACGGTTTGTGACACAGACTGGACCCTGAGAAAAGCTGAGGTGGTGTGTGAGCAGCTGGAATGTGGAAAGGCATTGAGCGCTCCTGGCGCTGCCCATTTTGGCCAAGGCAATGGATCAGTAGTGGAGGCTAGCAATTCATGTTTTGACAATGTGACATCTCTTCAGCAATGCTCACTCAAAGGTTTCAGAGGAGCAAGGTGTGGGCACGAACATGATGCTTCTGCTCTATGTGCAGGTAATCCACCACTAAGGCTTGTCAATGGCACTGACAGATGTTCTGGTAGAGTGGAGGTTCAGCATAATGACCAGTGGGGAACGGTGTGTGATGACCAGTGGGACATCAAAGATGCTGAGGTGGTGTGCAGAGCCATGGACTGTGGAACAGCTAAGACAGCCAAATCCAGTTCCTTCTTTGGTCAAGGCCAAGGAGCCATCTGGCTGGATGATGTAGGCTGTATCGGTAATGAGACGTCTCTTATGCACTGCCGACATTCCACCCTCGGACAACATGACTGTGGTCATGGGGAAGATGCCGGTGTGGTGTGCTCAGctAACATTAGACTAATCAATGGGACTGACCAGTGCTCAGGCAGGGTGGAGTTCTACCATGGTGGCCGATGGTCAGCAGCATATAATCTTACCTGGGGGATGACTGAAACTGCAGTGGTGTGCAGAGAGATGAATTGTGGAGATCCTGTCAGGTTCTCAGGGTCATATGGTCAGGGTAGACATTCAGGAGGGTATACGATCAGTTGTAGCGGTAGAGAGAGCTCTCTCACACTGTGCACACTGAGAGAATATGTCAGGACCGGGCAAGATCGCTTTGAAGAGGCATCTGTCAAATGTTCAGGTAATGTGAAGTTGTCTGATGGGTCCAGTCAATGTGCTGGAAGAGTGGAGTTCTACGACAAAGGCCAGTGGGGGAATGTGTGTGGTGAATCCTGGGATGTTAATGATGCAGATGTGGCGTGCAGACAGTTGAACTGCGGGAGGACTCATAAAATTACCACTGCGGCTGAGTATGGCCATGGTACGGGACAGACCTGGATTGATCAAATTGAATGCAATGGAAAGGAGTCAACACTGAGTCAGTGCCCACAGAGAccatttagagacaaaacttgcAACACAAGCTCAGTTGCTGGTGTTGTCTGCACAGGAAGTTTGAATGTCCAGTTGGCTAATGGTAGAGATGAATGCTCTGGCAGAGTAGAGGTCCGTCATGGCAATGTGTGGCAAACGGTTTGTGACACAGACTGGACCCTGAGTAAAGCTGAGGTGGTGTGTGAGCAGCTGGAATGTGGAAAGGCATTGAGCGCTCCTGGCGCTGCCCATTTTGGCCAAGGCAGTGGATCAGTAGTGGAGGCTAGCAATTCATGTTTTGACAATGTGACATCTCTTCAGCAATGCTCACTCAAAGGTTTCAGAGGAGCGAGGTGTGGGCACGAACATGATGCTTCTGCTCTATGTGCAGCACAGATACGGGCGGTTGGCGGCTCAGGTCAATGCTCTGGTAGAGTGGAGATCTTCTATAAAGGCCAGTGGGGAACTGTGTGTGATGATGAGTGGGGAATGAGCAATGCAGATGTGGTATGTAGACAGCTTGGCTGTGGTCATGCCATTTCTGCTCCTGTGAGTGCCCACTTCGGTAGAGGCACTGGTCCAATATGGCTGGATAATGTGAATTGTAGAGGCGAAGAGCCTGCTCTCACACATTGTACGCATCCCGGTTTGGGAGCAAATAACTGCGGGCACGGTGAAGATGCTGGTGTTATCTGTTTAGGTGCGCTACAGAAGCCCCAAATCACTTTCAGTCCGGCTCCGGAGGTAAACTGGGGTGAAAGAGTTGAGATCACCTGCAGTGTAGTAACAGAGCACATGGGTGGGACATTCGTCCTTAAAAAGACTCAAGGAtcatttcaaatgaaaaaaatctcAGAGAACGAAGCTGCAACCTTTATCTTACCTAGAGCGAACTTCAGCCAAAGGGGGTCATACTTCTGTGAATATCAAAAGAAATTACCTAATCAAGTCATCTATTATCCTCAAGGAAATACTGCTGAGCTCTCCGTCATAGTGAAATTGGACAAGCCCAGAATCTCCCTGACATCTCCGCATGAAATGGTGATCTACAGCCCTGACAAAATATCGGTCACCAAAGGCAGCAGCTTCTCCATCACATGCTCCATTCACTCTACATATCCGGGAGGTTTCTTCTATCTGACAAAGTCTAACAAGAGCACAGTCGCTTCACTGTCAGCATTTGGCCACTCTATCTTGTACATGGCCCACTTTGAATTCCCTGCTCTCGATTATACAAACCAAGGAGAGTATAACTGTGTCTACGGGCTTAACATGTCTTCAATGTCCTTCTGTTCTGTTCCCTCCAAGTCACTTCAAGTCACTGTAATTGCAACTTTATCCTCTTCAGTGGTCTCAGGACTAGTGGGTGGGCTGCTGGTGTTGGTACTCGTGCTGGTTATAGGTTACCTGGTCTGGAGAAGAAGAAGGCGAGGTGGTGGTACCATTGTTCAGTTTAGTAACAGGTTTGGAGGAGCAATAATGCAGGACGTGGATGAAAGAATCCACAATACCCAAGTGAATGAGAATGCACAGAGTCGCAGCCCGGAACACAGCACTGCTGATGTTGATAACTCTGTTGAGAGGGTCCCTGAAGACCTGGCTGGGAGAGTGTGTTATGAGCTTGAACCACTCGTTCTCTCTTGATAACAAAAGGCTTCAAGGAATCACCTATGTCATGCAATTTCATTCAATTCAAAGAGTAACATAACACCAAGGTGAaaaatagagctgggcaatatatcgatattatatcgatatcgtgatatgaggctagatattgtcttagaatttggatatcgtaatatgattGTCTTttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104500 lncRNA upstream 75415 34342514 ~ 34345393 (+) True LOC120561758
XR_005639641.1 lncRNA upstream 75578 34342526 ~ 34345230 (+) False LOC120561758
TU104490 lncRNA upstream 96449 34316811 ~ 34324359 (+) True G78180
TU104487 lncRNA upstream 97794 34316811 ~ 34323014 (+) False G78180
TU104495 lncRNA upstream 97794 34316811 ~ 34323014 (+) False G78180
TU104533 lncRNA downstream 27813 34468906 ~ 34469457 (+) False G78195
TU104534 lncRNA downstream 27813 34468906 ~ 34469457 (+) True G78195
XR_005639650.1 lncRNA downstream 61780 34502873 ~ 34505357 (+) True LOC120561766
TU104541 lncRNA downstream 88262 34529355 ~ 34544379 (+) True G78200
TU104566 lncRNA downstream 193662 34634755 ~ 34658151 (+) True G78219
XM_039806542.1 mRNA upstream 332062 34084095 ~ 34088746 (+) True LOC120562692
XM_039806163.1 mRNA upstream 378160 33990542 ~ 34042648 (+) True sh3bp5b
XM_039806470.1 mRNA upstream 484865 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA upstream 484865 33922583 ~ 33935943 (+) False LOC120562646
XM_039806468.1 mRNA upstream 501633 33916999 ~ 33919175 (+) True LOC120562644
XM_039804954.1 mRNA downstream 168817 34609910 ~ 34622583 (+) True nes
XM_039807294.1 mRNA downstream 510959 34952052 ~ 34964798 (+) False hapln2
XM_039807292.1 mRNA downstream 510959 34952052 ~ 34964134 (+) True hapln2
XM_039807293.1 mRNA downstream 510959 34952052 ~ 34963856 (+) False hapln2
XM_039807365.1 mRNA downstream 602128 35043221 ~ 35058363 (+) True rrnad1
TU104420 other upstream 384841 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 516545 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 559696 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 789095 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 789698 33631039 ~ 33631110 (+) True trnap-agg_4
TU104540 other downstream 88262 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 398064 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 747025 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 964282 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1424749 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile