RNA id: XM_039804962.1


Basic Information

Item Value
RNA id XM_039804962.1
length 7300
RNA type mRNA
GC content 0.46
exon number 11
gene id mef2d
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34634741 ~ 34778605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACAGCGCGCTCCCATTGGCCAGGGTCCATGTCAATCGCAAAGCATTGCCACTCAGGATAGATTAGGCACCATTTGCCATAACTAAATAGTTACCTCGTACATCAAGTAGGAAGAATTGGTTTTAATTGGTATCCCACCGCGCTCGGCGGAGagtttagcgctagctagccGTTCGTCTTCGGCGAAACCTTCTGGTGAAACGCGAATGCAACAAAAGTGTGTCGTTGAAATCTCGTCGGCTCGTCAAACAGATGTGGATACACCGCTTCGGGAGCTGCCCAGCTGAGGTGAAGGGGAGGGCATAGGATCCCAGTGCAGCCTGAGTGTGGATGACCTGCCCCCACCTGGAAAACAGGACCATGATCTGAAGAGGGCACAGCACACCAAAACCctgttcttcctctcctccttctccctattttatttttttatatattttttgttttaaatctacGGGGCGACAGCCTCCCTGCCCGGCTGCTTTCCTGACTGAGTCCGCGTGCACGGACAGGACAAACGGAAGGAGACCAGACATTTAAGGAGGAAGACATACAgcgacagcccccccccccccctctcccttgCCCCTCCCACCGCCACACCGGAAACATGGGGAGGAAAAAGATTCAGATCCAGAGGATCACTGACGAACGCAACAGACAGGTGACGTTCACCAAGCGGAAGTTCGGCCTGATGAAGAAGGCGTACGAGCTGAGCGTCCTGTGCGACTGCGAGATCGCCCTCATCATCTTCAACCACTCCAACAAGCTGTTCCAGTACGCCAGCACCGACATGGACAAGGTCCTGCTCAAGTACACTGAGTACAACGAGCCGCACGAGAGCCGAACCAACGCCGACATCATCGAGGCTCTGAACAAGAAAGAGCACCGGGACTCTGAGAGCCCAGACCCCGAGGAGCCCTTCTCCCTCACCCCCCGCACTGaggagaaatacaaaaaaattgaCGAGGAGTTTGATAAAATGATGCAGAACTATAGGCTGTCAtCCACAGTCCCACAGCCCACCTTCTCCATGCCAGTCACCGTGCCAGTATCCAATCAGAACGCGGCGGCGGCGGCCCTCCAGTTCAGCAGCAACCCCGGCGGCGCCCTGGTCACCACCACCTCCTACGTCACCTCCACCCTCACAGACCCCCGCCTCCTGTCGCCACAGCAACCGGCTCTGCAGAGGAACACCGTGTCGCCAGGGTTACCACAGCGACCAGCCAGCGCAGGAGCTCTGTTGGGAGACATGGGGAACTCCAATGGAGCGTGCCCGAGTCCAGTCCCTAACGGTTACATCAGTGCCAGGGCCTCCCCGGGCCTCCTCTCCGTCTCCAACGGCAACAGCCTGGGGAAAGTAGTCCCGGCTAAGTCTCCGCCTCCGCATAGCCCTCAGATGGTCAACAGCCGCAAGCCGGACCTGAGGGTCATCACCTCGCAGAGCGGCAAGAGCCTCATGCAGCTGACAGAGGAAGAGCTGGAGTTGGTGAGTGAGAATGCTCAACGGCTAGGTGGCTCCCAGGTGGTGCAGTCGCTCACCACGCCAGTGGTCTCCGTGGCAACACCCAGTCTCCTGGCGCCGTTCTCCGGCATGCAGACAGCCTACAACACTGAGTACCAGCTGACGAGCGCGGATCTCACGGCGCTCCAGACGTTCACACCACCGGGGCTGGTGCCTGGCAACATGGCTGCCTGGCAACAGCAACCCACAGTCTcccagcaacaacagcagcagcagcagcaacaacagcagcagcagcagcaacaacaacagtccCAGCAGCTGAGCCTGGCGTCGCTCAGTAACTTGGTGCCGGTGGGTCACATACCTCAGGGCGCCGCGCTGACCGTCAACACGAACCCCAACATCAACATAAAGTCTGAACCGGTCTCCCCAAACCGCGACCGCAGCACCCCCAGCTCCACCTGCGGCACCGGGGGAGGGGGAGGCGGCGGTGGAGGCGGCCAGATTCAACTCCAGGGACAAGGTCTGGTGTCGGTGGCCTACCCTGGTTCCCTGCGCCTGGAAGTGGGCGGCCAAGGCCGCTCGCCAGTCGACAGCCTCAGCAGCAACGGCAGCTCGTACGAGGGCAGCGACCGGGACGACGGCGCCCAGGGGCGGGGCGGCGGGGTTCCGGACTTCCTCCACCAGGCCGGTGCCGGGGGCCAGCAGCCCACCATGGTCCTCCTGCGGCCCTCGTCGGCCGAGCCCCAGGAGCAGGACGGGACCAACGTCAAGAGGATGAGACTGGATACCTGGGTCACATGAAGAGACGAGCGGAGAGGGACGGATGGACGGACGGACAGATGgaggatggagatggagatgtGTACTTGTTGCTTGTGTACATGCCCCCATCAGCCCTAATGCCCCTCAATCTCCTTCTTcgtgcattcacacacacacacacacacacatatatatatatatttatacctgCCATCGACCCAGTTCTGTCAAAACAGGAAAAGCTGacctcgcacacacacacacacacacacgcacagatagagagacacaacacgagCATGCTAACACACCGTCATGTCGTCGCACGTGtggacactgacacacacttgTATGGCAATGTGCATACACATTTGAACTCTAATgtactttcacacacacagacactcacacacacaaaaaaaaccccaaaggGGTTGAGCTACCAAACCAGGGACTATttgtcaaaataatttattCAGCTGTATTTGAATAGAAGTGAGTGTTTTGAATCAGGCAACAGTGGCTAGTAAAACTCCAAATGTCGGCCACTTGGACGATTTCTCCCGACATGCTGACAGCCGCCAGCAGAGCAAACAAACACCTtggtttcccagcatgccctgcaTTTGGTTAGCGGCCGGTGGTGTCCTCCCCACTCATGTCCTTCCTGTCCGTAACTGCGCTGCAGCGAGTCAGCGCCGCCAAGTGAGTCCACATCTTTGTACACAGCGGTAACGTTTGCGTTGCTGCCGCTCTAGATTCTCGGGCCCTTTTGCTCTTTTTATAGCGTGGAGTTTTGTCCTTCTGTCTCGACTGTTGATCTTTAGAGTTTTGGATTCGTCTCAGTTTTGAATATGAAGACACTAAAAGACAAACTTGTCTCCGTCCCCAGGCGAGCCCGGCGGCCCAGTCAAAAAGGCCGGCACTTTGGCCCTGTACGAGACTGACGACCCCCCCGGGGCTTTTATTGAAACCGAACCATGCGGACTATAGCTGTAAAACCAGGAACGTGATTTGTTGTCGAGGTAAAAGACTGCTTTTCTTTGAATCAGGGACGAGCTGCAGCAGCTCAACGCCACATGACGCAGATCCTCCTAGTTTTCGTCCACATCTCGTCAACTACAGATGCTGAGAaagatgtgtgtttgtttggtgtgcgtgtgtttgatttttgtgtgtgtgtgcgtgtgtatggtTTGTTACCTCAACTGGTCGTTTTTTAACTAAGTGATTCGGGCAAATGTTCATTCTCAATTTCATCCTCGAACACACACCCGGGATGAAACTATTTTTGTGGAAGCGAGTCATGTTTTGAAGAGATAGCTGATGTTCGGAGGCGAGACCGGTGAGGTACCGTGTATATAAGCAATCTGTAACCTTTGTGGCTTTTGTGTGACAGGGATAAGATGTTTTGAAGATTTTAAAAAATAGATCATATACAAGTATATATTTAAACGGCTTGAGGCGGTAGCAAGGGCAGCTCTGCATCCGGGGCAGGAGGCTACGACACACGACAGGGATTgtatatataaactatatattCGGCAGGTTATCCCTTAACaaaacagacttttaaaaaGCAAATGCGTTGATTCTCAGTGGCTCGGTctcttttgtttattattatttatgcgtgtatatatatataaagtgtaATATGTGGACAAGCCAAGAGAGGGAGCTGTAGAGGCCGAAAGGGAAGACGTAGCCGTGGTGACTCGGACTGTTTAGTGTAAGCAATTGTTGGGACTCTGTCACTGATGGAGCGCACTTTACCCTGACCCCCACCCCTGACACCTTAacacacctgacacacacacacacacactcacactaggGTTGAACTGATATACCTGGCTGCTTTTAAGGCTTTTGTTAAAAATCTGATATTCAGAAAATACAATTCAATGTTTGCACTTTTTATTTAATCCTCCAAATGAATTAATTTATTACTGTacgtcaaccaatcagagctccGTTTTACAACTCCTATCTTCTTATTGTGGCCTGCATGTTTTGAAATTAGGTGAATTAATTTAATGGATCACAGAATAATAAACTGTAAACATTAAAGCAGAAGAAAATTGAATAAGACAACATATTAAAGCAAGACAGTAAATTAATTAACAAGAAGAACaaattaaaatgcaaatgtatcaaaatgtgttaaattatttttagattagataaaatataaaaaaattacaatttaaggtatttttataTTACCTTTCGTTGTATTACAAAGTTATTAATAATGACAGAAATGTGGGCTATGTTAATGCTGATGGCAAGCATTTTTATTTGGAAGTACAACCTATAATATACTGTGTAGCCAAAATACGCTCAGACACAAATGCCCCATTGAAACACATTAAAACTTTGATCCCACTGCCATTAGCCAAGACCCACTATTTTCCACCAGATCAAGCCATGTTCTTATGTTTGCCCTGTGGGGGTTTAAattctgaaaataaattaatatttggTGGTTATCAGGACTGAAGTTGGTTAAAAGATTTAACTcaatgaaagtgaaaaataatattATGGTAGTTTTTTAGCACGAACATCAGAGGCACAAGGGTTAATAATTtatgatattttacttttttaatatcCGCTAAGGAAGTAACCATTGAAAAGAAATCCCCAATTTTGTTATTGGTATTTCCATCCTTTGTATAGGCAACATCAGCTGCCACAGTGTGACtcaaactaaaaatattttAGTTACTTATTTCTCCATTCGTTCTACATTTAGAGTCAAGTGTCTCTTGATGGTCTAAATTCCACCTTTTAAATTTGTTGCAGATAAAATCTTTACTTGTTATTTGGTAATGTTTTTGGCATATCCCAGTATTGAGTATTTGCAGCGTCAGAACAAAGATGGCAGTATTTTCTGTCTCTAACATATCAGTCAAACtctaaagcacacacacacacacacacactatatgaTTAAGCGAGCCAAGGATgtccccttttttattttggacCTTTTCCTCTGGTTAAAAGCCatgtatgtatatttaaagGATCTTCTCCTTCGCCTGTCACTGGTTGGCTGTAGTTTTATATTTCCGAGGGGTTAAAAAAACGACTATGAAGGTAAAATAAATGTGAaggatgtcattttttttttttactaactgGCAAGGGGTGGTTTAGGGTTTAGTGGGTAGATTTGAAAAACATAGCGGTCAAAAGTGCAAattcatgtatttatatattttttcagcCTCCATCCATTTGCTCGTTGAAAGCTTTGGAGGCAGAGTTTGGGTATCGTTTTAGCACTAAGCCGGAGGTTTCAGAACGAGTCTCGATCTTTTAATGACTACCTCCCAAATCCAACGCAGACTTGTCAACTTTGGGTTTCACCACATCCAGCCAGCACATCTTTCTCACGGGCAGGCCCTCTTCACCTCCCTCTCACCctgtcactcactcactctcgttttattttttattttttaatcccaAACACTTCTGTCCCCACTACGAAAGCTGGTCCCCATAACGCTggtatacaaacacacacacacacacacacacacattacttttCTGTTTACTCGGTCCTGTGTCAGCGCTGAAATGACAACACGTCGACAAGTCAAATTATTTTTGGGTCATTTCCATCCTCCCAGCAGCCTCATTACACACTACTCCCATCATCCTCTCCTCGcttcatctttctctctctctccgtctgtcaCTCACTCACTTGCTCATCCACTCCGTGACAAGTCTGAGAGTCAGTATTGCTTTTGCGAGCGTGCGACAGAGTAAATCCCCTCCCCACCTCCCCTGAGTGTTATCACTTTGACTGTTAAGACTGTTGTACCCTGAGCTtcgaacaaaaacaaagaaacctGCGTACGAAGGCTGcgagaaaataaacaaaatggctTCCTTTGCGACACGGGACTCGTGGGAGTTTTTTCTTTGTCACGTTCTCCAGAGCAACACTAGGGGTCGCTGTAATCACAAAACGGAAAGACAATCGTGCTGAGAAATAGTTTTAAGAACCTGCATCCCCCactcctggaaaaaaaaaaaaaaaaagcgactCTTGCTCCTGTATAATGATGTTTAGAAGTCTCACTCACTTTCCAGTGTTAATTTGTGCTGGTGACAGTCTGTTTTTAATTGTTCTCTGAgaattgatattattattattattattattatcatcattaccACAGCTCTCACTGACGGTAGCTGCCATGATGGTATAGAAATCTGCGTTTTTATTTGTGTAGGTTAGGcatcttgttttcattttgaattttattttattatataaaaaatactctataaatatattttttgttttctctttattcaggatttgttttttctttcgttcttcaaaaaaaaaaaaaaagggtgttaCTAATGTTGCACGATTTTTATGACatgaaacaaacaacacaagCGTAGTGCTATTAGTACATGACACGTGTGGACGTGGGCGGAaaccgccacacacacacacacacacacacacacacacacacaccgcttcAATGCTGCAACTTTTGAGTCCAATGTACAAAACGTCTCGGTCCACACATGCTAacgtgggggggtgggggggggggagggtttCAGCGTGACACGTCTAACTTATTTCTGACCAGACACAATGATGTCAATGCATGGGCGAAGAGTGACTCATCTTATAGGACATACAGTGTAATATCGACACGAATATACAtcacacagaaatacatttaagaaaaagaaaaaaaaatggaataaaaaaagtttaaaataaatgatagCTAATATATTGTGTTCGGCtagtctgcttttttttttgttgtaaagatactttttttttttgttgttttttggagAATGATATACAATTTGTGTATATTTTCATAAATAAAGTATGCACTGATATGTTATTACAAATTCTATACtgcttttacaaaaaaaagtgtttgttaTCGTACCAAAGTATCCATTGGTCCCCTCTTCCCCCCTGCCTCCCCTTTTTGCGTATGTTTTACcgtattttatatattaaatagACAAGTTGACCTACACAAA

Function

GO:

id name namespace
GO:0060914 heart formation biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639643.1 lncRNA downstream 75194 34558496 ~ 34559547 (-) True LOC120561760
XR_005639653.1 lncRNA downstream 139982 34493956 ~ 34494759 (-) True LOC120561769
TU104702 lncRNA downstream 165223 34468899 ~ 34469518 (-) True G78318
TU104703 lncRNA downstream 165363 34468899 ~ 34469378 (-) False G78318
XR_005639648.1 lncRNA downstream 170278 34462062 ~ 34464463 (-) True LOC120561765
TU104789 lncRNA upstream 65685 34844289 ~ 34850430 (-) True G78389
XR_005639817.1 lncRNA upstream 90783 34869387 ~ 34888197 (-) True LOC120562743
TU104798 lncRNA upstream 91189 34869793 ~ 34888246 (-) False LOC120562743
TU104808 lncRNA upstream 131754 34910358 ~ 34910573 (-) True G78406
TU104857 lncRNA upstream 248774 35027378 ~ 35027581 (-) True G78446
XM_039804969.1 mRNA downstream 34702 34585627 ~ 34600039 (-) False LOC120561738
XM_039804970.1 mRNA downstream 34703 34585627 ~ 34600038 (-) False LOC120561738
XM_039804966.1 mRNA downstream 34706 34585627 ~ 34600035 (-) True LOC120561738
XM_039804967.1 mRNA downstream 34707 34585627 ~ 34600034 (-) False LOC120561738
XM_039804972.1 mRNA downstream 104688 34517477 ~ 34530053 (-) True LOC120561740
XM_039806770.1 mRNA upstream 29226 34807830 ~ 34809849 (-) True LOC120562852
XM_039806234.1 mRNA upstream 135717 34914321 ~ 34932785 (-) True rhbg
XM_039806235.1 mRNA upstream 135717 34914321 ~ 34931719 (-) False rhbg
XM_039806164.1 mRNA upstream 196896 34975500 ~ 35004333 (-) True bcan
XM_039807368.1 mRNA upstream 255279 35033883 ~ 35043980 (-) True isg20l2
TU104706 other downstream 141546 34492346 ~ 34493195 (-) True G78321
TU104595 other downstream 488445 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 502635 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 1037436 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 2201084 32425397 ~ 32433657 (-) False LOC120561540
TU104838 other upstream 196220 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 233499 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 355060 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 356387 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_360 other upstream 357486 35136090 ~ 35136161 (-) True trnap-cgg_2