RNA id: XM_039804971.1


Basic Information

Item Value
RNA id XM_039804971.1
length 1607
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC120561739
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34369691 ~ 34380293 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAACCATGGCGGAGGAGGAGGTTAACTACGCTTCGGTTGTATTCAAAAGTAAGAAATATCGTCCAACCCAAGCTagaaaggaggaggaaactGTGTATGCTGAAGTGAAGGGGCAGAgtaaaaaaactgaagaaactgCTGACACAAACGCAGGAGTTTTGCTCGACAAGAAAGCAAACAACAGACGTCTCCAGTATCAGCAGCTGGCCTGTTGTTTGGGGATTCTTTGTGTCATTCTGCTGTTGGGCATCATAGCAGTCGTCGTCCTCTACCACCGGTTAAGTCCTGAAAGTGAGCTGATGGCTGCCAATCACAACCTGACAAACCTCAACAACAATCTCATTTTAGCCAATGAAAAGTTGAGGAGGGACAACAACAATCTGACAGTCCAGTTGAGCAACCTGACACAAAACTATACTGTCTCAGAAAGCAAGATCACAAACCTGAATGCAGAGGTCCAGAACCTGAGAGCAGTAAACCAGCAGCTGGAGACACAGAGGAACAACTTAACAGAAGAAATACAAAACATGGAGACAGACTGGAATAAACTCATCATCATTCAAGCTCAGTGGAGCATTGATGCCTACTGCCCCAAAACAAATGACGTTTCAGTGAGAGTGTGTAAAGCTTGTCAGAATGGCTGGTTACCCAAAGAGTCCAAGGCGACCAACTGCTATGCGTATAATAACGCTAAAGCTCCTGATCAGAAAACCTGGGAAGAAGCTCGAGAAAACTGCAGAGGAAAGGGTTCAGATTTGGCTGTTGTACATAATGAAGAGGAAAAGGATGAACTCTATTATTACAGCAAAGGAACTGATGGATACTGGTTTGGCCTGAGAGCTGAAGGTGGGAGATGGAAGTGGATTGATGGAAGTGATCTGACTGTAAGCTACTGGACACCACAACTACCTCCTACTGATGGTCAGTGTGTAATGTCTGTCCAGAACGTAGGATGGAGATCAGTGAGCTGTGCTGAGAAAAAACAATGGATCTGCAAAATGAAGGCTTTATCTGTTTAAACACTGCAGTCAGACTATGCATGATAATATCAACTGGCTTATAAATATCAAACTGTaaagtcttctttttttttttataaaaaggatCAGGCGTTTCATTTAtatagaaaaagagaaaaggaatATTTACAGTGAATTATTTTTCaaagctgtttgtgtgtctcggaataaaaacagacacttagaatttgaatacatttagatATTTGATTATATAGGTATGCTAATGTTAGTCTGTGGAACATACAGTGACTAGACTGAAGGGACACTGTTATCATTGATACCTGTTGAATGGGCTTTTGTTCTGCTTTGTTAGAGATGTGATGCTTATAATTAGTATATCAGCAGATTGATGACAGGGACAGACAGACtgctcagtttcctgtttcctaTGTATCATGGAACATATATTGTTGCTACTCATTGGCCAAAATGGGGGCACTGCATCACTTGTTCTTAACAGAATGTCCTCAGAGCTTTTTGCTTCAGCATGTTaggaacattaaaatgtaaattttttctATTTATCTATATAGAAAGCAAATTCATGTTTTATTACATTGAATAAAAATGCTGCGAAAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104662 lncRNA downstream 29948 34339358 ~ 34339743 (-) False LOC120561748
XR_005639646.1 lncRNA downstream 40741 34325399 ~ 34328950 (-) True LOC120561763
TU104645 lncRNA downstream 46676 34316812 ~ 34323015 (-) False LOC120561737
TU104678 lncRNA upstream 12658 34392951 ~ 34393367 (-) True G78298
XR_005639647.1 lncRNA upstream 65769 34446062 ~ 34446510 (-) True LOC120561764
XR_005639651.1 lncRNA upstream 76453 34456746 ~ 34473775 (-) True LOC120561767
XR_005639649.1 lncRNA upstream 81769 34462062 ~ 34464463 (-) False LOC120561765
XR_005639648.1 lncRNA upstream 81769 34462062 ~ 34464463 (-) True LOC120561765
XM_039804987.1 mRNA downstream 549 34364447 ~ 34369142 (-) True LOC120561754
XM_039804983.1 mRNA downstream 5884 34360056 ~ 34363807 (-) True LOC120561749
XM_039804981.1 mRNA downstream 28710 34339177 ~ 34340981 (-) True LOC120561748
XM_039804965.1 mRNA downstream 49398 34317269 ~ 34320293 (-) True LOC120561737
XM_039804980.1 mRNA downstream 96039 34261526 ~ 34273652 (-) True LOC120561747
XM_039804989.1 mRNA upstream 6119 34386412 ~ 34386929 (-) True LOC120561755
XM_039804984.1 mRNA upstream 102493 34482786 ~ 34485762 (-) True LOC120561750
XM_039804972.1 mRNA upstream 137184 34517477 ~ 34530053 (-) True LOC120561740
XM_039804969.1 mRNA upstream 205334 34585627 ~ 34600039 (-) False LOC120561738
XM_039804970.1 mRNA upstream 205334 34585627 ~ 34600038 (-) False LOC120561738
TU104595 other downstream 223395 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 237585 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 772386 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1936034 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2850655 31516455 ~ 31519036 (-) True G77573
TU104706 other upstream 112053 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 594531 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 631810 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 753371 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 754698 35134991 ~ 35135062 (-) True trnap-ugg_1

Expression Profile