RNA id: XM_039804973.1


Basic Information

Item Value
RNA id XM_039804973.1
length 1523
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC120561742
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34212332 ~ 34219024 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAACCATGGCGGAGGAGGAGGTTAATTACGCTTCGGTTGTATTCAAAAGTAAAAATCATCCTCCACCCCAAGCTagaaaggaggaggaaactGTGTACGCTGAAGTGAAGgtacaaagcaaaacaaacgaACCAACTGCTGACACAAACGCAGGAGTTTTGCTCGTCAAGAAAGCAAACAACAGACGTCTCCAGTATCAGCGGCTGGCCTGTTGTTTGGGGATTCTTTGTGTCATTCTGCTGTTGGGCATCATAGCAGTCATCGTCCTCTACCACCAAAGCAAGATCACAGACCTGACTGCAGACGTCCAGAACCTGAATGCAGAGGTCCAGAACCTGAATGCAGAGGTCCAGAACCTGAAAACACGAAACCTGCAGCTGGAGACACAGAGGAAGAacttaacaaaacaaataaaaaacatgaagaCGAACTGGAATGAGCTCAACGTTAGCCGAGCTCAGTGGAGCATTGATGCCTACTGccccaccaaaacaactagCGCGAGACAGTGTAACGCTTGTCCGATTGGCTGGTTACCCATAGAGTCCCAGGTGAACAACTGCTATGCGTATAataaccctcctcctcctgatcAGAAAACCTGGGAAGAAGCTCGAGAAGACTGCAGAGGAAAGGGTTCAGATCTGGTTGTTGTACATAATGAAAAGGAAAAGAATGCACTGAATACATACAGCGTGGGTAGTTCAGGAACTAATGGATACTGGTTTGGCCTGAGAGCTGAAGGTGGGAGATGGAAGTGGATTGATGGAAGTGATCTGACTGTAAGCTACTGGACACCACAACCTCCTCCTACTGCTACTGACGGTCAGTGTGTAATGTCTGTCCAGACCAATACATGGATATCAGTGAACTGTACTGAGAAAAAACAATGGATCTGCATAAGGAAGGCTTTATCTGTTTAAACCCTCAGTCAGACTGCATGATAATATCAACTGTCTTATAAATATCAAACTATTAAGACTTCTACTTCacaattgaaatgttttttttttctttaataaaaaggATCGGGGGATTTATTTTtatagaaaaagagaaaattaatatttacagtgaaTTATTTTGTAAAGCTGTTTGTGtatcttgtttaaaaaaaagacacttagATTTGAATGCATTTAGATATTTGATTATATAGGTATGCTAATGTAAGTCTGTGAAACATACAGTGACTAGACTGAAGGGACACTGTTATCATTGATACCTGTTGAATGGGCTTTTGTTCTGCTTTGTTAGAGATGTGATGCTTATAATTAGTATATCAGCAGATTGATGACAGGGACAGACAGACtgctcagtttcctgtttcctaTGTATCATGGAACATATATTGTTACTACTCATTGGCCAAAATGGGGGCACTGCATCACTTGTTCTCAACAGAATGTCCTCAGAGCTTTTTTCTTTAGCATGTTAGGAATAttaatgtgtaaaatgttttctatttatctatctagaAGCAAATTCATGTTTTATTACATTGAATAAAAACACTGCGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104597 lncRNA downstream 114742 34096322 ~ 34097590 (-) False LOC120561752
TU104452 lncRNA downstream 116779 34095284 ~ 34095553 (-) False LOC120561752
TU104417 lncRNA downstream 249091 33962752 ~ 33963241 (-) True G78118
TU104409 lncRNA downstream 303447 33906420 ~ 33908885 (-) True G78110
TU104392 lncRNA downstream 327606 33881005 ~ 33884726 (-) True G78097
XR_005639652.1 lncRNA upstream 16190 34235214 ~ 34235852 (-) True LOC120561768
XR_005639644.1 lncRNA upstream 37635 34256659 ~ 34257473 (-) True LOC120561761
TU104629 lncRNA upstream 50371 34269395 ~ 34270001 (-) False LOC120561747
TU104638 lncRNA upstream 51256 34270280 ~ 34271012 (-) False LOC120561747
XR_005639640.1 lncRNA upstream 55215 34274239 ~ 34276133 (-) True LOC120561757
XM_039804985.1 mRNA downstream 23922 34172768 ~ 34188410 (-) True LOC120561751
XM_039804978.1 mRNA downstream 40102 34163795 ~ 34172230 (-) True LOC120561746
XM_039804977.1 mRNA downstream 65423 34144174 ~ 34146909 (-) True LOC120561745
XM_039804976.1 mRNA downstream 79900 34129538 ~ 34132432 (-) True LOC120561744
XM_039804986.1 mRNA downstream 114821 34095251 ~ 34097511 (-) True LOC120561752
XM_039804980.1 mRNA upstream 42502 34261526 ~ 34273652 (-) True LOC120561747
XM_039804979.1 mRNA upstream 42502 34261526 ~ 34267777 (-) False LOC120561747
XM_039804965.1 mRNA upstream 98245 34317269 ~ 34320293 (-) True LOC120561737
XM_039804981.1 mRNA upstream 120153 34339177 ~ 34340981 (-) True LOC120561748
XM_039804983.1 mRNA upstream 141032 34360056 ~ 34363807 (-) True LOC120561749
TU104595 other downstream 66036 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 80226 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 615027 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1778675 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2693296 31516455 ~ 31519036 (-) True G77573
TU104706 other upstream 273322 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 755800 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 793079 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 914640 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 915967 35134991 ~ 35135062 (-) True trnap-ugg_1

Expression Profile