RNA id: XM_039804983.1


Basic Information

Item Value
RNA id XM_039804983.1
length 930
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120561749
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34360056 ~ 34363807 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCATAAACTGAATAAAATAGGGCACAACCTCAAATCAGACCATCACAGTGGAGCAGACGGCCTCCTAACAGCTCTCATACAGGACTGCAGCAGgactttaaacatttgttcaGGATGAACAGAAATCCACAGGAGGAAATTGAGGAAATCGAGGAAGAAGCTAGCTATGGTAATGCACCAGTATGTACTGTGGATAAAGTGGCAGCCCATCCAGACCATAGGTCTCTCTTCTTCACTCAGTCTTTTCCACTGATAGCAGTGTGTTGGCTGATACTGTTAGTCATCATGGGCCTTCGTATCCACTTTACCTCTGTCATTTCTGAAAATGACGCCAAGCTGAGGGCAGAAATCCAGCAGCTGACATCCCAAAACCAGCAGCTTAAGGCACAAAACCAGGAGCTGGagacacaaataaaaaacatgacGACAGTTGATGATTACTGCCCCAAAGAAAATAAGGTTTCAGAGAGACAGTGTAAAGCTTGTCAGGAGGACTGGTTACTCAACGAGTCTAACTGCTATGAGATTCATGATGCTGATCCTTCTAATCAGAAAACCTGGGAAGAAGCTCGAGCAAACTGCAGCGGATATAACGCAGATTTTGTTATTGTACACAGTAAAGAGGAAAAGGATATGATCAATGGTTACAGCTGGGGTAACCAAGATGAGAGTGGATACTGGATTGGCCTGAGAGTTGAAAATGGGAGATGGAAGTGGATTGATGGAAGTGATCTGGCTGTAGACTTCTGGATAGGACCTCCCTTTGACGGTCAGTGTGCAGTTTCTGTCCAGGACGTAGGATGGAGATCAGTGAGCTGTGCTGACAGAAAACGATGGATCTGCAAAAAGAAGGCTTTATGTGTTTAAACACTGCAGTCATATTCTGCATGATAATATCAACTGGCTTATAAACTTAAATCTATGAAAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104662 lncRNA downstream 20313 34339358 ~ 34339743 (-) False LOC120561748
XR_005639646.1 lncRNA downstream 31106 34325399 ~ 34328950 (-) True LOC120561763
TU104645 lncRNA downstream 37041 34316812 ~ 34323015 (-) False LOC120561737
TU104649 lncRNA downstream 37041 34316812 ~ 34323015 (-) False LOC120561737
TU104655 lncRNA downstream 37041 34316812 ~ 34323015 (-) False LOC120561737
TU104678 lncRNA upstream 29144 34392951 ~ 34393367 (-) True G78298
XR_005639647.1 lncRNA upstream 82255 34446062 ~ 34446510 (-) True LOC120561764
XR_005639651.1 lncRNA upstream 92939 34456746 ~ 34473775 (-) True LOC120561767
XR_005639649.1 lncRNA upstream 98255 34462062 ~ 34464463 (-) False LOC120561765
XR_005639648.1 lncRNA upstream 98255 34462062 ~ 34464463 (-) True LOC120561765
XM_039804981.1 mRNA downstream 19075 34339177 ~ 34340981 (-) True LOC120561748
XM_039804965.1 mRNA downstream 39763 34317269 ~ 34320293 (-) True LOC120561737
XM_039804980.1 mRNA downstream 86404 34261526 ~ 34273652 (-) True LOC120561747
XM_039804979.1 mRNA downstream 92279 34261526 ~ 34267777 (-) False LOC120561747
XM_039804973.1 mRNA downstream 141032 34212332 ~ 34219024 (-) True LOC120561742
XM_039804987.1 mRNA upstream 640 34364447 ~ 34369142 (-) True LOC120561754
XM_039804971.1 mRNA upstream 5884 34369691 ~ 34380293 (-) True LOC120561739
XM_039804989.1 mRNA upstream 22605 34386412 ~ 34386929 (-) True LOC120561755
XM_039804984.1 mRNA upstream 118979 34482786 ~ 34485762 (-) True LOC120561750
XM_039804972.1 mRNA upstream 153670 34517477 ~ 34530053 (-) True LOC120561740
TU104595 other downstream 213760 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 227950 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 762751 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1926399 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2841020 31516455 ~ 31519036 (-) True G77573
TU104706 other upstream 128539 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 611017 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 648296 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 769857 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 771184 35134991 ~ 35135062 (-) True trnap-ugg_1

Expression Profile