RNA id: XM_039804998.1


Basic Information

Item Value
RNA id XM_039804998.1
length 2573
RNA type mRNA
GC content 0.52
exon number 15
gene id sdha
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12555942 ~ 12567664 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTATCCTCCACCGTAGCTCAGAATAGGTCCTTCAACTGACAACATGGCGAGTGTCCGGGCTGCCTCCCGTCTCCTCTCTAAGAGGGTATTATCTAAAACTAAATCAGTCCCTGCTGCTGCAGTTCAGGGATCCAGGAATTTTCACTTCTCCATCTATGGCAAGAAAAGTGCCAAAATATCAGATGATATTTCTACTCAGTACCCAGTAGTGGATCATGAATTTGATGCTGTGGTGGTCGGAGCTGGAGGAGCAGGACTTAGGGCAGCCTTTGGCCTGTCCGAGGCTGGCTTCAACACTGCCTGCGTTACCAAGCTTTTCCCCACCAGGTCTCACACTGTCGCTGCACAGGGTGGGATCAATGCAGCTCTGGGCAACATGGAGGGTGATGACTGGAGGTGGCATTTCTATGACACAGTtaagggatctgattggctgggagACCAGGACGCTATCCACTACATGACCGAGCAGGCTCCTGCAGCCGTAGTGGAGCTGGAGAACTTTGGCATGCCCTTCAGCCGCACTGAAGATGGGAAGATCTACCAGAGGGCCTTTGGCGGTCAGAGTCTCAAGTTTGGAAAAGGAGGCCAGGCCCACCGCTGCTGCTGCGTAGCAGACAGGACAGGGCACTCACTGCTGCATACACTTTATGGACGGTCGCTTCGTTACGACACCAGTTACTTTGTGGAGTACTTTGCCCTGGACCTGCTGATGGAAAACGGAGAGTGTAAAGGAGTGATCGCTCTCTGCATGGAGGACGGCTCTATTCATCGCTTCAGAGCCCAGAATACGGTCATTGCTACTGGGGGTTATGGAAGAACCTTTTTCAGCTGCACATCTGCCCACACTAGTACAGGAGATGGAAATGCAATGGTAACCAGAGCTGGCCTGCCCTGCCAGGATTTGGAGTTTGTACAGTTCCATCCCACTGGGATCTACGGAGCTGGTTGTCTGATCACAGAGGGTTGCCGTGGTGAGGGAGGGATCCTGATCAACAGTGAGGGCGAGCGCTTCATGGAGCGCTACGCACCCAACGCCAAAGACCTAGCCTCCAGAGACGTGGTGTCCCGCTCCATGACCATAGAGATCAGAGAGGGCAGGGGAGTTGGTCCAGAGAAGGACCACGTGCACCTGCAGCTTCACCACCTGCCTCCCCAGCAGCTGGCCAGCCGGCTGCCCGGTATCTCAGAGACGGCCATGATCTTCGCTGGAGTCGACGTCACTAAAGAGCCCATCCCTGTCCTGCCCACCGTTCACTACAACATGGGGGGAATACCCACAAACTACAAGGGACAGGTGATCACTCATACCAACGGAAACGACAATGTGGTTCCTGGACTGTATGCCTGCGGAGAGTCGGCGTGTGCCAGTGTCCACGGTGCTAACCGGCTGGGCGCTAACTCTCTGCTGGACCTGGTGGTGTTCGGCAGAGCCTGCGCCCTCACCATCGCCGAGGAGCACAAACCTGgAGAGAAACTGTCCCCTCTGGCGCCCAGTGCAGGAGAGGAGTCCGTGGCCAACCTGGACAAGCTGAGGTTTGCCAACGGAAGTCTGAGGACCTCCGAGATCAGGCTCAACATGCAGaagACCATGCAGGCCCACGCTGCAGTGTTCCGTACCGGCCCTGTTTTGAAGGAGGGATGCGAAAAGATGGACGACATTTACCAGACCCTGGGTGACATCAAGACCTTTGACAGAGgcATTGTGTGGAACACAGACCTGGTGGAAAGTCTGGAGCTGCAGAATCTGATGCTGAACGCCGTCCAGACCATCCACGGTGCTgagcagagaaaggagagcaggGGAGCCCACGCCAGAGAGGACTTCAAGGACCGTGTTGATGAGTACGACTACGCAAAGCCCCTGCAGGGTCAGGAGAAGAAGCCCTTCGAGCAGCACTGGAGGAAACACACTATGTCCTACGTCGACCCTAAGACTGGAAAGGTGACCCTGGAGTACCGTCCCGTTATTGACCATTCTCTGGATGAACAGGACTGTGCCCATGTCCCTCCTGCCATCCGCTCCTACTAAGAtctcctttccctctctcccttctcctctCACATTCAAGTCACTCATTTATCTGCTATTTATAAAGATCACTTTCCTGTAATAGACATTTTGAGACAAACTGTGCTTATGGTTGCGCATGTGTATCCATTTAGAACAGTTGAATACAAAACTGTCTTGACTTTAAACTCCATTTGTCTCACCTTCCTGTATTCTGTGTGTTGCCTTGATATAATCTGTGTGCAGCAGATAGATTTCAACACGggtcttgtgtgtgtatatacagtattatgAGGCACTCAAGACAAGTGGGTGACTTTTCAGTCCCTATCTGAAGAACAAAAGCATAGTTAACATGCGGTTCACCGCTTTGCTTTCTGTAATGACACTCTAATTTACAAGTCTTTAATTATAACTTCTCTCCTTTTGCTTTCTGAAGTGAAGAGATGGTAGAAATTATTGCAATTTGAAATAGACTCGTCGCCGACAAGCCACAGCGTGAGgttttaaacatgtaaatattgCAGAAATATACAATAAACATATCTTGTTGAAGCATCA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0022900 electron transport chain biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96221 lncRNA upstream 15391 12537310 ~ 12540551 (+) True G72018
TU96209 lncRNA upstream 35937 12518663 ~ 12520005 (+) True G72006
TU96186 lncRNA upstream 68077 12487637 ~ 12487865 (+) True G71989
TU96184 lncRNA upstream 69185 12486475 ~ 12486757 (+) True G71987
XR_005639635.1 lncRNA upstream 184113 12370724 ~ 12371829 (+) True LOC120561687
TU96237 lncRNA downstream 29786 12594584 ~ 12596659 (+) True G72028
TU96245 lncRNA downstream 74516 12639314 ~ 12639789 (+) True G72036
TU96322 lncRNA downstream 153763 12718561 ~ 12729153 (+) False LOC120563165
XR_005639745.1 lncRNA downstream 196255 12761053 ~ 12770584 (+) False LOC120562335
TU96341 lncRNA downstream 213432 12778230 ~ 12778442 (+) True G72117
XM_039804997.1 mRNA upstream 5984 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804996.1 mRNA upstream 9469 12544496 ~ 12546473 (+) True mrpl32
XM_039805266.1 mRNA upstream 71030 12478898 ~ 12484912 (+) True LOC120561925
XM_039806900.1 mRNA upstream 79378 12465949 ~ 12476564 (+) False tbc1d31
XM_039804714.1 mRNA downstream 77141 12641939 ~ 12649833 (+) True LOC120561578
XM_039804718.1 mRNA downstream 94718 12659516 ~ 12676990 (+) True hpn
XM_039804720.1 mRNA downstream 94718 12659516 ~ 12676990 (+) False hpn
XM_039804717.1 mRNA downstream 94719 12659517 ~ 12676990 (+) False hpn
XM_039804719.1 mRNA downstream 94719 12659517 ~ 12676990 (+) False hpn
TU96107 other upstream 846433 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 939700 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 939700 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1734442 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1734525 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 196019 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 560136 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 903429 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1568813 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1611051 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile