RNA id: XM_039805006.1


Basic Information

Item Value
RNA id XM_039805006.1
length 3019
RNA type mRNA
GC content 0.44
exon number 11
gene id rxrbb
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19328950 ~ 19339714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGAGACATTTTGACTCCAGGGATACTGGCTGGCTCACCGAGCCACCATGGCCTGTAAACAACAGCGTCAAGTTGAAGTAAACTGGATGTGAGTGTCGGCTTATTGTCTGGCGCTGGTCTCGTTAAAACAAGTACACTGAATAGGTTTTCAACAATGCGTCGAAGGTGTGTCTGATTGATATCCTTCAGACGGGACCGCCTCCTCTCCACTGGGTAGCTTACTAGCCATGTCCTCACAGCAGCCCAACAGTTCAGCATCCAACAGCCCCACCAGCATCTTGGGTTCTCCTTTCTCAGTTATCAGTCCCTCACTTAACTCTCCAGTGGTCTCACCCTCTCTGGGATTTGGACCCATCAGCAACAGTCAGATCTCGTCTTCAGCACCTATATCAGGGATGCACTCAATCAGCAGCTCAGAAGATATCAAGCCTCCGTTTGGCCTGAGGCCCATGCCAGCTCACAGCCCTGGAATAATGTTGTCTCAGAAACGCATGTGTGTCATCTGTGGAGACCGCTCTTCTGGCAAGCACTATGGAGTGTACAGCTGTGAGGGTTGCAAAGGTTTCTTCAAACGAACTGTTCGCAAAGACCTTAGCTATACCTGCAGGGATAACAAAGAGTGCCTGGTCGACAAACGCCAGCGCAATCGCTGCCAGTACTGCCGCTACCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCGGTCCAGGAGGAGCGCCAGAGGAACCGAGAGCGTGAAGGAGAGCTCGAGTTCAGTGTCGGCGTGAATGAGGAGATGCCTGTGGAGAAGATTTTAGAGGCAGAGACGGCTGTGGAGCAGAAGACTGAACTTCACTCTGATGGCGGTTCTGCAGGCAACTCTCCCCATGATGCAGTTACCAACATCTGTCAGACTGCAGACAAACAGCTGTTTGCCTTGGTGGAGTGGGCAAAGAGAATCCCTCACTTCTCTGAACTGCCCCTCGATGACCAGGTCATCCTCCTGCGTGCAGGCTGGAATGAACTCCTCATTGCTTCATTCTCCCATCGCTCCATTGGTTTGAAGGATGGAGTTCTCCTGGCCTCTGAGCTGCAGCGCGACAATGCACACAGTGCAGGAGTTGGAGCCATTTTTGACAGGGAGAGTGTGCAGAGTGCAGAGGTCGGTGCCATATTTGACAGGGTCCTTACAGAGCTCGTCAATAAAATGAGAGATATGCAAATGGACAAAGCAGAGCTGGGCTGCCTCCGAGCCATCGTCCTCTTCAACCCAGATGCTAAAGGGCTTTCCAACACCGGTGAGGTGGAGCTCCTTAGAGAAAAGGTCTATGCATCATTGGAAGCGTACTGCAAACAGAAATACCCAGAGCAGCAGGGAAGGTTTGCTAAGCTCCTTCTTCGACTGCCAGCTCTGCGATCTATTGGCTTGAAGTGCTTGGAGCATCTCTTCTTCTTCAAGCTTATCGGTGACACACCTATTGACACTTTCCTCATGGAAATGCTTGAAGCTCCCCATCAGTTGTCTTAGATAGGAAACGCGTACTGTGGTTAGGTTTAGATAGCTGAAGTCTGGGAAGCTGGAGTGGGACTGGAGTGGCACTTTAAGTTCTTTGAAGATTTGTCAATTTGTCTCACTGCTGTCTGGGTTACACTATTTTAGTGCAGCACAGATTTGCTCTTTAGACCAAACCCAAGGCTTGGCATGATCTACAAGCTGGTGCTATATGTTGAAATAACTTCATGAGTAACTaagtatttttaaaaatgtaaacatttacatATTTCTCTCACAGGAACTATAATTTgggtatacatttttatataagcTTTTTAGACCTCTTAAACATCAAGCTTCAGTTGTTTCTCCAACTGAACTGATCCCCAAAACCTATTTTTTAAAAGGAAGGCATCCTGAATCATGTGTATGCATTAAGGACGTAGTCTTCTTTTTATAATTTGTAATTCAAGCCAGCTCTAAAAGAATATAGTTGTCACCGGGAACTGTGTCCAACAACAGCTCTGAGTTTACTTGTATCCATGGCAGGAGATTAATTCCTAACAGTGACCCTGCGATAGAAGACAAGTCAGCGGTTGAAAACTGTCAGGTCGGACTTGTCTGTGTTAATTGAGGATCAGCTTTATGTGTCTGGTAATACACAATTAGTGTTGTTTACTTCTTTGCCATTTTATAAATCTAATCACTTTGTGGTTAACGATTAAACTGCACTGCACACTTGCTATGTACTATTTCTAAAACACTTTTAATAAACACCTGACCTTTAATAGTCAGGCGTTTTGTCTTTTGGTGCTATTTCAGTAATAATTTGACATTATTGGTGCAGATGCACACCAAACCACAAACCTAAGAAAAATATGCAAAACTGAAAATCCCTTTTGttaatttttgttaaaaaaaatgtagcaatataaaatataaaccgCGTAAGAGCTTTCTGCCTGTCAGTCATTCAGGGGTTTTACAAAGTAAATCATGTCTGGTGGAAAGGGAATACTCCATTTTGTAATTTATCTATACAATTGAAAGGTACTGTGCAAAAGTAATTGTTCAGGGAAAATGTATATTGATAAATTTGAGTTATGATCAGGATATACAAATTATATAATTCTTAATATGTGCCcttgtttttagttttcagCTAGTATAAAGCAGAACATGTCTTGGGTTGCACTGGATTTGCTGAGACTGTTTCagctgatttttattttgttttgttctttttcttttatgctCAATTGTTCTTTTCCAAACTTTCCCCCCCTTTTTGTAGGTAGCTGTCTTGTTCATCGTTATGTTTCTGCAACATATTAAAAAGCAAACCATAATCACATTTAGATCCATAACACCTGTGGACGTATAGGAATTTTAAACAAGACCAAATGGGGTCTGTGTGATGGCCACGTGTTAACCCCAGATGAGCTGTATTGGTGAGCTTGTCATCAACCTCTATATGCTCTTGAACATAAAGTGACTTGAAGCATGGGTTGTGTGGACTGAAAATAAAGAGGCTTAAGTTTtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98410 lncRNA upstream 8902 19319438 ~ 19320048 (+) True G73606
TU98390 lncRNA upstream 52434 19272727 ~ 19276516 (+) True G73586
TU98350 lncRNA upstream 137331 19190020 ~ 19191619 (+) False hcst
XR_005639801.1 lncRNA upstream 166146 19160821 ~ 19162804 (+) False LOC120562631
TU98344 lncRNA upstream 166162 19159781 ~ 19162788 (+) False LOC120562631
TU98557 lncRNA downstream 112069 19451783 ~ 19452180 (+) False si:ch211-254p10.2
XR_005639814.1 lncRNA downstream 114055 19453769 ~ 19456616 (+) True LOC120562732
XR_005639810.1 lncRNA downstream 274789 19614503 ~ 19625611 (+) True LOC120562701
TU98640 lncRNA downstream 295159 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA downstream 295159 19634873 ~ 19636882 (+) False G73776
XM_039807291.1 mRNA upstream 48328 19278315 ~ 19280622 (+) True LOC120563155
XM_039806930.1 mRNA upstream 59181 19247004 ~ 19269769 (+) False LOC120562959
XM_039804704.1 mRNA downstream 94976 19434690 ~ 19440233 (+) True slc6a19b
XM_039804777.1 mRNA downstream 101123 19440837 ~ 19446117 (+) True LOC120561621
XM_039804775.1 mRNA downstream 107453 19447167 ~ 19453283 (+) True si:ch211-254p10.2
XM_039806598.1 mRNA downstream 119841 19459555 ~ 19477316 (+) True LOC120562733
XM_039806599.1 mRNA downstream 126020 19465734 ~ 19477315 (+) False LOC120562733
TU98340 other upstream 169955 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 169955 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 582275 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 675313 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 691643 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 307261 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1668319 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2063413 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2259341 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2429834 21769548 ~ 21770286 (+) True G74633

Expression Profile