RNA id: XM_039805016.1


Basic Information

Item Value
RNA id XM_039805016.1
length 2152
RNA type mRNA
GC content 0.48
exon number 14
gene id ubxn11
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17456643 ~ 17461118 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtatgtgtgtgtgacacaaacAAACCGAGAGATGACAGCGACCTTCTGCGGATGAAACAGGAAGTACCCAGCCATCACGTCATTCTACAATATCAGCTGCACGCTGCACGCTCTGCGTTGCTAATAACAACGGACTCCAaacaaactggaaaaaaaaacctcGGGTCACCCTATGAAGAGGCGCCGCCTGTTAATATTCGAGCTAGTTTGGGATATTTATTCTTCTAGTTCACTTGCAGTGCCTAACCTGACTCAGGTAAAATGAGCTCACCTTTGTCGATGCTGAAGAAAACGAGGCGCGCTCCACTGCAGGGCCCTCTGGATGACCAACGGGGCAGACAAAGCGTGCCTTTCAGGAGGAATCTGTTCAAAGAATTTCAGGCTACATTggctgatgatgataatgatgatgatgatgatgaatccTCTGATCTAAATCCTCCCCTGACATCTCACACTCCAGCTAATGATGCCGCCACTTCAAAGTCAAAAGCCCCTTTGAAGAAAGGTGCTCCACCAAGCGACTTTGAGCTAATGTCTGCCATGATGCAGCGATTGAGCCTGCTGGAGAAAACAGTGAAGAGCCAAGCACAGGAGATCAAGCGCAAGGATACAAGGATTTCTGTCTTGGAGAAAAAACAGATACTTCTGAatacatcagAGAGTACCCACGATCTGAGTGGCAGAGACGGCCTTAAAAGAAGGTGCCAACAACTGCAGAATCAAAGCTTTCTGAATGACTATGGTTTGATCTGGGTGGGAGACGGGGAGAGCAGTGACTCTGCTGAAAGGGAGCAGCCACGTAACTTAGAGAGAGGCCTCTGGCAGCCAGATGGCTCTGTGATCAGGAGCTTCCACATGAACTTTGACCTGGTGCTGCAGAGGATCAAGGAGCTGAACATCCTGGCAGGGGAGGGAGAGTGTTTTGTGCAGTCGACAGCCACTAGGGGACAGTTGGCAAAAAAGGATCTTATTCAACTGAGTCTCTATAGCAACGGCATTGTCATGTTTGACGGTCCTTTCCGCTCTTATCAGGAGCACAGCACCCAGCGGTGCATGCAAGATCTGATGGACGGGTATTTTCCATCTGAGCTTCAAGAAAGATTTCCAGATGGTGTGCCTTTTGagGTTCATGACAGACGAGATGAGGACTTCATCGTACCGTGGAATAAGTTTCCTGGCGAAGGACAGGCTGTTCGTGGGAAGAAAGATGAATCATTAAATGCCGTCAGCTCTCCATTACCTGGCAAGAAGTTGAGCATGGATCGGTTCCTGAGCAGGTTACCAAAGGTGGTGGTGAAGGCTGGTCGTGTGATTGATATCAGGGACTCAGTGAGGGCTGCCCTGCTGGATTCATCTGATGCCCGGAGAAGCAACTCAGTGATCCTCATAGACACGCCGGCACTGCAAGTGATAAAAAAGagACTGCAGACGATCAGCCCTGACAGGCCTTCGTCTACCTGTGATGTCATCACACTCAAGATGAAGTCAGAAGATGGGAATCATACTTACATTCTGAAAATGTTCTCCTCAGAAACATTCGGCCACCTGCGGCAACATCTGGACAAACACAGAGGGGGTGGTCTCCCTGGTTACGACATCATCAGTGCTTACCCACGGTGCTGCTACGATGATGACCGCCAGACGTTCCAGTCATGTGGACTAACGACTAATGCTACTCTGCTGCTGCGAAAGAAGCaacaataaaatgaactttttataaaaaatgttagGCATCAGCCTTCTTCCCAGCACACATTTTGActcgtcatagtaggaaaagcacagcggTAACTAATATCcggcatgcacaataccaggaccctgaccCCCCATTATATGCCTGGGATCATTTTTATGTTACGTAACATGAGGGCAGGGATTGCTGTGCCTCTAAAAAACGGAGTTGGTGGTCCACCgtgactgaatgaatgtaacCGATAGCGGAAACACTACATTTTATAACGAGGTGGTCATGGTCATGGTCGATACCCGATTGGCTTAATAAGATACATTTTACGGCCGATACCAATCCGGCCTATCGAGTCGCTGCATCCCAAGCTATTGAAAGCTAGTACTCGTGGTTTTCTGCACAGAAGGGATGAATATACTGTCtatcaaaattaaataaacaaattaaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97549 lncRNA upstream 53019 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 390735 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 464657 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 493806 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 725602 16730837 ~ 16731044 (+) True G72852
XR_005639682.1 lncRNA downstream 39471 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 462832 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 653597 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 663876 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 663876 18124994 ~ 18126954 (+) False G73230
XM_039805007.1 mRNA upstream 11452 17439093 ~ 17445194 (+) True cdcp1a
XM_039805008.1 mRNA upstream 19842 17435174 ~ 17436804 (+) True LOC120561781
XM_039806677.1 mRNA upstream 293948 17149825 ~ 17162698 (+) False mrpl13
XM_039806676.1 mRNA upstream 293948 17151882 ~ 17162698 (+) True mrpl13
XM_039806666.1 mRNA upstream 327562 17110081 ~ 17129084 (+) False LOC120562784
XM_039806738.1 mRNA downstream 14450 17475568 ~ 17484853 (+) False wdtc1
XM_039806737.1 mRNA downstream 14466 17475584 ~ 17484853 (+) True wdtc1
XM_039806736.1 mRNA downstream 14466 17475584 ~ 17484853 (+) False wdtc1
XM_039806739.1 mRNA downstream 14466 17475584 ~ 17484853 (+) False wdtc1
XM_039805492.1 mRNA downstream 25048 17486166 ~ 17489474 (+) True LOC120562051
TU97574 other upstream 4078 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 87871 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1384445 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1900694 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 2429993 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97725 other downstream 184395 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 289838 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 937938 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 937938 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 953980 18415098 ~ 18420327 (+) False kcnn4

Expression Profile