RNA id: XM_039805029.1


Basic Information

Item Value
RNA id XM_039805029.1
length 5855
RNA type mRNA
GC content 0.42
exon number 16
gene id LOC120561789
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21639092 ~ 21658530 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatctatttatatttatgttgctcctgctgctgctaaaCTCTCAGCACAATTCTATGTTTTCACTTATATATACATTCTAAATTAACCAGGACTGAAATCTTAAGGATTGCCACTTTAACTTTGCAACACATGGTTTTTAATCAGATTTCTAGAGAGCCACTAGATGAAAATGAGCAGTCTTGCCAAACCTTGCATATTTAACAGTTTCATCTGCTAATCAATGGGTGTTACAAAACCCTATAGGTCTGACGATGCGAGACTTCAAAACCCCTGTCAAATGAATTAAGCTAGTTTGGTTCACTGTTTACTGTCATGTCACAACTAACACATAACACAATCCAACATAGGACAACAGCATGCAAAGAATAATATAAAGATGCAAACTATACATAACGTGTTAACATTATGGATGAAACTGAAGCATAACAGGAAATTGGAAATCATAGTGAAGCTCGTTAGGTAAGATTATTAACAAAATAACTAAAACGTATAACAATGTAAATAATGTATTCAAAGCTATAAGGGCGAAAAAAAGATGACCTGTTTTATATTATTCTACACTTTTAAACTTGATGAAAAAAGGGGTGATAATCAGGGTTACAAATTTGCaccatctaccagccaaatgcttgTAAAATCTGCAAGTGGCTGGTatatttgcttcactcaccggccaaaaaaaacaacaacggtaATCCACTGAGTAGTTGctgaaatttgaacattcactaggcATTTGGCTGGTCAACgaaaaagttcattttgaacCCTGGTGATAATGTAttacagtcaaactgaaactgaaactgTTCCACTTCAGTCCACTGGGGGCGctgtggtgctgctgctgcgacACGAGCATCAGAACTCGACTGTCGATGCTGTCTGTGATGAGAACAGTCAAATCGTAATGGCGACTGCTGGAACAGCAGACTCGGGATCAACAGCCCCGACAGgGACCAGTGGCATCCGAAAAATGGCCCCCTCAGAGATGCCTGGCTCTTCAGGCACAACTCAGAGTATGAAGAAGACCATCGGACACCGGGGGGTTGAGACCACCACAGGAGAGACCACCTATAAAAAGACCACATCATCTGCCCTAAAAGGTGCCATCCAGTTGGGCATCACTCACACAGTTGGCAGCTTAAGCCAAAAGGCGGAGAGGGATGTTCTCATGCAGGACTTTGTGGTGGTCGAAAGCATCTTCTTCCCCAGTGAAGGCAGTAACCTGACTCCTGCTCACCACTACAGTGACTTTCGCTTTAAGACCTACGCTCCTATTGCCTTTCGTTACTTCAGAGAACTCTTTGGCATTCGACCAGATGACTACCTGTATTCTCTGTGTAACGAGCCATTGATTGAGCTGTCTAACCCCGGAGCGAGCGGATCCCTCTTCTATGTCTCCAGTGACGACGAGTTCATCATCAAGACTGTTCAACACAAAGAGGCAGAGTTCCTCCAAAAACTTCTGCCTGGATACTTCATGAACATAAACCAAAACAAACGCACCTTGTTACCCAAGTTCTACGGGCTGTATTGCGTGCAGGCAGGTGGCAAGAATATCCGTATTGTAGTGATGAACAATCTTCTGCCTCGGATCATCCCCATGCACCTCAAATACGACCTGAAGGGCTCCACCTATAAGAGACGAGCTTCCCCTAAGGAAAGAGAAAAGGCTGTTCCCATTCACAAAGACCTGGACTTTATCCAGGACTTGCCTGACGGTCTGCTGCTCGAAGCGGACAACTACAATGCCCTGTGCAAGACCATTCAGAGGGACTGCTTGCTCTTGCAGAGTTTCAAGATCATGGATTACAGTCTGTTGATGGGCATCCACAACATGGACCAGGCCAATCGAGAGCGTAGCGGGGTAAACCCGGGTGACAGTGGGGGGTCAGAAGGAGCAGTGACCCCAGATCAGCGCCGGCCACAAGCTCAGAAAAGTCTGTACTGTACAGCCATGGAGTCCATTCAAGGCGAGGCTCGAGGGAAGGGAGTTTTGGATTCAGAAGACCACATGGGCGGTATTCCATCTCGTAATACTAAAGGAGAGAGGTTGCTGATCTACATCGGCATCATTGACATTCTCCAGTCCTACAGGTTTATTAAGAAGTTGGAGCACTCCTGGAAGGCCTTGGTCCATGATGGGGACACAGTTTCAGTTCACAGACCTGGATTCTATGCAGATCGTTTCCAACAATTCATGTGCAACACAGTGTTCAAGAAAATTCCACTAAAACCATCACCATCTAAGAAGAGTCGTGGTGGTGGTCCAGGAGGTCTGAGGAGGGCCCCCACCCTGGGAGGTCCCACCCCGCTCTCCCACGCAGCAGGACAGTCAGCCGTTGACTCCAGACTAGTCTACCACAGCCACTTTAAAAGCACAGATTCAGAGGCAGACGGTGGTGTTCAGTTGGGCAGACCAGATCTTGTTCCGAGGACCCCTCCGCTTGGAGAAAACTCTGCTGACTATGAGGCCAACCTGTCCACCTCGTCACTAGGCAGCACAGGAGTCGCCTCCACCTCGCCTCCCCTACGATCTGTAGGGGTGGAAGTTCACAAATCGGCAAACACAGACCTTGACCATCACAGGTACAGGAGTTTGGGGGAAGAAGGGGCAGTTGATAATTCAGGCAACCTGTCTGGAAACGAAGAAGTCATTTCACTCTCAGACATAATCCCTGAGACCAACATCTGCTTTtaaaaaaaacagacatctgAGGACTAGGCGTTTCTGGATGAGGTGAAGTGGGCGGAAGTAACAATAAAGAGAGTGAAACGCCCATCCACCACGGACCATCCATTGCACCTCTGTTGTTTTCTCACACATAGAGTTTATACAGGGATCGCTGGATCAAGCATCGAGGTGCAGTGGAGGTTGTGACAGTGAAGAAAGCAGTGATGGGAAGATCAAGAAGAAGTCGGTGCGTGGTAGGCTTCAGCGTTCCCAGCCATCGACATCCCAAAGCCCAATTGTCTTTAAtacacacctggaaaaatccttATTACCCTGAATTGGCAGCTCTGTAATAGCTCTGGCAGCATTACATTGATAAAACAAAGACGTTCCCAACATGAAGGATGCTTCGATGACTTAATGAACAATAATTAGTTGTATATTGTGAATGTCCATGCCCCAGTCACCAGTGGATGGTAAAGGCAGTCAAATTATCCGTGAAGTCATCTTGTCCACTTTTCGCAGCATGAAGCAATTGTGAGATGGCACAGACAGCATTTCAGCAGGAACGCACACACTTCACGCACATGAAGGGCATAGCCTGCATTTGTAGGAGTGAATATTTGTCTCTGTGTTCATGCAGAAGTCTAAGTGGTTTCACATTTCCGTGATTCACACTCAAGTGTTGCCGTTTCCCACCCATCCATTTCCCCCTCAGCACTCCTCATGAGCAGGGGCACTCTGAGCTTTCAAAGGTCCTTGTTTGAATCAGCACTTGCTGCTGTTGACTCTGCAATCatgtatgcatttctttttacTGATTGtggatgtacagtatttgtttgACGTCAGATTTTGAAACAGCAGAGAGATGGGTTGAACCAGACTTAACAGCAATTTTGATTTCACGTTTTGTTACCCTGTTGGAAGCCACGGTGGTGCTGCAAAGGTCCAGCTAGATCTTGCCACTGCTGAATGTACTTTACAATGTTTTTCTTATCTAGAACGTGTCTTATTAACATGGCAGACCACATTTGTACAACCCTTACAAACCTCCCACCCTGTTGAAGACCATATGTGCTATAAATGAATACAGAAAGGAAGAGCTGTCGACAGCATTGCTGACCAGTAGATGCTGTTAAATGAAGTCATGGTATTAAGCTAGTAGAATAGTAATAATTTCCAGCTACTGTCATTCATCTGTCATGTCTGTGCCTTTACATGTTTGTCCCCTCCTTAATGTTTGATGTATAACTGACATGTTCTACAGGTTAGTGTTGTCACACAGATAAACCTGCCTTATCACTACAGCTAAAGTCATCAAACTGCCATTTGTATGTTTGGACCAACAATCAGGGCTTAAAAGAATTCCAGATTTTAATGCAAACACTAGTACAGTCCCTTTTGGTTATGTGTACAAATGTCAGCTCAGCTAATACTGTTAACTCTCCCGACATCAGACAATAAGGATGTCTGTCTCTTAATATTCATTTCTGCTGGTTACAGAAATGACCCCTCACCCACATCCACCCTTGACCAATATGCGTATAActaatatttgtttttgttttttctatgTACTGTAGTCTTACTCAGCTTTTACTCTGCTGTTCATAACAATTATgctttgttttcacaaaatgtttttttgtgttgatgttgtttaGGGCACTATACAAGCTGAACAAGCTGCAGAGGCGGCTAGCAGAGAGGtttttacccctgtgagatatTTCTGATACAGAAATTTGAATCACTATTCACTACCAAGTGACTGTAGCAACACTCAAGATCATAGACATCATCTCATTTAAGGAACTACTGTTAGTTTTGTAGGCACATTTGGTCTATGcagcagagagggagaaggggaaACACGGGTTGTGAATGTAGAAGGAACAAAAACTACGTATGTTCATCAATGCACAGTTGAGGATTTAGGACTGAGTCTTTTGTAGTATAAGTCAATCGCTACACCAAAGAAAGGAGTGGGGAGTTCTTGCAAATGTTTAGGATCCAGTACAGGAAAATGAAATCAAGACACTCCTTGATACCTGCATTTACTGATAGGTAGGACATGGTAATAACACTGGGTTGACCTGTGTTTAAGGATCTATTATTAAACtggatgtttgtttgttgtcctAAATAATTTCACGTCTGATAAGCTGTatctgacaatttttttttctttatcaaaGAAACGGTTTACTTTGTGGCCTGAGACATTTAAAGATTTAACTCCACATTCCTGTGATATTCAAGTTAAATTTACTACAGTTGTGGTAGCTCTTAGAACCTGTTATTTACCACCTTTGTGTAGTTGGGGTAATGTACttgaaatgattttttttttctgatatgctgaaatgtaaaatattgattatttCAAACAGATCAGTTTAAAGTTGTATTTAGTTGGTTAAGTCAAACAGCCgccaaagaaaacacaaaaatctTTCTCATAAGAAAAATCCAGTTTATATTTTGTGACAACTGGATTTTGATGTTTTATGTCGTAGAATTATTTTTTGTTGGGTGGTGCTGTGTAATTGCTGGATGTAGACCAGCTCTGTCACAGTTGATGTACTACACCATGGCACAAGAGAAACGTCATCCTACGGTGCTTAAAGGGTGGTGCACTCAGTGTAGACACTACAGtatatttgaagtaatgcaatATGAACCACAATCTGCCACCTTTCAGCTCTAAGaagtatatttattattatgattgATCGCTACAGGCTGAAAAGATGAAAGTTGTATTATGTACCTTTTTAGATGATTGTACGTACACTATATACTGACAAAAGGATGTCTGAAACTTTATAGTGTGTATTGCCTCTGAAGGGGGACAATttcactttttatattttatgtttagaTTGTGATATGATGGACATGTTTGCTCCATGATGATTCTGGGTTGTTAATCTCCCATGATTTTTCAACATGAATGTTTCACACGGCTTACGAGCCAACATTGCTGGTTGTCCTATAATGCTTCAATTACTATATTTTTACTGTGTATAAAATGTGTATATGTACATAGGAGTCACGGAAATGCCTTCTCATGCAATATGTGCTGCCTGTCCCTCCTGCCATGTTTCTGTTTTGTGCTGGTGATGTTTTCATGTCTGATTTTAAAGGATTAAACATATTTTCTAAATCTT

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 303399 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 346712 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 348778 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 349717 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 395525 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 66418 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 377748 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 425152 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 432090 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 457086 22115616 ~ 22116026 (+) True G74729
XM_039805039.1 mRNA upstream 352 21628731 ~ 21638740 (+) False LOC120561791
XM_039805037.1 mRNA upstream 352 21629606 ~ 21638740 (+) True LOC120561791
XM_039805032.1 mRNA upstream 11784 21608459 ~ 21627308 (+) True rorc
XM_039807260.1 mRNA downstream 2672 21661202 ~ 21667831 (+) True LOC120563136
XM_039806135.1 mRNA downstream 9960 21668490 ~ 21678858 (+) True znf687a
XM_039806487.1 mRNA downstream 105945 21764475 ~ 21767853 (+) True c7h1orf43
XM_039806488.1 mRNA downstream 106703 21765233 ~ 21767853 (+) False c7h1orf43
XM_039805303.1 mRNA downstream 146544 21805074 ~ 21818222 (+) True she
TU99582 other upstream 35862 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 234489 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 627721 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1989581 19646975 ~ 19649511 (+) True G73779
TU98343 other upstream 2480097 19148613 ~ 19158995 (+) True G73570
TU99801 other downstream 111018 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 474048 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 479035 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 539264 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 626774 22285304 ~ 22288294 (+) False fam189b

Expression Profile