RNA id: XM_039805032.1


Basic Information

Item Value
RNA id XM_039805032.1
length 2880
RNA type mRNA
GC content 0.47
exon number 13
gene id rorc
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21608459 ~ 21627308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCAGGGCGCATAGAGCCCAGGGAGGGGGGGTGACCGGGGCGCAAGGCTTGTGAACGGCCGGCCGATCCAGCtgcactctctcctctctgctgctgctgcctcggGGGGAATTACATTATTTCAAAACAACCACACAAGAGGAGGTGTACTGCTGAATAAAGGGCTGCTGACAGAGAGGGGTAAGAACATGACGACCGAGTTTTGGGGCCCGCTGTAAGGACAGGAAAGAAGGCGATATGGCAGTGCATGTTTTCAAATGCCTGCGCCGGCCCGGGCGATAGAACAACCAACAGGCGTCTGTggtttctgtgtgtctttgagACTGAGTGTGTAGGGCCACCCAGTGTTTTGACAGAAGAGTTATGGAATATGAGGAGCCCGACGTGCCCCCCGCTGACAACCCCATTAAAAGAGGAGGAGCCGTGTTCAAGAAGACTCATTTGACTCAGATTGAAGTTATCCCGTGTAAGATCTGCGGTGATAAATCCTCTGGAGTGCATTATGGAGTCATCACTTGTGAGGGCTGCAAGGGATTTTTCCGGCGTAGCCAGCTGCCTACTGTATCCTACTCCTGCTCCAGGCAGAACAATTGTCAGATCGACCGGGCCAGCCGCAACCGCTGCCAACACTGCCGCCTGCAGAAGTGCTTAGACCAGGGCATGAGCAGAGATGCGGTTAAGTTCGGACGGATGTCCAAACGTCAGCGGGACTCTCTGATCGCTGAAGTGGAGAGGCaccgacagcagcagcagcagcagcagcagcagcagcagcagcttcaggGAGACGCCCAGTCTCTCTTGTCCTTCCCCACCAAGGCTCGTCAAGACTGCTCCCCACAGCTCCTTCAGCCCATGGCCTCAGCCTACTCCTTCACCGGGGGGGCCGAGCTGCTGTCCTACACCGCTGATGTTCACCCTTACCTGGTGTGCTCCCCGAACGAGACGCAGGTGTCGGGTATGATCTACCGAGGCTCAGGTGTGTCTCCCACATCGAGATCCCAGGGAAGGGGGGACAACAGCGGACACCCCGACATAAGAGAATTTGACTCCAGACAGCCATCTCATGATCTGGTGACGATTCACCCCTACAATCCTCTGGAGGATCCTTACAGCCTCTATCCTCACTCTCTGAGAAACATAGatgAGCTGTGTGCCAGCATTGTGCGTTCCCACAGAGAGACCAGCAAGTACAGAATGGAGGAGCTGCAAGCTCTCAGATGGAAACTGTTTAGCAGAGAGGAGATCCAAGCCTACCAGAGCAAATCAGTGGATGATATGTGGCAGCACTGCGCCATCCGACTGACTGATGCCGTGCAGTATGTTGTGGAGTTCGCAAAACACATCCCAGGCTTCCGTATGCTCAGCCAGAACGACCAGATTGCTCTCCTGAAGACTGGCTCCATGGAGGTGGTTTTGGTCAGGATGAGCCGCTTCTTCAACACAGAGAACAACACAGTCTTCTTCGATGGGAAATTTGCTGGAGCTGAAGTCTTCAAGTCTTTGGCATGTGGTGATTTAATCACAGCGGTGTTTGACTTTGCTCACGGTATGTGTGCTCTAAAGCTCACCGATCAGCAGATCGCTCTCTTCAGTGCTCTGGTGCTGATCAACACAGATCGTCCATGTTTGGAGGATAGAGGAAAAGTTCAGCGAGTGCAAAGAAGCGTGGAGTTTGGACTCACACACATTCTACACCGAGACAACCAAGAAAGTCTATTGCACAAGCTGTACCAGAGGATGGCAGTGTTGCGTTCACTGTGCAGTCTGCACATGGAGAAGCTGCGCTGGTTCAGTCAGCGTTACCCGCTCACTGCTCACTCTCTTTTCCCTCCGCTCTACAAGGAGCTGTTCGCCTCTGAGGCAGAGCTGCTGCCGGGAACCATTCACTGATGATTCACTAGAATATGCaaagacacacattcacacattattTCAAGTCTCATAATTACTTCCTGACAGAATCTATTTTTctaataatgacaataaatgaGAAAAGCACAGTAATCATAGCGTGTTAAGTATTACATGAATTCCAGCAGAGCTTTTTTGGTAGATTGTGTCAacatacatttcaatattttgaTAGCTTAAAACTATTTTGATTATTCCAGGGAAATTGTTGTTCTTTGACAGCACATTGCCAGTGAGGTACGGTATTCATTTTCTCTCAGGATGTGCCCTTGTGAGTCACAGTTACTGTGTGTCACAGTGCGTCAGACATAGAGATTCAAAGAGGCAGGACACAATCGTTGTCAACTGAAACTTAAAAAGGTAGTCCAACCAAAATCTATCTTTAGAgtataaaacaaatatatacagtacaaatagaaaaataaaatagatatagatatattgcATAATACATTCTCCCTTCAAAACAGGAAATATTGGGTGTATGTTATTTACATATTCAGTGTTAAACACACCCAGAAAACAAGAGACAACCTGCTTCTTTGTATCTGTACGTCTGTAGAGAAATGTCTCTCCTCAGGTTGATAAGTCCTACAAAGCAGCAGTACCTCTCAAATGTTATCCTTTGTGTTTAAATAAATCCTCACAGGCTTGTATGTCTTTTGAGCTTGAAAATATGTTGCATTAAATGTAGAAATTGAATTTAAAGTGTGAGAGGTACAGTAGAAGTCTCTTCCTCTGTGTGcaaacttttccttttttttcagattaagttacatattgtatgttttgttttgtttacataTCTTTGACTAAAGCCATAAGTAAAGATATAATGATGAGAGGTTTCAGCATTAAGTACTGTATGTCCGGATGTAGTCCTCTCTGTTCCTGGAACAGCTGAAATTATGATGAAGATAATTCCATGTAAATCTTCTAATAAACGAGGCTGTGAAACCAAGTA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08701 NR1D3; nuclear receptor subfamily 1 group D member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 272766 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 316079 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 318145 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 319084 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 364892 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 97640 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 408970 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 456374 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 463312 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 488308 22115616 ~ 22116026 (+) True G74729
XM_039804688.1 mRNA upstream 5001 21599034 ~ 21603458 (+) False them4
XM_039804689.1 mRNA upstream 5001 21599035 ~ 21603458 (+) False them4
XM_039804690.1 mRNA upstream 5001 21599041 ~ 21603458 (+) False them4
XM_039807044.1 mRNA upstream 11402 21595071 ~ 21597057 (+) True si:dkey-87o1.2
XM_039805792.1 mRNA upstream 38388 21561788 ~ 21570071 (+) False osgin2
XM_039805039.1 mRNA downstream 1423 21628731 ~ 21638740 (+) False LOC120561791
XM_039805037.1 mRNA downstream 2298 21629606 ~ 21638740 (+) True LOC120561791
XM_039805029.1 mRNA downstream 11784 21639092 ~ 21658530 (+) True LOC120561789
XM_039805030.1 mRNA downstream 11790 21639098 ~ 21658530 (+) False LOC120561789
XM_039805031.1 mRNA downstream 14510 21641818 ~ 21658530 (+) False LOC120561789
TU99582 other upstream 5229 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 203856 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 597088 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1958948 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2449464 19148613 ~ 19158995 (+) False G73570
TU99801 other downstream 142240 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 505270 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 510257 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 570486 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 657996 22285304 ~ 22288294 (+) False fam189b

Expression Profile