RNA id: XM_039805039.1


Basic Information

Item Value
RNA id XM_039805039.1
length 1926
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120561791
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21628731 ~ 21638740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATATTGACCGAATTCAAGCACACTGGCCTCTGTTGGACCAATTAACGGACCCGTCTGTGCACTGCCCCGCCGAGCGTGCTTTCTTGGCCTCTGCTCGTGTTTGGACAGTCAGCAGCGGGACAAAAGTTGAATCAGGACAGGCACTACCAAGTGTAGGCTACAATGGGGTCGTCTGGGGCTCTAGTCTGCGCCGCCGCATTTGTCTTGGTTCTACTCAGCTCAGCATCCAATGATGAGCGCAACTTTGAGCAGCGTGAAGTCACCTTTGACATAATCATGCAAGAAATGCAACAACCAGATATCTTGACGGATCTCTTCGATCCCATGGGGGCTTCCAGACCAGGAGTCTTGACACCTAGAGGaaGTCAACCAAGGTTTTGGCCCCGTTCCTTTGGTGGTCCTCCTAGCCTTGAATATCCTGTTCAGTTCCCCCTTGGCCGACCAACCTCCGACAATCTCCAAGCCATCTGTCTCCATGGAGACCATCGCCCCCGCTACCCAAACTCTTACTTTCCTCCCTCTGGTTTTGGCAAGCAGGTACGAAAAGCCAGTGCTGTTAATATGGCGGAGTCCTGGTTTAGCATGTGCTGCAAAGGGAACCAGACTTGGGAAAGGGAACTGACTCTGTGTTGCGCCACACAGGCGTGGGAGCTGTCAGTCCAATCCTTCTGTGAGGAGGACTCGTCCGTAAAGGATCGTCTTTATcactgctgcagacagatggGCAGGGACAGGCTGAACTGCTTCCACAACGACGCTCCGAACCCAAACTATGAGGCAACAGAGGAGCTGCCGGTGCCGCCGCTTTCCTCTACCACCAACTTCAGCTTCGACCCTAACACTTGCCAGAGGACAGTAATAACTCTGTACCGTACCGGAGAGAATGgaagaaaggagaagaaaaTTGACATCCGCTTTCCTCCCGGACGACCCACCGCTGACGTCATTGAATCACTGTGTCGCGACCAGAAGTTACGCCCCCTCTATAAAGCCAATTGCATGCCAGGTGAAGGGTACAAATGGGTGGCTCGTCAGGCAAAAGCCATTAATCGTATAGAGAAGGGATTCAAACAGTGCTGCAAAAAGAAGCAGGATGTGCTCAACTGTGCTGATCTGAAGTGGCGTGATGAACTTAACAAGTATTGCATGGGCGAGAACGGTGACGTTGTGCATTCCCGCTGTTGTTCCGGTGAATTGGCAAATGATCGATACAGCTGTTTCCAAGACATTTCTCCTGACCCATATTATAATAGGACCTCTGTCGCTGAAGAGCTCTCACTTAACAAACTCTGTGACTATCACAAGATCATCAAAAACAAGTTTCCTGTTGGTTTTCCTCTCAAGAGCTTTGTAGGCCAATGCTGCCATCGCCCGCTTGACGTCGACATGACTATTTGTTTTCTGCAGAGTCTTGACCAAATGTCAGAGACCTGTTCATCAAGGAAGGCCTCCCCTCCAGCTGTCCGTCGCTGTTGCCGCATGTCTTCACCTCAACAGTGTATCTCCAAAATTCTCATGGATGCCATCACTAAAGCAACCGTCTTTAGCCAGAAGAAGAATAAGAAAAGGTGCCCTCTCGCCTAAACACTTATGACCTTTTGCTGCTGACCCTTCTGGCACTAGGCCATTCAGGGAACTGGCAGCAGAGGTGAACAGGAAATGTCGACGTCTGTAAGAAAATGTGGGAATTCTATCTTCATCTACTGCCAGtcttatttgcatttttttttttaactgaaatcACATGAGATGCATTTTTCTGTGTCACTGTACCACTATTTGTTATAGGCTGctgtttacatatttgattATGAATGCattatattgatttatttggagCTGCAAGATCAGTTACCTTCTTTTTATATGGTTTTGTGGTTAAGATCATATCTACAACAGTTGTAATAAAAACGTTTTTAGAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 293038 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 336351 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 338417 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 339356 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 385164 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 86208 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 397538 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 444942 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 451880 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 476876 22115616 ~ 22116026 (+) True G74729
XM_039805032.1 mRNA upstream 1423 21608459 ~ 21627308 (+) True rorc
XM_039805033.1 mRNA upstream 1423 21608459 ~ 21627308 (+) False rorc
XM_039805034.1 mRNA upstream 1423 21608459 ~ 21627308 (+) False rorc
XM_039805035.1 mRNA upstream 1423 21616054 ~ 21627308 (+) False rorc
XM_039805036.1 mRNA upstream 1423 21622273 ~ 21627308 (+) False rorc
XM_039805029.1 mRNA downstream 352 21639092 ~ 21658530 (+) True LOC120561789
XM_039805030.1 mRNA downstream 358 21639098 ~ 21658530 (+) False LOC120561789
XM_039805031.1 mRNA downstream 3078 21641818 ~ 21658530 (+) False LOC120561789
XM_039807260.1 mRNA downstream 22462 21661202 ~ 21667831 (+) True LOC120563136
XM_039806135.1 mRNA downstream 29750 21668490 ~ 21678858 (+) True znf687a
TU99582 other upstream 25501 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 224128 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 617360 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1979220 19646975 ~ 19649511 (+) True G73779
TU98343 other upstream 2469736 19148613 ~ 19158995 (+) True G73570
TU99801 other downstream 130808 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 493838 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 498825 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 559054 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 646564 22285304 ~ 22288294 (+) False fam189b

Expression Profile