RNA id: XM_039805087.1


Basic Information

Item Value
RNA id XM_039805087.1
length 3514
RNA type mRNA
GC content 0.51
exon number 20
gene id usp5
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24135689 ~ 24151437 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCTACACATTACGGTAACAAGCCGCAGCCACTCGGCGTGCGAGCAACTGAGTTTGTTCCAGGTTTGTTCGGCCTTCCCTCAACACAAGGCAGCGTCTCATGATTCATTCAGCCATACACAGACAGCACTAGACGGGCTAGACAACGGACACTCTTCCGAGCCAGGGAATCATAGGGCTGGGGGTCCAAAGTAAGAGGAGCAAGTGTCCCACTGAAAGGAGGAACTAGCTAGGTAGTCATGGCGGAGGTTGGTGAGGTTTTGATGTCGGTTTTGTCCACGATTCGGGTTCCGAAGCCCGGGGACCGTGTCCACAAAGACGAATGCGCCTTGTCATTTTCCTCGCCGGAAAGTGAAGGAggtctgtatgtgtgcatgaacAGTTTTCTTGGCTTTGGGAGTCAGTATGTGGACAGGTACCATGCCCGGACTGGACAGAGGGCTTACTTGCACATCACCCGGTCTCGCAAGCCTAAGAAGGAAGATGACAGTAACTCTGGCTCTGGACACCCACCTAAGAAAAAGCCCACCAGATTAGCTATAGGGATTGAAGGAGGGTTTGATGTGGAGCAGGAACAGTATGAGGAGGATGTAAAGGTGGTCATTTTACCTGacagacaggaagtgacatcagaGGACCTTGCTACCATGCCTGACGTTGTAAGAGAGCGGGTGTCCCTGTCGATGACGGGTATCATGGCAGCCGACTCAGTGTCTCATGCTTTACAAGTTCAACAGTGGGATGGAGAGGTGAGACAGGAGTCAAGGCATGCCGCTGACCTTAAACAGCTTGACAATGGAGTCAAAATCCCTCCCAGTGGCTGGCGGTGTGAGGTGTGTGACCTCCAGGAGAATATTTGGATGAACCTGACAGACGGAAAATTGCTGTGTGGTCGCAGATATTTTGATGGCTCCGGGGGCAACAACCATGCCCTACTCCACTTCCAGGAGACGGGATACCCAATTGCTGTCAAACTTGGTACCATTACGCCCGATGGAGCAGATGTGTATTCATATGATGAGGATGACATGGTTCTGGATTCCAAGTTACCAGAGCACCTAGCTCATTTTGGCATTAACATGATGACCATGGAGAAGACCGAGCGGACGATGACAGAGCTGGAGATTGCTGTGAACCAGCGTGTGGGGGAGTGGGAGGTGATCCAGGAGTCTGGGACTACCCTACGGCCCCTGTTTGGCTCCGGTTTGACTGGCATGAAGAATCTGGGCAACAGCTGCTACCTCAACTCTGTCATGCAAGTGCTCttcactgttccagacttccagaACAAGTACGTGTCTAACATCGACAAGATCATTGATGAAGCCCCAAGCGACCCCACCCAGGACTTCAAAACCCAAGTCGCCAAGCTCGGCTACGGTCTGTTGTCAGGAGACTATTCCAAACCAGCACCAGACCATGGAGATGAAAATGCTGCGTCTGAACCCAGGGGAGACCAAATCGGTATAGCACCACGAATGTTTAAAGCACTTGTTGGGCGGGGCCACCCTGAGTTCTCCACCAATCGACAACAGGATGCTCAGGAGTTTTTATTGCACTTCATAAACATGGTGGAGAGAAACTGTCGCTCTGCGTCCAACCCATCTGAAGCCTTTAGGTTCCTGGTGGAGGAGAGGATTGTGTGTCAGCAGTCACAGAAAGCCAAGTACACGCAGCGGGTGGATTACATCGTCCAGCTGCCTGTGCCGATGGACCAGGCTACCAACACAGAAGAGCTTCAGGAGGCAGAACGCCGGCGTGAGGAGGGGGACTCATCAGCCCCTACGGTGCGTGCACAAATCCCCTTCACAGCTTGCATGGCGGCCCTCAGTGAACCAGAGATCCTCGCAGACTTCTGGAGCTCGGCTGTGCAGTCCAAGACTACTGCTACCAAAACGACCCGCTTTGCCTCTTTCCCCGACCACCTGGTCATCCAGATTAAGAAGTTCACCTTTGGCCTTGACTGGGTGCCCAAGAAACTGGATGTGAGCATCGACGTTCCTGATACTCTGGACCTGAGCGCGCTAAGGGCAACCGGCCAGCAGCAAGGGGAAGAGCTTCTACCAGAGGTGGCCCCGCCTCCACTCATGACCCCAGATGTGGAGGTTAAAGGTATCCTGGGTTTCCATGGCAACGAGGAGGACGACTCTCTCTACTCCCCACTACTGTCTCCAGTACTTGATGACTCCACTGTGTCCCAGTTATGTGAAATGGGATTCCCACTGGAGGCCTGCCGGAAAGCGGTGTACTACACTGGAAACACTGGAATCGATGCTGCCATGAATTGGATCATGGGCCATATGGATGACCCAGacTTTGGGTCCCCCCTGGTGTTGCCAGGCTGCAGCTCCGGCCCCGGGACCACACCCACAGAGAGCCTCTCTGAGGAGCACCTGGCAACCATCGTCTCCATGGGCTTCAGCCGAGACCAGGCAACCAAAGCACTTCGAGCCACGAGTAATGTCCTAGACCGGGCAGTGGACTGGATCTTCTCCCACCTGGATGACCTTGAGTCCATGGATGTGTCTGAAGGCGGTCGCTCAGCCGCAGAGAGCGAGGGTGGCAGGGATCCTCCACCTGGACCTCGTGTCAGAGACGGACCAGGCAAGTATGAGCTGTTTGCGTTCATCAGTCACATGGGGACGAGCACAATGTGCGGCCACTACGTCTGTCACATCAAGAAGGATCAGcaGTGGGTCATCTTCAACGACCAGAAGGTGTGCGCTTCAGAGAAACCTCCCAAAGACCTGGGATACCTCTACTTCTACAGGAGAGTGGCTGAATAGACAAGGGAGCGTTACACTCAGGGTGAAGGCAGAGTAATGTGGAcgctaacacaaacacacaggacagCATTCATAGTTGCACCCCACCAAGCTCTTACAAATGCCCTGGCATGCTTCACAGCTGATAAAAGTGTAAATAAATCTGTCAGATTGCATATATACACAGTTGAATAAATTGGTGCAGATGTACAGATAAGGTGTAAGGAGATTTTTCCTTTTGGTCCGTTGATTCCAAACCATGGGCCTGTTCAGAGAATCAGATTCAGTTAGTTACCTGGACAACTATGCTGAGTAAAACCATATGAAATATGTTTAAAACACCTGTTCCATGTTTTACTAATTTTACTAGCAAATGGATCCAGATAATTCAGAAAACCTGCTTCAATGAAACCAGCCCCGAACATTCGAGGGTTCCTATGTCCATTCACTCTTCGTGTAACTATCACCCTCATCCATGTCCTGACTATTGATTTCCACTGCCATCAGTAGTCACTGCCCCTTCCCATCAAAATATGTTGCttccagccccccccccccttcttttaTTGGATGGTTGCAGTTTGTTGTCACCCGTTCAGATGTGCACCAACTCCTCCTCCACCAGTTTCAGtgaggaagtaaaaaaaacaacggaTGAACATCCATGAAGAGCGGAAATGTcattgaaacaaacaaatatataaccGCTCAAATGTGTGTgacaaaaaggaaataaaaaaataaaaagt

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008242 omega peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA upstream 10608 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 13680 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 62045 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 82733 24048925 ~ 24052956 (+) True G75523
TU101012 lncRNA upstream 104350 24027883 ~ 24031339 (+) True G75517
TU101154 lncRNA downstream 64703 24216140 ~ 24216569 (+) True G75611
TU101174 lncRNA downstream 144401 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 317397 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 317398 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 317398 24468835 ~ 24472842 (+) False LOC120562289
XM_039806921.1 mRNA upstream 17624 24115503 ~ 24118065 (+) True cdca3
XM_039806525.1 mRNA upstream 22477 24099844 ~ 24113212 (+) False pex5
XM_039805090.1 mRNA downstream 299 24151736 ~ 24162316 (+) True cd4-2.2
XM_039805100.1 mRNA downstream 11708 24163145 ~ 24180552 (+) True cd4-1
XM_039805099.1 mRNA downstream 11708 24163145 ~ 24180552 (+) False cd4-1
XM_039805098.1 mRNA downstream 11708 24163145 ~ 24180552 (+) False cd4-1
XM_039805097.1 mRNA downstream 24188 24175625 ~ 24180552 (+) False cd4-1
XR_005639925.1 other upstream 81361 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 103244 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 256274 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 367112 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 368222 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 283702 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 283702 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 763817 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1340377 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1351163 25502600 ~ 25504052 (+) True apoc2

Expression Profile