RNA id: XM_039805090.1


Basic Information

Item Value
RNA id XM_039805090.1
length 2841
RNA type mRNA
GC content 0.48
exon number 17
gene id cd4-2.2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24151736 ~ 24162316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTATTCAATATAAGTAATGTCTGTTTTTCACTGCGTACAGAATCCCAGGCCTAGTTTGCGAGAAAGCGCAGGCATGAAGAGCAAACCCACAAACTGCAGGGGTTTGCACCGGCCTACAACTTGGTACACGTTTCTTTTCAGATCTCTTCCGCATTCTACAGGTTTGCATCCTTGTGCTCTTGTTTTCGATGCGGTGAAGCACAAAGAGGATGAGGAAAGATTTTGACTTTCAATAACTTTTTCAAAATTTAAGATCCAACATTCAAAATGAAGACAATCGTGTGGTTTGGTTTTGTGCTGGGTGCACTCTCTGTTGGAGGCGACGTGATCCTCACAAAACCAGGGCAGAGTGCCACCTTCAAGTGTGGGGTCGAGACAAACACTCACAGCCTGGCGTGGAATTATGGAAATGACCTGATTATTAGTTTTGAGGGGAGGGGCTTCCCTCGCAAAGGTGCTAAATTTAGAGACAGGTCGAGGTTAAGGGTTACCAGTCTGGAGATCTCTGGAGTGAGGGAAGACGATGCCGGAGAGTTCATTTGTATGGCAGATGGGAGAAGATATGAACACACACTTCTTGTGGTCTCAGTCTGGGTCAGCCCTTCTAGTGAGCTCCAGCTGGGCAGTGAGGCTACGCTCCAGTGTCGGGTTAAAGGTCTGAACCCCCCGGACTCTCCAGTGAAGTGGAACAGGCCAGATGGAAGTTCACACTCAGAGTCACAGACTGTTCAACTCAAATCTGTAGACCACTCTGATGCAGGGAACTGGAATTGTACGTTCTCCCATGCCGGGAAGAAATACAGTGAGAGCCTAGAAATCAAAGTTCAAGCGCCTGTTCCTGAAACAGCTGCACCATCCCCTTCACCAAGCTCAAAGGACGTCATGCTGGGTGCACTCTCTGTTGGAGGCGACGTGATCCTCACAAAACTAGGGCAGAGTGCCACCTTCAAGTGTGGGGTCGAGACAAACACTCACAGCCTGGCGTGGAATTATGGAAATGACCTGATTATTAGTGTTGATAGGAGTGGCTTCCCTCGCAAAGGTGCTAAATTTAGAGACAGGTCGAGGTTAAGGGTTACCAGTCTGGAGATCTCTGGAGTGAGGGAAGACGATGCCGGAGAGTTCATTTGTACGGCAGATGGGAGAAGATATGAACACACACTTCTTGTGGTCTCAGTCTGGGTCAGCCCTTCTAGTGAGCTCCAGCTGGGCAGTGAGGCTACGCTCCAGTGTCGGGTTAAAGGTCTGAACCCCCCGGACTCTCCAGTGAAGTGGAACAGGCCAGATGGAAGTTCACACTCAGAGTCACAGACTGTTCAACTCAAATCTGTAGCCCGCTCTGATGCAGGGAACTGGAATTGTACGTTCTCCCATGACGGGAAGAAATACAGTGAGAGCCTAGAAATCAAAGTTCAAGCGCCTGTTCCTGAAACAGCTGCACCATCCCCTTCACCAAGCTCAAAGAACGTCATGCTGGGTGCACTCTCTGTTGGAGGCGACGTGATCCTCACAAAACCAGGGCAGAGTGCCACCTTCAAGTGTGGGGTCGAGACAAACACTCACAGCCTGGCGTGGAATTATGGAAATGACCTGATTATTAGTGTTGATGGGAGGGGCTTCCCTCGCAGAGGTGCTAAATTTAGAGACAGGTCGAGGTTAAGGGTTACCAGTCTGGAGATCTCTGGAGTGAGGGAAGACGATGCCGGAGAGTTCATTTGTACGGCAGATGGGAGAAAATATGAACACGCACTTCTTGTGGTCTCAGTCTCAGTCAGCCCTTCTAGTGAGCTCCAGCTGGGCAGTGAGGCTACGCTCCAGTGTCGGGTTAAAGGTCTGAACCCCCCGGACTCTCCAGTGAAGTGGAACAGGCCAGGTGGAAGTTCACACTCAGAGTCACAGACTGTTCAACTCAAATCTGTAGACCACTCTGATGCAGGGAACTGGAATTGTACGTTCTCCCATGACGGGAAGACATACAGTGAGAGCCTAGAAATCAAAGTTCAAGCGCCTGTTCCTGAAACAGCTGCACCATCCCCTTCACCAAGCTCAAAGAACGTCAGCGTTAATCAACATTCAGGCACTGATGCTGTGCTGCTGGGGCTCAGCTGGTGGGTGTGGGTTGCAATTGGAGTAGGCGGCCTGGTCGTGGTTCTCCTGATGGTCTTTGTCATTGTCTTGTGCAAGAAGATCAAAAGAAGGAAGAGAAAATTTCTAAATAAGAAGAATGGCCGACAGCCACTAAAACCCAAGACGTACTGCCAGTGTGACCGcccagcagctgcagcaaaACCGCAGCAAGGACGCAGGAAAGCGAAGCCATCAGCCCTCCCTTTGCAACCCCTGCTAATGGCGTGAGATGAAAGACTGATCCAAGAAAGGAAAaatagacagaaaaaaaagaagagagagagaggaagggaaagaGGAATAGATCAAGATAAAGAGAGCGAGTTAAAGAGAACCCCAGTGTGAATATggaatgaatgtaaatgggCTTTTGAATGCTTGAGATGAAATTTCCACCAAATATAACCAGTGTACTGAATGCAAATAGGCTCCTCCAATGCAAGAGAAAACAGCAACAGTctgtactttttttgacatttatgCAGCATATTAACATGTTAAGAATATCCTTGAATACTGTATTGTCAACCTCTAATGTGCTTTCCATTGTACATTTCATCCAGCTGATtttgatgttttctttcttgtgtttctgtgtatttgACAGATGTCTATGTAGACGTTGTCTTTATTTCTGTAGGCTGTGCATAAAAAGACGATAGTACTGTATTgaagttttgtctttttttccaatAAACTATAAGGATACCCAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA upstream 26655 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 29727 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 78092 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 98780 24048925 ~ 24052956 (+) True G75523
TU101012 lncRNA upstream 120397 24027883 ~ 24031339 (+) True G75517
TU101154 lncRNA downstream 53824 24216140 ~ 24216569 (+) True G75611
TU101174 lncRNA downstream 133522 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 306518 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 306519 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 306519 24468835 ~ 24472842 (+) False LOC120562289
XM_039805087.1 mRNA upstream 299 24135689 ~ 24151437 (+) True usp5
XM_039805088.1 mRNA upstream 984 24135690 ~ 24150752 (+) False usp5
XM_039806921.1 mRNA upstream 33671 24115503 ~ 24118065 (+) True cdca3
XM_039806527.1 mRNA upstream 38524 24099844 ~ 24113212 (+) False pex5
XM_039805100.1 mRNA downstream 829 24163145 ~ 24180552 (+) True cd4-1
XM_039805099.1 mRNA downstream 829 24163145 ~ 24180552 (+) False cd4-1
XM_039805098.1 mRNA downstream 829 24163145 ~ 24180552 (+) False cd4-1
XM_039805097.1 mRNA downstream 13309 24175625 ~ 24180552 (+) False cd4-1
XM_039805103.1 mRNA downstream 23335 24185651 ~ 24194012 (+) False LOC120561822
XR_005639925.1 other upstream 97408 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 119291 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 272321 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 383159 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 384269 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 272823 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 272823 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 752938 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1329498 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1340284 25502600 ~ 25504052 (+) True apoc2

Expression Profile