RNA id: XM_039805095.1


Basic Information

Item Value
RNA id XM_039805095.1
length 2680
RNA type mRNA
GC content 0.46
exon number 11
gene id znf384b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24225153 ~ 24233422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaaaaaaaaaatctaaaaaaaaaaaaagacagagcgAAAAGGCAAAAACTTCACTGGAATTTGGAAACTGTGTCCAAATTGTCCCGAGCTACGGGAGTTCCGGGGAGGGAGACGTAGTCGTCGTTACCGGTAAACGCTACTATTCTCCGTGCAGTCGGTAGTATTTTTTGGAAGATTTTAGCTACACGACTCTGCTGCCGCCTCTCCACCCGTCCACACAGCCGGAAGTCTGATCCTACAAGGCTGGGCCTAAGGCTGAATGACCAACCAGCCAAAGTGAGCAACTGCCCCAAGAGCCCCACACCTGCAGGGGCCCTCAGACCCCCAGCTTCACTGTGTGGCAATTAGTTTGTGAAATGATGGAAGACTCTCATTTTAATTCATCGTATTTCTGGTCTCCCATCCCCACTGTATCAGGACAGATTGAGAATGCGATGTTCCTGAACAAGGTGAAAGAGCAACAGGAAAAGAATGCTTCCTTCTCTTCTTCCCCTGCATCCCACTACCAAACAGCTCTTCTCACCATCCCCACTCCTGGGACAAAGACAGATGGAGGAGGGCAGGCTTGTAGTGTGGCACACCTCCACCCGGCTCACAGCACCCAGAACATGCTGTCTGTCCCCTCCACAGGCATCATGACAGCAGCGGGTCTGGTCATCACAACTCCTCAGGGAACACTAGTCTCTCCCACCTCCTCTCAGTCATTTGTCTCTGGTCATCATCCAGCAACGACCATGATTGTTTCAGCACTCCATTCTGCAGACAAAAAAGAAGGGGACGGGGCGTCCCATGTTGTTGTGATGCCGGCGCCCTCCAAACGAGGCAGAAAGAAGAAGACAACACTGTCTAGGGTCGGTCCTGCAGGAAATGAAACCCTAATACTGGCTCATCTGACAGCTGGTGGCCAGgTGGCATCTTTGCACCATCAGACTGGAGACCCATATGAGCTGTCAGAGGAAGACCATGGCCCAAAAGACAGCACTAAGACATACAGGAACCACACAGAGTCAAAGCCTCATAAGTGTCCCCATTGTACCAAGTCATTTGCCAACTCCAGCTACCTGGCCCAACATGTCCGCATCCACACTGGAGTGAAACCCTACACCTGCTCCTACTGCCAAAAGTGCTTCAGACAGCTCAGTCATCTTCAGCAGCACAACCGgatTCACACTGGAGATCGGCCATACAAGTGTATCCAACCAGGCTGTGAGAAATCCTTCACCCAACTCTCGAATTTACAGTCCCACCGGCGTCAACACAACAAGGACAAGCCCTACAAGTGCACCAACTGCAATAAAGGATACGTAGATGCAGCGAGTCTGGAGGTGCACATGTCTACTCACACAGTCAAGCATGCGAGGATCTACTCGTGTGGTCTCTGCAACCGCACTTATACCTCAGAGACGTATCTGGTGAAACACATGGAGAAACACAACCCAGACCAGCTAACTGCCCCAGCAGCACAGGCGGCACAACAGAACCAAAGCCAGGGTCAGAGCCGGGTAGATAGCGCAGATGGAGGATCAAGCCAACCTGGGGGAGCTGGGAGCGGAGGAGCGGGCGGAGGCCAGCAAGGACCGAGCCAAAGCAACTACCCCCAGACAGAAACCATCTCCTGTCCATTTGACATGCACCAATACAAGACAGTGTCTGCCAGTGACATCCAGTACAAACCTGTCAGCATAGCTGACCTTACTTCCCACAAGAACCTCTGTCTCACTGTGTCAGCATCCACCATTCAAGTGGAACACCTCAACTCTTAGAGGTGATGACAAGGAGGGAGTTTGGGGGGTGGGGAAGTTAAAATTGATTCAAGAAATTGAGGATGGAGAGTCGAGGAATAAAAGCAATACTAAGATGATAGAAGAACTTTGGAACACATGACTGTGCCTGGCTGATGGTTTGAGGCAGACAGGACAAACAATATGGTGACATATACTGAAGACTATgatttgactttatttttttaatttgtcttttttttctgtctgccttgtttgctttgttttccttttgCTTAGCTGTCCTGTCTGAGTAGAACGTGCATGTAAAGGCTGCAATAAAGTGTGTTTCAGTCCATCACAGTGATGGTTTTATGATAGGAAGAGAGTCAAAGTGCTTCTCTTCATTGTTGTTTCATCACCTCATGCTCTTCCCTACAAATACAGCTTTGGCCATAGCAATTTATGGTCTCTCTGTTGAGGGAAATGGTAGTTGACTGTGAAGGTAAATTTTTGTACTTTCTACAGAGACTTTCAGTTATTACCTCTACTATTGTTGTAAAATACATGACTgcaaatatttctttttaacCTTAAAACCAACATAGAGGTAATTTTCCTTTTCAGGAAAGAGAAAATATCAATCAAGTATATATAGATACTACCAGTTTATAAAGTATGATTGTGTGTTTAAAAGATGTGATAATCCATATAACCGATTTACTCATTCGCAGGCTTTCACATGACCTTTTGGTCAGTGATGGTTCACGTTTCATGTAATCCTATTGTACTGCTTTTTGTGTATGTCCTAAAAGTAATGTTATACAAATGTGTTCTTGCTATGATACTTCCATGATAACAATGTTTATAATAGTTCTTTATAGAAATACTGACACAtgaaatttgtctttttttccggCTTATAATACAATAAACCCTCTCATATGTTTCAGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101154 lncRNA upstream 8585 24216140 ~ 24216569 (+) True G75611
TU101108 lncRNA upstream 100073 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 103145 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 151510 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 172198 24048925 ~ 24052956 (+) True G75523
TU101174 lncRNA downstream 62416 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 235412 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 235413 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 235413 24468835 ~ 24472842 (+) False LOC120562289
TU101229 lncRNA downstream 287343 24520765 ~ 24534169 (+) True dedd1
XM_039805101.1 mRNA upstream 19481 24194449 ~ 24205673 (+) True cops7a
XM_039805103.1 mRNA upstream 31142 24185651 ~ 24194012 (+) False LOC120561822
XM_039805102.1 mRNA upstream 31142 24185654 ~ 24194012 (+) True LOC120561822
XM_039805104.1 mRNA upstream 31750 24185652 ~ 24193404 (+) False LOC120561822
XM_039805097.1 mRNA upstream 44602 24175625 ~ 24180552 (+) False cd4-1
XM_039805108.1 mRNA downstream 726 24234148 ~ 24243554 (+) True gnl1
XM_039805676.1 mRNA downstream 19781 24253203 ~ 24292486 (+) True ddr1
XM_039805677.1 mRNA downstream 19781 24253203 ~ 24292486 (+) False ddr1
XM_039805679.1 mRNA downstream 19781 24253203 ~ 24292486 (+) False ddr1
XM_039805678.1 mRNA downstream 19781 24253203 ~ 24292486 (+) False ddr1
XR_005639925.1 other upstream 170826 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 192709 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 345739 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 456577 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 457687 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 201717 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 201717 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 681832 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1258392 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1269178 25502600 ~ 25504052 (+) True apoc2

Expression Profile