RNA id: XM_039805099.1


Basic Information

Item Value
RNA id XM_039805099.1
length 2336
RNA type mRNA
GC content 0.43
exon number 12
gene id cd4-1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24163145 ~ 24180552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaagAGCCAGCTGAAATGCGTACAGTACCAAATGTCAGAGGTGAACGCATCGCTGCACTGAGAACATCACACACCAATCATTGAGGAGGGAGGTGCAACGCCACTTAAGAAGACAGTTTGTTTGATAAATATTCACCATTTCCACCCGACTCCGGATCACTGAACACAGAGGGACACCTAGCACTCAACAACAGATtgccGAGAGATCCGTCTTTCGTGGAAcaggggaggaagagagggggtgTGAGAGGCAGAGGTGGAGGATTGGGATAAGAATCTGCACCTTAACTAAATCAAGGCCCACCACAACCTAGCTGTGACTGAAATGAAGAACTTAATTCAATCCGTCCTTCTCCTCGTTGTGCTAATGTCAACAACAGGGGCACAAGAGTTGATATATTATGCTCAGGTGGGAGAGACGCTTACCCTTAAGCCTCCAGGGTCTTTTTCACAAAACTATGTGTACTGGTACTTTGGTGAAATAGAACTTGCCTGGCGCAATACCATGGGAAGAACATGGACTGCTCAAGAATCACGCTGGAAAGACAGGTTGTCCTTGTACTCTGACGACTCACTTATTATCACAAACCTCCAACAAGAAGACTTCTGGACAAAATTTAAATTTCAAGTATCTAGACTACATGGTGACCGTtctgtatatacatataaactACTCAAACTCACTGTGAGTGTGAACCCACCCTCTCCTCTGCTGCCTGGGGATTCCCTGTCTCTGTCCTGCAATGCAGAAACTCAGGGTCTCAAGCCAGAGATACACTGGCTGAATCCCCAAGGAGTTAAAAGGACACTTAAACAACTCCCTGTGAGAGCCACCAGCCAAGACAATGGCCATTGGACTTGTGTTGTGACAAATGCTAAACAAGAGAAAAGAGCCGATGTTCCCATTACGGTTATGGACCTCTCCCCAGCTCCTTTAAGTCCTCTGTATACGTCTAAATCATCTAAGCCTCTCACCGTCCCCTGTTCCATTCCTCCTCACATCTCCTGGGATCAAATCAAAGCTAAGGACATCCAGGAGGTGCACTGGGAATTCATCCCTGAACCAGACTCGAGTCCAGAGAGGCTGTTCAACCTCTCTCTGGAAGATCCACTGACCTGGCagccaaaacaaaacagaggacTGCGTCCTGTAAAAGACCCTAAAGAAATGGATCTGTCTTTGATTAGAAATCAAGGAAGTGAAGATAAAGGAGATTATGTATGCACCCTGAAATTTAAAAATGGTGTGTCTCTGAACAGGACTGTACACGTGAAGGTGCTGCAATTCACCTCCTCCCCAGGAACAGAGTTAATTTCTGGCCAGCAGCTCAACCTGACTTGCAATCTCAGCCATCCGCTGACTTCTGACCTCCGACTCAAATGGGTCCCACCTGAACAAGCATCCCTCTCGTCTTTGTCTCTGGGATCTGACGGTCACCCAACCCATCTCACCATCCCGGAAGTGGGGACAGGAGATGGTGGAAAGTGGAGGTGTGAGCTGTGGCAGAACGTCACACGGCTGACGTCGGCTGAGATAATTCTGAAGATTGAACCCAAACTGAGTGTGTGGATGCTGGTGGTCATATGCAGTGTCACAGTCATCGtaatcctcctcctcatcctcattTTCATCCTCTACCAACAAAGACAACGGAAGATGAGACACCTCGGGCGCCGACTCTGCCAATGCAAAACCCCCAAGCCCAAAGGATTCTACAGAACATAATATGCACCACAAAGACGTTTTCAAGAGGACATCGCAACCAATTCTATTTCTGTCCAGATAAGATGGATATCATATTCCTATCATATCTGAAACTCAGCTAGATGTGTTAGATGAGGGTCTGAACGTTTTAAACGTTTTTTCAGTCCTGACTGTCTTatcacaaaaatgtgttttatagtTGTACATATCAGCCATTTTGGATTGTTTTGTAACGTAAAATCTTAGGGACTTTTCCATTTCACAGAATTGCTCTATGTTCAATTTAATTATCATTTTAACATTATTGTTTGTGATAATTGCTGTTAATAATTGTTTGTGTTATACCTTTTTTCATCCACATTGTTTCTAGTTTTGTCTTGATATGTAATGTATTTTGTATGATGCTCTAAAATACTGCACTGATAGGCTTGGATACTTGCTTTTATAAATATTtacaaatatattatttttaaaatgagcAGCAAATGTTGATACTAAATACACAAATGAGGACACTTCATTAGTTAAATCAAAACTGGACCTTTTTGtcagatattttttatttttgtagatGAATGTAAAGACATTGGCCACTGAAGTTTACCAATAAAGTATCAATATCTTTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA upstream 38064 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 41136 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 89501 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 110189 24048925 ~ 24052956 (+) True G75523
TU101012 lncRNA upstream 131806 24027883 ~ 24031339 (+) True G75517
TU101154 lncRNA downstream 35588 24216140 ~ 24216569 (+) True G75611
TU101174 lncRNA downstream 115286 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 288282 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 288283 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 288283 24468835 ~ 24472842 (+) False LOC120562289
XM_039805090.1 mRNA upstream 829 24151736 ~ 24162316 (+) True cd4-2.2
XM_039805087.1 mRNA upstream 11708 24135689 ~ 24151437 (+) True usp5
XM_039805088.1 mRNA upstream 12393 24135690 ~ 24150752 (+) False usp5
XM_039806921.1 mRNA upstream 45080 24115503 ~ 24118065 (+) True cdca3
XM_039806528.1 mRNA upstream 49933 24100752 ~ 24113212 (+) True pex5
XM_039805103.1 mRNA downstream 5099 24185651 ~ 24194012 (+) False LOC120561822
XM_039805104.1 mRNA downstream 5100 24185652 ~ 24193404 (+) False LOC120561822
XM_039805102.1 mRNA downstream 5102 24185654 ~ 24194012 (+) True LOC120561822
XM_039805101.1 mRNA downstream 13897 24194449 ~ 24205673 (+) True cops7a
XM_039805092.1 mRNA downstream 44601 24225153 ~ 24233422 (+) True znf384b
XR_005639925.1 other upstream 108817 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 130700 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 283730 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 394568 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 395678 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 254587 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 254587 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 734702 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1311262 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1322048 25502600 ~ 25504052 (+) True apoc2

Expression Profile