RNA id: XM_039805101.1


Basic Information

Item Value
RNA id XM_039805101.1
length 1431
RNA type mRNA
GC content 0.52
exon number 8
gene id cops7a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24194449 ~ 24205673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGATACAGATGCTGATCGACAGCTGCACTTCTCCCGTCCAATCAGCGCTTACGTTGCTTTGTTGTTGTACGTGTGCTGACAGCGGAACTGAACAATCGACAGGCTGTCTGCTAGAAACCAACACAACAAGATGGAGGTGGAGCAGCTCCTGTCTCTGTCAGGCCCAGCACTGGCCCAGGCTGTCAGCTCTCTGCTGGAGACCCCAGGCCTCTACGTCTTCTCTGACATCCTGGAGCTGCCTAATGTCAGAGAGATGGAGAATGGCCCTCATGCACCAATGTACCAGCTCCTCAACCTCTTTGCCTATGGAACCTACTGCGACTACAAAGAGAGAGCAGCCTCTCTTCCAGAGTTGACCCCCGCACAGAGGAACAAACTCCgccatctgtccatcatcagCCTGGCATCCAACCTCAAGTGCCTGCCATACTCGCTGCTCTTGCAGCAGCTGGAGCTGAAGAATGTGCGGGAGCTGGAGGACCTGCTGATCGACGCCGTGTACTGTGACATCATCCAGGGCAAACTGGACCAGAGGAACCAGCAGGTGGAGGTAGACTGCAGCGTGGGTCGTGACCTCGGCCCCAATGAGCTCCCAAACATAGTCAACACACTGCAGGAGTGgTGCACAGGGTGTGAAGCGGTGCTGTGCGGTATTGAGGAGCAGGTCTCGAGGGCAAACCAATACAGAGAGAGCCAGTTAAAGGTCAAAGTCCAAGTGGAAACAGAGGTCTCAAACCTACAGAAAACGTTAAAGGCCAGCGCCGCCTCCCCGTCATCAGGCCCCGCCCCTGCTGGAGCCGCCTCCAACCAGGACGCAGACCAGCCTGCAGAGCCACGAGACCCCGCTTCCTCTCAGGAACCACGACAACCAGGCAAAAAGAGTTCAAAGGTGAAAGGGCTGCGTGGCAGTGGGAAGATCTGGTCCAAGTCCAACTGAAGACAAGAGACTAAGATGTGGAGACGGGGGGACTGATGGACACTCTCACTGATAAACGAACGGACACATGGACATGGTGACGGACAAACGGATGTTCACGGACACACTCGACACAATAAAACCAGGAAGCTTCATGGGAACTTTTCTTGTCACCAAATCTCACCTTGACATATTCAGAAACACACGCCGGTTGATGGAAAACGACAGGTGTGACATCCACTCTTGCAGTTGTTAATAGCCTAACTGGCGGACTGTtagtgtatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacacggaGTGTatttgatgtgtatgtgtgcatctttattggtttaaaaatgttcttttgGTTTAGATGAATGCgcgttgtattttttttttctctgctgaGTTGAGACATGTATAAAATCAGAATATAAATTGTCGGGAAATAAAACGAAGCCCTGTACCCTAA

Function

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12180 COPS7, CSN7; COP9 signalosome complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA upstream 69368 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 72440 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 120805 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 141493 24048925 ~ 24052956 (+) True G75523
TU101012 lncRNA upstream 163110 24027883 ~ 24031339 (+) True G75517
TU101154 lncRNA downstream 10467 24216140 ~ 24216569 (+) True G75611
TU101174 lncRNA downstream 90165 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 263161 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 263162 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 263162 24468835 ~ 24472842 (+) False LOC120562289
XM_039805103.1 mRNA upstream 437 24185651 ~ 24194012 (+) False LOC120561822
XM_039805102.1 mRNA upstream 437 24185654 ~ 24194012 (+) True LOC120561822
XM_039805104.1 mRNA upstream 1045 24185652 ~ 24193404 (+) False LOC120561822
XM_039805100.1 mRNA upstream 13897 24163145 ~ 24180552 (+) True cd4-1
XM_039805099.1 mRNA upstream 13897 24163145 ~ 24180552 (+) False cd4-1
XM_039805092.1 mRNA downstream 19480 24225153 ~ 24233422 (+) True znf384b
XM_039805095.1 mRNA downstream 19481 24225154 ~ 24233422 (+) False znf384b
XM_039805093.1 mRNA downstream 19482 24225155 ~ 24233422 (+) False znf384b
XM_039805094.1 mRNA downstream 19796 24225469 ~ 24233422 (+) False znf384b
XM_039805108.1 mRNA downstream 28475 24234148 ~ 24243554 (+) True gnl1
XR_005639925.1 other upstream 140121 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 162004 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 315034 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 425872 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 426982 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 229466 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 229466 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 709581 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1286141 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1296927 25502600 ~ 25504052 (+) True apoc2

Expression Profile