RNA id: XM_039805112.1


Basic Information

Item Value
RNA id XM_039805112.1
length 4110
RNA type mRNA
GC content 0.40
exon number 11
gene id zgc:110410
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14058640 ~ 14068948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggcTGTCTAAACAGGGAAAACAGTTTCCTTTTGTTTTAGCCTCATGTCATGTAGTTGAGAGAAATGAAGGATTTGATCCAGCAGTTAAAATGAAGAGGCAGCTATTTTAAAGGGAGCTCTCTGGAGGATTTGGTTGCTGCTGGTTGGGGAGGTGGCAGCAATAGAATGGGGAGAGTCACAATCAAATCATTGCAATTAGTAGAAGAAGCACAGGAGACTAGTGCCCCCCAGTGTTTGCTTGATATATGTTTAGTGTTTGTATGCTGCTGTGAAATAATCAGATTCAAAACTAtctgagtagattttttttttttatgatgtgcACTGATCCAGTAAATTTGGAATTTAGTTTTGACCGCATGAAAACCTCAACTTTAACTGCTGATACAATCATTTATAAATCATTTGTATGTGTCCTCTGCAGTTTCAGTCAGAGTTGCTGATAGTTAGAACATGAGGCACGAGGTCTATCGGCCTCTTTGGTTGATCATCCATAACATCAGAAGAGGCTGGAATGCCATCTAGAGGTTAGGTAGCTATAGTGTTATGTactgtggtggaagaagtagtagttttaactttatttacagtataggTACTGTAGTTTAGTCCAGTGTTTTCCAACCTCGGGGTCTGGCCCCTCCAAAGCCTCACAAGATAAATCTAAGGGGGTTGTGAGATGATTAATATGGGAGGAAATAAGTTCTgctacacaaatttgtatttatttgtcgCACTTGTCTCAAAtgttttctaagattttttttaccgTGATATTTTGGACAATTTTACCTCTTTGGACCTCAAACCCTTATTGAATTGAAACTATGTGAGAGGTTTGAGGGGAAATGTCTCTTTAGTGGAACTGCTAATAACCCATAGACATCTgaaacataataaagacactgttTTTTGTAAGAGGTTGTTGAAAGAAGTAAGAGGTTTGTGAATGCGTGgttcatattattttttttatgtgaactCTTAATTTGCAAAGTAACTAACTATAGATGTCAAACTATTGTAGTAGAGTAAAAACTACAGTCTTTCCCTATGAGATGTGAAGTAGAattataaagtagcataaagtAAAGTGAAGTACCTCAAAACTGGAGTAAGTGTagatagttactttccaccactggttatGTATCTGAGGCATAGTCACTTTAAAATATCATATTAATACACTGAATGTTTAGTTCAATCAAATCAGGGCTAAGACTCAACATTGAATCAATGCTAAGAAGTGGAAATTACAATTTTACTGAGCTATGTTTTGTTtcaaagaaaaatgaaatggaTCCATCCTGGACTAGTTTCTCATTCATGGATGAGGTCTTCATTATATGCCTTTCAGTGGCGATTCTCCATGGAGAAGCATTAAGACTGTATTGACCTACATTACTTCACGTATTTTTGGCGTACAGTATGTCTTAAAGCTATTCTTCCTCGCTGTGACTCAATATCCATAATCCCTTTTGCGTCTGTTGGATTGATGGCGTACATCATTTATTTGTCTCTCCGTCACTGAATGGTTTCCATGGGCAGGTTGTTATCAATGTGTAACCAAGGTGAGTCAGGGAGGTTACGTGACTCCCAGGATTCCACAGGCTGCCATTTGCCTTTCTGTACAATACAGGATGAGATGTTACAGGCTTCTCACACACAGCAGGCTAATGATAGATCATTACAGGAAATAGAAATTTGAAACATACCTTTGTTAAAGTGTGTGAAAGCACCAGTATCAACTTGTTCTTAAGGCTCATGTGGATCAATAttgctgaaagaaaaaaaaggtgaagaCACAATTTACTCTGACAAAGTGCCAGCCTGGTTGGTTTAATGACATTTTAAGAACTTCATCTGAATATCCCATTGGACCTAATGAGGGATACATCCTTTTCCCCTGGAGCTTAAGTCCTATCTCTGTGGGAACCGACTGATAGCAGGTAGACTTTGCCCTGAAGGGGAACCAACACTACAGGAAGGGCAAGCAGAGCAGTTTCCTGGCCGTCACAGCAGAGTTGATGAAAAGATCAAACTTTTGGTGGAATGGACAAGACTAATGGCAGCAGCAATGGTGGTTATGAACCTCATCCCCCTCCGTACAATACTCAGGACTACGGACAGAGTTCTTACACAGGGATGAGCTATCAGGTGGGGAAGGGGAACGTTGCAGTGGTCTCCCCTCCTGGCACCTATGATAACATGGTCCATCCTGAGGGCATGGCAGCAGCTGGAGGCGACCATGAGTATGGTCAAGCTCCACCTGACTACTGTCACGGTTTAGAGGACAGCAGCTTCAGCGACGCTGCCATACGAAGAGGCTTCATAAGGAAAGTCTACTTGACTTTGATGATTCAGCTGCTGGTGACGGTCGGGATCATCTGTTCTTTTCTTTACTGGGACACTCTCAGGAAATGGACATGGGCCAACTACTGGTTCTCCTACGCCATGATGGCGGCGGTGATGGTGCTCATCGTGGCCTTGTCCTGCTGTGGCAACCTCCGTCGTCAAGTCCCCCTCAATTTCATCGCCCTGGGCCTGTTTactaTTGCAGAGGGCCTGATGCTTGGATCTGTGGCAGCGTACTTTGATGCAGAAGCAGTTCTGTGGGCTGTGGGAGCAACAGCGCTGGTGTCCTTCGCCTTGACCCTGTTTGCTCTGCAGTCAAAGTGGGACTTCACCAGAGTAAATGGGAGCCTGTGGGTGTTTGCCTGGACCCTCTTTTCATTTGCATTGCTGTGTGCAATCCTCCGATCGCAGTATCTTTACATCTTGTACGCCTGCCTGGGAACCTTGCTGTTTTCTTTATACTTGGTGTTTGATACCCAGCTTATCCTGGGTGGGAAACACAGGAAGTATGAAGTCTCTCCTGAGGAGTATGTGTTTGCTGCTCTCAACCTCTATTTGGACATTGTCACCCtgttcctcctgctgctgcagctcatCGGCCTATGCCGCTAACTCTGAACCTCGCTGACAGGCCTCCCTAAAGAAACACTGAAACGCTCGTCAAGAACATTATGTATTTAGGTTCATATGGGATGAAGATTCACAACCCCCTGTTAGTACTCCAGACATCTGCTGTCATATTTAATTAGGCAGGGATCTGTACAGGTTTGTTTTAAAGTCACGTGTCAGGGTTTATGTTACTGCGATAGGCTGTGTGCTACATTTGGGACTTTTATACTGCACCAGCATGCATTTCTACCTAGAACTTCCAATTTAATGTGCTTAATATTTGTTTCTATGAATATGACAATTTATTATCAGTCTTCTGTAGGAAGAAACTGAAACTTTAAGGCAAATAGAAAGTGCCAAATCAATTCAGGTAGTAACTTATGATATAAGCCAAAGTAGTTCAGCCATCATGTAATCTGTGCCACATTTGCAAAAGTTTAAGCGAAGCTTAAATATGCCTTTGGATATCAAACTAAACTACATTAAAAGGACAGAATATGTCCGTGTTAGCCAAAATCTGATGTTCACTCAGaatgtatatagtatatatctcTATGaccaatttattaaaaaaaaaaacacacaaattaaaACTCAACACGTAGTTTATTGGCATCACACATCAAACATTTTTCATATAAAGAGGGAATGTATCAAGTATAGACTATGAAAGTGCAAATAGCATTTCAAGGATTAGTTGCTTTACAATAGAAAATCTCAGTGAGTTACAAAATGttatatgccattttaaaataaatcacttgATCATTAGAGGTGAAATACAAAGGAAGTACAAATTCCATTTAGACTTGTACCCATTTCATGCACAGCATACTGTCACACAAAAAGGGCGATCTCTTCTGTTAAATCCACTTCCATTAACCAAATCCAACAAAGTTAGCTGCACTAACCATATGGCACTTAGTTTCAGAACTTCAAGACTCTATGTTTAGATTTAATGTGGCTCTATACAGGGGGAAAAATAAAGTAATTTTCTTCAGTCAGACATTAGTCTGTACAAAAACACAATTAAGTCTTAAAGGTAAAACACTGCTGATCAATGTGTCATATTGGTTATTCACAATCCATTTTTGTCAATGAATTCAATTGATTTCAAATAAATACCTACTTTATATTGCAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96714 lncRNA upstream 12591 14041888 ~ 14046049 (+) False LOC120561928
TU96663 lncRNA upstream 370155 13687589 ~ 13688485 (+) False LOC120562711
TU96607 lncRNA upstream 452395 13559760 ~ 13606245 (+) False LOC120562530
TU96612 lncRNA upstream 525638 13532125 ~ 13533002 (+) True G72319
TU96603 lncRNA upstream 575529 13475370 ~ 13483111 (+) True G72314
XR_005639660.1 lncRNA downstream 17655 14086603 ~ 14087796 (+) True LOC120561831
TU96799 lncRNA downstream 94588 14163536 ~ 14163744 (+) True G72466
TU96813 lncRNA downstream 299318 14368266 ~ 14370091 (+) False LOC120562174
TU96863 lncRNA downstream 445719 14514667 ~ 14517897 (+) True G72520
TU96909 lncRNA downstream 535036 14603984 ~ 14604638 (+) True G72551
XM_039805270.1 mRNA upstream 12504 13754053 ~ 14046136 (+) True LOC120561928
XM_039806562.1 mRNA upstream 370126 13624448 ~ 13688514 (+) True LOC120562711
XM_039806811.1 mRNA upstream 437296 13609618 ~ 13621344 (+) True LOC120562882
XM_039806252.1 mRNA upstream 452473 13566151 ~ 13606167 (+) True LOC120562530
XM_039805705.1 mRNA upstream 587124 13468211 ~ 13471516 (+) True prelid3a
XM_039805546.1 mRNA downstream 64636 14133584 ~ 14144295 (+) True cmc1
XM_039805720.1 mRNA downstream 106869 14175817 ~ 14367261 (+) False LOC120562174
XM_039805721.1 mRNA downstream 106869 14175817 ~ 14367261 (+) False LOC120562174
XM_039805722.1 mRNA downstream 106869 14175817 ~ 14367261 (+) False LOC120562174
XM_039805723.1 mRNA downstream 168992 14237940 ~ 14368419 (+) True LOC120562174
TU96598 other upstream 588190 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 932743 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 1285201 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 2349131 11708453 ~ 11709509 (+) False LOC120561922
TU96069 other upstream 2442398 11599037 ~ 11616242 (+) False G71896
TU96779 other downstream 64663 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 106901 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 356846 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 557530 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 957634 15026582 ~ 15026653 (+) True trnae-cuc_16

Expression Profile