RNA id: XM_039805115.1


Basic Information

Item Value
RNA id XM_039805115.1
length 1734
RNA type mRNA
GC content 0.48
exon number 16
gene id hormad1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33032239 ~ 33049137 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCCATGTGCAAGTCAGGACGAAGACATGGGAGTGTTTTCAATGCATGTGTTTTCACCGGTTCAAAGTGTACCGAGTGAACCCATCAATTTACGCCTCTTGTTGGAGACGGTCGGCCCTGCACGGCACGTTTTGAGACCCTCCAGGACAGACCAATGAGGCCCGAGCTGTCGTGGACTCGCCAGCCAATGACACAGGGCAAGGGACAAAACAAACTGACAGACTGGCAATGAGCTCTGTATGCTCTGATTTTGTGTTCTCTCACAACTGCAATGGCCTGTGCACAGCGAGTTAGAACTTCTCAGGATACTCAGCTGTTGCCGAATCAGGTTCTCTCCGAGCAGCAGTCGTTGGTTGTTATAAAGAAGCTTCTGGCCATCGCAGTGTCTGGCATCACATACCTCCGGGGCCTTTTCCCAGAGAAAGCCTACGGCAACAAATATATCGAAGATCAGAAGGTGATGATCCTTAAAGAGGAGCTCAGCTGTCCCGGTTCCAGTCAGATTGTTCAATGGATGCAGGGATGCTTTGAGGCCATCCAGAAGAAGTTTCTGCGGACAGTCATTATGTCTATCTACACTGACCCAGAGAACCCCCAGAAAGTGACTGAGTATTACCAGTTTAAGATCCATTACACAGCAAAAGGAGCACAGATGGACTTTGAAAGcaacaacaacaacaacaacaacgtgtCGTCGATGTCGTGCGGCAACACTAAGAAGGCCAGCATCCTGCTGGTGAGGAAGCTCTACACTCTGATGCAGAACCTCGGCCCTCTGCCAGACAACGTCTGCCTCAACATGAAGCTGGCCTACTATGACAACGTCACTCCTCAGAACTACCAGCCGCCAGGCTTTAGGGAGGCGGACGGCGACACCATGGAGTTTGAGAAGGAGCCGGTCAGACTGACCATGGGCGAGGTGGTCACTCCCTTCCACACTCTGAAGCTGGACATGGCCACCGAGAGACAGAGACTGGAGCAGGTGGAGGAGACTGTTCACGTGACAGAGAAGTGGGTGCtgaacatggaggaggagggcGTCCTGTCGCAGACTCATGTGATTGAAGACGTGGAGAAGCCTGACAACGACAGCACAGACTTGGACAACACTGAGATCCAGATGAGCTGTCTTGAGAAGATGGAGAGCTGTGAGGAAGTCACGGAGATGGACGCTCTGGCGAAGAAGACCTCTGAGATCATGGAGGCGGGCCTGAAGAGGACCAGGAGTGGACGGATCGTCAAGTCTCCTACGGAGACAAACCTGACTGTGAACAGCCAGAAGCCGACAGCTATGAAGGACAAAGCGatttctcAGTTTGACATCCCCAACAGCCAGGAAACGCCATCCTCCCAGCCTAAGAAGAAGCGCAAATTCAGCGAGCCCAAAGAACACTACTGACGTCACCCCCCCCTCTGCTAACACGGCAGCACGGCTGTATTGATTTacattgatgtttttttaaatttaaatttttgcTACATGTTACATAGCTGTTTTTTTGAAAGGGAATTCCACTCCTTATTGCTTTCATTTTGGGGTTGTTTGCTCTACAGTTTATAAAAATCCAACGCAAATCTATGGACATATCACATATTTGATGTTAGAATAGTGGTGAACAATGTATAAATTAACACAGTATTTCAGTAGTTTTTTAATGGCTAtgattgttttattgttatcaCTTTGTTTACAAAGCTGGATTTCATACttgaataaaatacataaaatgca

Function

GO: NA

KEGG:

id description
K12778 HORMAD, HOP1; meiosis-specific protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104142 lncRNA upstream 2448 33022098 ~ 33029791 (+) False G77890
TU104143 lncRNA upstream 3568 33022098 ~ 33028671 (+) True G77890
TU104133 lncRNA upstream 52338 32928334 ~ 32979901 (+) True G77883
XR_005639907.1 lncRNA upstream 79536 32951977 ~ 32952703 (+) True LOC120563080
TU104101 lncRNA upstream 210751 32821243 ~ 32821488 (+) True G77867
TU104154 lncRNA downstream 2343 33051480 ~ 33052859 (+) True G77897
TU104152 lncRNA downstream 48491 33097628 ~ 33099548 (+) True G77895
TU104157 lncRNA downstream 52766 33101903 ~ 33105633 (+) False G77899
TU104158 lncRNA downstream 55306 33104443 ~ 33105633 (+) False G77899
TU104159 lncRNA downstream 55306 33104443 ~ 33105633 (+) True G77899
XM_039806159.1 mRNA upstream 81529 32947311 ~ 32950710 (+) True LOC120562446
XM_039805771.1 mRNA upstream 121047 32905361 ~ 32911192 (+) True scnm1
XM_039805772.1 mRNA upstream 121047 32905395 ~ 32911192 (+) False scnm1
XM_039805770.1 mRNA upstream 121047 32906319 ~ 32911192 (+) False scnm1
XM_039805774.1 mRNA upstream 131910 32892531 ~ 32900329 (+) True tnfaip8l2b
XM_039804862.1 mRNA downstream 38053 33087190 ~ 33096138 (+) True onecutl
XM_039807226.1 mRNA downstream 126772 33175909 ~ 33200642 (+) True lingo4b
XM_039807225.1 mRNA downstream 147078 33196215 ~ 33200642 (+) False lingo4b
XM_039806850.1 mRNA downstream 157570 33206707 ~ 33260917 (+) True si:ch211-113g11.6
XM_039804734.1 mRNA downstream 214593 33263730 ~ 33278517 (+) True tlr18
XR_005639638.1 other upstream 610767 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 610767 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 1052330 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1896093 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2907601 30123702 ~ 30124638 (+) True G77239
TU104140 other downstream 51276 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 576794 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 581902 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 582505 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 789939 33839076 ~ 33861112 (+) False bmper

Expression Profile