RNA id: XM_039805130.1


Basic Information

Item Value
RNA id XM_039805130.1
length 1760
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120561841
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 1977271 ~ 1979210 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTACTCTCGTGGATTGCAATAAAACAGAGCCTCAAGGATATCAGTTATCTGGCTGTGGATGTTTTTGTAACTGGTGAAAGGGATGGCTTCCGAAGAACTCTCACCCTCCTCCTCACCTGTAGCTTCTCCAGCCTCCTGCTCAGCTCCCTGCTCCTCCTCTACCTCATCTTCACCGTGAACTATGAGCTAGCGGTGGCGGGATTGGTCGCCGGCTTCTTTGGGACACTACTGACACTCGCCCTCTTTCTATCAAAGAGAGTAAGGTGCTTTGGGACTCTGTTTGTTATCTCCATTTTCATGAAGAAAAGTCGGAACCTGCTCCTGACCGCTGGGACTAGTTTGGTGGTTCTTAGAAATATCCGCAACACCTTGGAGAACATCACAGGCCTGGTCAGGAGTATGCTCTGCAACCTGAAGGCTAAGAAAGCTGCCATGCTCGCTCCGTTCAGTAACTATGTCAAGATGTTGAAGTGGATAGGAAACATTCTCAAGGGGCTGACAGACTTAGGGGTGGTGAACCTTGACTCCCAACTCAAAGTTACACCCAGACTGGAATCAGACGAACTCAGGGAGAAGCTCAGCGAAGCAGAGCAGAAGCTGAATGTAACAGTGAAGTGCGTGCAGTCCCTGATGAATACAGTCTCCTCTGTGAGCGATAAGGCGTTTCCTGCCATCAGCTTCCTCGTGCTCACGATGTTTATAGCGCTGCACATAAAGAACTACTGCAGCGACATGAAATACGAAAACAGGTTCGTGAGCAGCAGATTTGTTCACTTTGACGAGAAGCAGAAGACGGAAGGGAAGCCCCACGTCCTCCCCCTCACTCCAGAGGAAGAGAAGCTGTACACCACTGTCCCCTCGGCCCGTCCCACCACCAGAGAGGGGAGAGCTATGCTGAAATTTGGTGTTCCAGTCGTCTCCCATTTTATGGCTTGGGTCATATTTATAACCGTGGATGCCTTGTTGTATTGCTTTGTCGATATTGTAACAACAAAGTTATCAGAGCTGGAACCATTCCATGTCCCGTTGTTAATAAGCATCAAAGGGATTGCTACTTTAATAGGTATACCACTCGGTGAGGAAAACCACCAAAAAGATTTTTCCTACTCTGTGAGCCTCTTTGAGAAGAAGTGTCTTCCTAAACCCAAGCTGCTGCTCTATACCTCTGTGGTTCCTTTGGCTGCCATCCTGCTCACCCTGCTCATTATGGCTCTGATGGCTGCCAAAGTGGCCCAGCTCAGGCTCATGGTCTGTGAGCAGTTCTTCTCCACCGCTGCGGAGGAGAGAGTGGAGTACCTGCACGCCAAAATCCTGAGGAAGAgagtaaaaaagaagaagggaaAAAACAACTGCAGCCTCACGTCGCTCTATCTTAAGCCACATTTCTGGTGTCCGCTGCTCTTCAGGCCCAAAGAGAATCCACAACATATCGTGTGAGGATGTTATTTTCTCTGCCCTGCTCCATGGTTTGATTTATTCTATGAATAAGAAGTCATATAAAACATTAGGTCTACTGATGCGGACAACTTTGATCAAAGGATTCTAtgtctaaatttttttttacctctggcTTTTTTACCTCATCCTCCTTGCACAAAGTTGGTGTCTGTCCAAGAATCACGGCCAGCTCTCAAAGTGTCTCTCTGgagaaaaataatgacaaataaTAATGACAATAACTGCTGCAACTGCAACATCATGCGGCACTGTCAGTAGATctatttacttttttaatgTTGATTATAATATTCCGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93670 lncRNA downstream 12964 1956191 ~ 1964307 (-) True G69932
TU93665 lncRNA downstream 30114 1946945 ~ 1947157 (-) True G69927
TU93653 lncRNA downstream 251389 1725184 ~ 1725882 (-) False zfpm2a
TU93620 lncRNA downstream 300920 1676118 ~ 1676351 (-) True G69893
TU93593 lncRNA downstream 622246 1354298 ~ 1355025 (-) True G69866
TU93739 lncRNA upstream 149261 2128471 ~ 2128741 (-) True G69995
TU93857 lncRNA upstream 629032 2608242 ~ 2608898 (-) False G70090
TU93858 lncRNA upstream 629032 2608242 ~ 2608898 (-) True G70090
TU93846 lncRNA upstream 631142 2610352 ~ 2611804 (-) True G70081
TU93861 lncRNA upstream 658852 2638062 ~ 2638288 (-) True G70092
XM_039805936.1 mRNA downstream 116105 1725158 ~ 1861166 (-) True zfpm2a
XM_039805937.1 mRNA downstream 226865 1725158 ~ 1750406 (-) False zfpm2a
XM_039805880.1 mRNA downstream 326632 1376272 ~ 1650639 (-) False oxr1a
XM_039805879.1 mRNA downstream 421665 1376272 ~ 1555606 (-) False oxr1a
XM_039805885.1 mRNA downstream 465859 1376272 ~ 1511412 (-) False oxr1a
XM_039807126.1 mRNA upstream 3194 1982404 ~ 2171236 (-) False rims2a
XM_039807129.1 mRNA upstream 3194 1982404 ~ 2171236 (-) False rims2a
XM_039807131.1 mRNA upstream 3194 1982404 ~ 2171236 (-) False rims2a
XM_039807128.1 mRNA upstream 3194 1982404 ~ 2171236 (-) False rims2a
XM_039807170.1 mRNA upstream 3194 1982404 ~ 2171236 (-) True rims2a
TU93283 other downstream 1244523 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 1948588 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 1948945 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 1949954 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 1950641 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 1649923 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 2000101 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 2093114 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 2093114 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 2093114 4072324 ~ 4077779 (-) True eny2

Expression Profile