RNA id: XM_039805188.1


Basic Information

Item Value
RNA id XM_039805188.1
length 1497
RNA type mRNA
GC content 0.50
exon number 13
gene id dap3
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22332416 ~ 22338933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGTCACTTCCTGTTCAAAGCTACATGATGGCGGTGTCCATGACAGCACTGGCACATTGACTTCGCCTGGAGTTGTGCAGCTCACCCTCTCCATAAACTACTCTGGGGACATTTGTCAGTAGATGACCTTAAGCGAAACCATTGTCACTGAATATTTAATGAACTGAATCGCAGATCATGGCGCTCCACAGACTGTCCTTCAGGCTTCGGCAAACGGTAACGCATGTAAGGCCCCTTCATACCAGTGGATGTgggcaacaacagcagcaacagcagcaggatGCTGTGGCTGTGGAGTCAGAACCTGAGCCCTTCTCAGTTTTCAGAGCACAGGAGAATGATCCGGCATGTCAGTCAGAGAAACATATCGGACAGTATTACACCCTGCCGTCTGCACACCTCCGCACTCTGTTCCCTCACAGCCTCCCTTGGCGCTATCAACAACAGGTGAAGACGTTTAACGAAGCCTGTGTGATGGTGAGGCAGCCAGCTCTAGAGGTCATATCTTACCTGAAGAAAACCGACTACAGCAAGCCTTCTCTGCGATATTTATTCTATGGGTTGAAGGGCAGCGGGAAGACAatgtctctctgtcacacagTCCACTTCTGCTACACACAAGGATGGCTGGTGTTGCATGTTCCTGATGCTCACCTCTGGGTGAAAAACTGTAAAGAGCTGCTGCCCTCATCTTATAACACCTCTCGCTTTGATCAGCCGTTACAAGCCACTGACTGGTTACGCAACTTCAGAATCACCAATGAGCACTTCCTTTCAAAGATAAAGACAAAGCAGCGCTATGTGTGGACAAAGAGAGAGTTCACTGAGCAGGGAAGTCCACTAGGAGAGCTGGTGGATCAGGGTATATCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCGGTGATGAAGGAGCTAAGGCTGCAGAGTGGGCAGCCAGAGTCTGACTTCCGCCTGGCCGTGGCTGTGGATGGTGTCAACGCCCTGTGGGGAAGATCCACCATCAAGAAGGAGGATAAGAGTGCTGTGGATCCGGAGGAGCTCACTTTGGTTTATAACCTGAAGAAGCTGATGACGAACGACTGGACTGGAGGCGCCATCATCACCACTGTGTCTCAGACGGGGTCTCTCTACACTTCAAAATCTGCTTACTTGCCTCAAGAGCTGCTGGGAGAGAGGGGGTTTGACAGCATGGACCCGTTCATCCCGGTGTCGGTGCCCAACTACAGCGAGAAGGAGTTTGAGAGCTGTTACCTCTACTTTATGGACCGCCAGTGGCTGCAGCATCCACAAAGTCGAacagaggaaggaaagaaagaactCATCTTCTTAAGCAACAGAAATCCATCAATGTTGGACAGAATTTGTGCCTTCCTATGAAGCTAGAAGAAGACACaaatctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaa

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99986 lncRNA upstream 19901 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 76938 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 86653 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 89383 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 148379 22183783 ~ 22184037 (+) True G74760
TU100051 lncRNA downstream 284282 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 365939 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 475111 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 579819 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 585659 22924592 ~ 22925155 (+) True G75045
XM_039805334.1 mRNA upstream 19896 22296848 ~ 22312520 (+) True rusc1
XM_039805335.1 mRNA upstream 19896 22296848 ~ 22312520 (+) False rusc1
XM_039805336.1 mRNA upstream 19896 22296848 ~ 22312520 (+) False rusc1
XM_039805337.1 mRNA upstream 19896 22296848 ~ 22312520 (+) False rusc1
XM_039805338.1 mRNA upstream 25324 22296848 ~ 22307092 (+) False rusc1
XM_039805192.1 mRNA downstream 696 22339629 ~ 22345550 (+) True gba
XM_039805190.1 mRNA downstream 18858 22357791 ~ 22366153 (+) True polr3c
XM_039805191.1 mRNA downstream 18858 22357791 ~ 22365770 (+) False polr3c
XM_039805765.1 mRNA downstream 109586 22448519 ~ 22455722 (+) True LOC120562192
XM_039806778.1 mRNA downstream 122198 22461131 ~ 22469782 (+) True prpf3
XR_005639675.1 other upstream 26264 22296848 ~ 22306152 (+) False rusc1
TU100002 other upstream 44122 22285304 ~ 22288294 (+) False fam189b
TU99979 other upstream 132598 22197794 ~ 22199818 (+) False kcnn3
TU99946 other upstream 193193 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 196182 22132578 ~ 22136234 (+) True LOC120561539
XR_005639857.1 other downstream 131045 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other downstream 131045 22469978 ~ 22488718 (+) False rprd2b
XR_005639804.1 other downstream 221012 22559945 ~ 22585572 (+) True celf3b
TU100045 other downstream 278039 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 278039 22616972 ~ 22623084 (+) False arnt

Expression Profile