RNA id: XM_039805194.1


Basic Information

Item Value
RNA id XM_039805194.1
length 1089
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120561876
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5812877 ~ 5814642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATGGCATAATGCTTGGGTGCTGGTAACTGAAGCTGGAGAAGTCAAAACTGCGGGATGTACGTGTGTTGCTGGACCAGGGAGATCTTGTTCCCACTCAGCTGCGATCCTGTGGAAGGTAGAAAATGCTGTGAGACAGGGGAAAACTGGGCGTGCCTGCACAGACGGACAAAACCAGTGGAATGCTGGGTCTAAAAGAAATGCTGGTCAGAGGAAGATGAAGTATGTGCGCTTCAAACGACACAACAGGAAGGATCTCTACCAGCCACCACCAACTTCACCGCCATCCTCTACCACTCCAGAACCGGCACAGGAGGTGACACTCTTTAGGACTCATGAAGAGTGGAGGAAGAACGCACTTGCCTCACCAATGGCAGCACTTTTCAATTGCCCTGGGAATAGCCTCCTGCAGCTCTGCTTTAATGCTAATACCTCCTCCATCACAGAGCCAACACCATGTCCACACCTCCATCTCCTAACCCATGATGAGCACCACACACCACTGGCTTGTGTAAAATGCAGAACCTTCTATGATGAATACATTAACATGTCCACAGCTCAGCTTGAGGAGATTGAGAAGGCTACAGAAGCACAGAGCAAAGAACAGGTCTGGCATGATGCGCGGAGAGTGCGCATCACAGCGAGCACAGCTAGAAAGGTGCCCATTCGCTCAACCACGGCGCCTGACAAGTTTTTGTCAGAACACTTACACCCATCCTTCCGTGGCAATGCCGCAACCCGTCAAGGAGCGAAGGGGGAGGAACTTGCAAGGGACTATTTGGAAACTCTGGGCAACAGCATTGAAACCAAAGGCTTAGTGGTGTGCGAAAAGGAACCATGGCTTGCAGCATCTCCCGATGGAGTGATAAACAACGACATTCTGTTGGAGATCAAATCACCTGTGATGGGAAACAAGTCACTTGCAGAATTTTTGGCAACAAAGAACTGCGAAATCACAACTGTGGCAAACGGAGATAGGGTAGATTACCACATTGCCTGCAATGGTCCAAGCTACTACATGCAGGTACAAATTGGGATGCACTGCACAGGCGCTCTGCACTCTCAAGTTGGTGatctggaacaaaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94812 lncRNA upstream 45782 5766878 ~ 5767095 (+) True G70873
TU94810 lncRNA upstream 54888 5757650 ~ 5757989 (+) True G70871
XR_005639723.1 lncRNA upstream 95181 5717054 ~ 5717696 (+) True LOC120562254
XR_005639721.1 lncRNA upstream 104058 5707970 ~ 5708819 (+) True LOC120562251
TU94802 lncRNA upstream 104184 5708211 ~ 5708693 (+) False LOC120562251
TU94828 lncRNA downstream 94724 5909366 ~ 5909585 (+) True G70887
TU94834 lncRNA downstream 120146 5934788 ~ 5935070 (+) True G70893
TU94842 lncRNA downstream 210888 6025530 ~ 6026116 (+) True G70901
TU94844 lncRNA downstream 211739 6026381 ~ 6026643 (+) True G70903
TU94848 lncRNA downstream 289934 6104576 ~ 6104820 (+) True G70907
XM_039805871.1 mRNA upstream 217977 5591199 ~ 5594900 (+) True si:ch211-198c19.1
XM_039805872.1 mRNA upstream 217977 5593041 ~ 5594900 (+) False si:ch211-198c19.1
XM_039805862.1 mRNA upstream 345787 5336214 ~ 5467090 (+) False LOC120562244
XM_039805863.1 mRNA upstream 345787 5336214 ~ 5467090 (+) False LOC120562244
XM_039805864.1 mRNA upstream 358609 5336214 ~ 5454268 (+) True LOC120562244
XM_039807192.1 mRNA downstream 822210 6636852 ~ 6805600 (+) True tsnare1
XM_039806809.1 mRNA downstream 1189962 7004604 ~ 7029761 (+) True LOC120562880
XM_039805595.1 mRNA downstream 1224521 7039163 ~ 7292435 (+) True cdk14
XM_039805596.1 mRNA downstream 1224521 7039163 ~ 7238814 (+) False cdk14
XM_039805598.1 mRNA downstream 1271071 7085713 ~ 7292435 (+) False cdk14
XR_005639717.1 other upstream 219828 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 394956 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 1146771 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 1699596 4113209 ~ 4113281 (+) True trnar-ucg_13
unassigned_transcript_305 other upstream 1699953 4112851 ~ 4112924 (+) True trnai-aau_22
TU94835 other downstream 145813 5960455 ~ 5960854 (+) True G70894
TU95170 other downstream 1916380 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 2306959 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 2468739 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 2468739 8283381 ~ 8309744 (+) False ano10a

Expression Profile