RNA id: XM_039805208.1


Basic Information

Item Value
RNA id XM_039805208.1
length 1102
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120561883
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37354983 ~ 37359625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acatagaaaaatccatgcagccgccacacagctgacacacaacagaaacaccaCACTCACAGCATGCAGCCAGTATTTAACCGGCCTCACACACACGCTTGTTTACATGCCGGTTTTCTCTGTGACACAGGCGTCGTTTCGGTTTTATTACCTTATTGTATTTAATAGTGACATTGTTGAGCTGAGTCGTTAAGCTAAACGTTttcttgttttctatttttacagATCCTTGTGGTGTGAGGATGCTGTGGAAGTGTGTTCATGGAGTTCAGCAGGATTGTGGGCAAGAACCTCAAGCAGGAATTCTATGAGAGCCTCGATCGGCACAGTCCTCGGCTCCTCGAGTTATTTCGATCCAAGAGAGGGAACGTTGGACAGTTGTTGACACAGATTTCACAACAGACCAATACTACAGAGCCAACTGCGATCCGGACACAGGTGCTCAGAGGGCTTCCTATCATCCTTGGGGACAACCCCACAAACTTCTTCAAAGCAGGCTTTGaatctgatgatgatgatgaggattcTTTTCGTGACCTTGACATTGGGATACTTCATATTGAGCGTGAAGGTGCTGTGCTCACACCTTCCCAGCATCTCAGTCCAGCCTCGTTGAAAATCAGCATTGAGGGAGAAGTCGTGATGGACAACATTCAAGATCTGCCAAAAGCAACGTGCATTCTGTTTGGACTCATGTATGCACTCCATCTTAACAACCCCAAGACTATGGAGCTCACACTTCAGTTCATCCAACAGGAGAACCACTCAGTTCTACGGTCTCTCAGCCTGCCTGCTGACGCCACTCTCCACCTGCCGTCACCAGTCCTGCGTGCTTCGTCTCCCTGCCTGTGTCCACAACCTGTCGCCTGAGAGGATTTTCCCACCAGTCCACCCTGCTACCTTGTCTGATTCATTAATAAACTGTGTAAAACTTCGAACTGTCTATCAGTCTGCTTCTGGGTTCAAGTCACAAATCCTGACAAAGAAGCTGttgactacattttttttttttttttgccacactAGTAAAATACCTTCTTACCTGTGGGGTaaagctttttattttctgtaaaacaagcagatgaaacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105638 lncRNA upstream 150069 37201191 ~ 37206248 (+) True G78947
TU105612 lncRNA upstream 266903 37041691 ~ 37089414 (+) True G78925
TU105563 lncRNA upstream 308284 37004604 ~ 37048033 (+) True G78889
TU105689 lncRNA downstream 73721 37433346 ~ 37467880 (+) True G78990
TU105698 lncRNA downstream 133181 37492806 ~ 37494603 (+) True G78998
TU105699 lncRNA downstream 140265 37499890 ~ 37500110 (+) True G78999
TU105705 lncRNA downstream 166251 37525876 ~ 37530597 (+) True G79004
TU105708 lncRNA downstream 171065 37530690 ~ 37533069 (+) False G79007
XM_039805211.1 mRNA upstream 4746 37336071 ~ 37351571 (+) True LOC120561884
XM_039806544.1 mRNA upstream 29879 37324901 ~ 37326438 (+) True LOC120562694
XM_039806174.1 mRNA upstream 431490 36895389 ~ 36924827 (+) True pik3r4
XM_039805847.1 mRNA upstream 486983 36855419 ~ 36869334 (+) True aldh5a1
XM_039806177.1 mRNA downstream 2599 37362224 ~ 37377784 (+) True LOC120562463
XM_039805207.1 mRNA downstream 27492 37387117 ~ 37391992 (+) True LOC120561882
XM_039805212.1 mRNA downstream 45338 37404963 ~ 37424820 (+) True tmem116
XM_039804868.1 mRNA downstream 206131 37565756 ~ 37568029 (+) True LOC120561682
XM_039806782.1 mRNA downstream 217854 37577479 ~ 37578431 (+) True LOC120562860
TU105558 other upstream 427446 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 652452 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 891087 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 922092 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 1005322 36293987 ~ 36350995 (+) True G78772
TU105685 other downstream 71546 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 171065 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 171065 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 519339 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 696791 38056416 ~ 38077649 (+) False nek11

Expression Profile