RNA id: XM_039805214.1


Basic Information

Item Value
RNA id XM_039805214.1
length 3104
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120561886
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13414324 ~ 13418452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCGTCGTCTTTATCTCAGCTCCTTTTTCGGAGGAAAACAAAGCCAGTTAACATTGGAAGTCGGTAAATTAGCGATACGAATTAGCTAGTGCCGTTACACGAATTGTAACTACACACCAGACCAACGCAGCAACATATAAAGGCAGTGGCAAGCTTGAAGGTCCATCAGCTCTCCTAATGATACATCAGAATTAAGGGTAATTCCATACTTCCTAAGGATGGCTAGTTGTGGGGAGGTAGACCACTCTGTTAGCTCGCTTCCATCCAGTAAGAAAGGCAGCAACAGCGGTGGTGGCAGTGGGAACAGTGCAGAATCCTCATGCTCTGGCTCCAGCAACTCATCCCCGGCCCTGTCTGTACCAGAGTGTGCCAtctgtctgcagagctgcgtccACCCGGTCCAGCTGCCATGCCATCACGTcttctgtttcctgtgtgtgaaGGGAGCATCCTGGCAGAGCAAACGATGTGCTCTCTGCAGACAGGAAGTACCAGATGACTTCCTGGAAAGGCCTACCCTTCTCTCTCCGGAGGAGCTAAAGGCATCGGCGGGAGGTCGGGGTGGGGCTGCAAGTGATCATGCCTGGTATTATGAGGGCCGTAATGGTTGGTGGCAGTATGATGAGCGAACCAGCCGCGAGCTGGAGGACGCTTTCTCCAAGGGCAAGAAAACGGCTGAAATGCTGATAGCTGGGTTTTTGTATGTAGCCGACTTGGAGAACATGGTGCAGTACAGGCGCAACGAGCACGGCCGTAGACGCAAGATGAAGAGGGACGTTTTGGATATCCCCAAGAAGGGAGTGGCGGGACTGCGTTTGGACACTGAGGCTGTTCCTGGGGCCATTGGGGCAGCCGGTCGAGAGAACTCTGCTGATGGGGCTGATACCACAGTAGCAGGTGTACAGCAGCCGGTTACAGGTATCCCCTCTACTGTTACAGCCCCTGCCAGACCTCCCACCTCCCTTGGTGGTCAgcctgacagcagcagcagccccacTCTGGAGGATGCTCTCTCCCAACTGCAGATCAGCCCCAGGCCCACACCTTCTCACGAGCGGTCTGAGGCTggggaaggagaggaagaagacgaggaggaggaggcctcACCCTCCAGGTCCTCTGACCCTCACACCTCCGTGGACGAGTCTGGCTCTGGCGACTGGAGCGacgatgaggaagaggaggaggaggaagaagaagaagggggaGATGGAGAGCGCGTGGAGCCCTGGGAGGGTAGGCCACGGAGGCAAAGACTGAATCCAGAGGACAGAGCCCCTCCTGGCGCAGAGTCAGCCTCTCCCCCTTCTTCATCCAGTAGCAGTGGAAGGTCCAGAATGCCTGATGGCCAGTGTACAGTGACTGAAGTGTGATGTCATCAAAGATACCATCATCACCCAACGGCTATGTTCcatttcattaatttattccTCACTGTATGCTGTCGTTCATTCTGTCACGGATCGGATGTGGGTGGATTGCTTGGTAAAAGAAGTTAAGCATAACATACTCCCATGTTTTTAGGTAAACGACTCGGTTTTAGCTGTCAAATTTGGTGCCTATATTTGGCTCACGATGATCTGGATGTATCTGTATGACTTGTTTGTCAGTCTCATCCAATATATATAGAGTAAGTAGAAGTAATGTTGGATTTTCAGCTCTGGTACTGAGCGTTCTAGTACTGAGACGGGAGGTACAGCTTGGTAATGAGTCAGATGGATACAGCATGTTGTTGTGAGCTGTGGCATTTCCTGATTGCCAATTCAGCAAATCATGTGAGGTAACCGACTTATTATGGCGTTCAGCTGCCATCGGTCTGCTCACTTTTTGCCATTTGGTTGCAGGCAAATCGAGTGTTCTTTTTAAATTCCACAAAAGTGggatttgaaatgtaaaaagaaaaatggcttGGCAACCTGCTTCTGCCTATCCAAGGTAGTCTGGTGTTGAAATCGATTATCCTAATACCCGGAGGGTCTCTGGGAGTCTCAGCCAGATCTGTGACGGTCGAGGGAGAAAGCATGAATGGGGGATGTTACTCCTGGAAATGGAACTGTGTCCGTATCGTTATCATGAACCGCTGCATTGTAATCATCTACACGTTAACTCTCTCCGCTAACATAGCACGCAGAATTGGGCTCATTCGAGCTCAAGCCATCTGACTACTCTTGCAACAAATTTAATCCTTGATAACTTCTTCCCAACATCACCAtacctaaaataaataatttccttACTGAAGATTTAAGTGATTATGAAGCCTTTCCTTAAACATTCTGAAATGTAACTTAACTTTTGAAAGCGTGTCATTTCAGAGCAGATTGTGGATCGACAAAAATCTTCTAGGTTGTTTATCCAGATAAAGAAAGGACACAGAAGTGCTTCGCTATTAAGCAATGTAGGCTATTACGCAACGTAGGTATTTAAATGTGCAACATAAGGAGCCCACAGGAATATCTGTCTGGTGGTTTGTCTTTGATTTCAATTAACCTACAGCTTCTAAAATCTGTGTAGATTACAAATAATGTTTTACATGAATGTGCGTAATAGAAGTACATACATATCAAATTTATTTTAACCTTTCCCAGCTTTAAATAATTGGCATTTTAATGTGAAGTAtcagtgttttcattttaaagctgtTGAGGCCTCTGTAGCCTCGTTAGTATTCTCATTGTCCCGGAATAAAGTATTCTCAATTGGTGTTTCTAAAGTGTTGTGATTTGTGCATGTTTGAAGAGAGAGTTATTTGAACACTACTGGTTGGCAGGATGATGAGAAATATTTTCTTTTGGTTGAGTTTGAGTAAGTCTTTCATTGGTTTGTTTTTCTGCGTTCCTTAAGGTTGTAAATCCTCTTATGTATGATATCTTGAGGCAGTAAGAGAACAAGAACATGCCACTGCTATTGGCCATGCTGCAGAGGTTTCAAgttatgcttttcttttcttattttttataattcttACATGCTTACACCATCAGCTCAGTCTGACTTTCCATTCTGGAGAATAAAGTTTGTGTGTAACAGTTTTTGCTTGGCAACGTTTTGTTACATGGTTTGTAATTTAAGAATAAATTGTCATTTCATCATCCTAAAATGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15700 RNF146; E3 ubiquitin-protein ligase RNF146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96524 lncRNA upstream 164217 13245718 ~ 13250107 (+) False hint3
TU96504 lncRNA upstream 205290 13208828 ~ 13209034 (+) True G72242
TU96453 lncRNA upstream 288785 13124934 ~ 13125539 (+) False G72204
TU96447 lncRNA upstream 289797 13119637 ~ 13124527 (+) True G72199
TU96444 lncRNA upstream 294223 13112215 ~ 13120101 (+) True G72198
XR_005639803.1 lncRNA downstream 27414 13445866 ~ 13448239 (+) True LOC120562636
TU96597 lncRNA downstream 53299 13471751 ~ 13473470 (+) True G72309
TU96603 lncRNA downstream 56918 13475370 ~ 13483111 (+) True G72314
TU96612 lncRNA downstream 113673 13532125 ~ 13533002 (+) True G72319
TU96607 lncRNA downstream 141308 13559760 ~ 13606245 (+) False LOC120562530
XM_039805216.1 mRNA upstream 2403 13395438 ~ 13411921 (+) True rspo3
XM_039805217.1 mRNA upstream 2403 13395438 ~ 13411921 (+) False rspo3
XM_039806592.1 mRNA upstream 150232 13252697 ~ 13264092 (+) False trmt11
XM_039806591.1 mRNA upstream 150232 13252988 ~ 13264092 (+) True trmt11
XM_039806594.1 mRNA upstream 150232 13253192 ~ 13264092 (+) False trmt11
XM_039805705.1 mRNA downstream 49759 13468211 ~ 13471516 (+) True prelid3a
XM_039806252.1 mRNA downstream 147699 13566151 ~ 13606167 (+) True LOC120562530
XM_039806811.1 mRNA downstream 191166 13609618 ~ 13621344 (+) True LOC120562882
XM_039806562.1 mRNA downstream 205996 13624448 ~ 13688514 (+) True LOC120562711
XM_039805270.1 mRNA downstream 335601 13754053 ~ 14046136 (+) True LOC120561928
TU96452 other upstream 288427 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 640885 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1704815 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1798082 11599037 ~ 11616242 (+) True G71896
TU96598 other downstream 49775 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 715159 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 757397 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1007342 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 1208026 14626478 ~ 14630463 (+) False LOC120561718

Expression Profile