RNA id: XM_039805237.1


Basic Information

Item Value
RNA id XM_039805237.1
length 2303
RNA type mRNA
GC content 0.57
exon number 16
gene id ano10a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8283380 ~ 8309744 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTACAGAGGGGCGAGCCGATGCGGAAGTGGCTTTTCTAAACATTGCAGCTCAGCAGTGGTATCTTATAATACTTCCATGTGCTGATATCAGGCAGAAATATCAACTTTACACTCCGTTCACATTTCTTATAATAAGTCTTTACTTCAGAGGTCTGGACCAGGCTCGCTCACCACCGGACACAGCTGCTGATCAGCCCCGAGGCTGGAACACAGCTCCAGAGTTTCCTTCACACATCCGGTGCCCCAGGACGTTTTGTCTGTCTCACTGGGACAGGGGACGATGGTGCAGGGGCCGCCAGCTGACAGCAGTGGCTCCAGGTTCACTCCCCTGGTGGTGCTGGAGCTGGCTTCAGACACCAACCAGGACGCCATCGCATGGCTACTGAGCCGGATCAGAGACCAGCAGCAGCATGGAGGTGCGGAGCTGCTGGTGGAGCAGCTGGGCCCGGGCGTGGACGCtcaggagaaggagaaccccAACATGTTCCTGGTGGGGGCCACGTGGCAGAGGCTGCTCTCCGGGGCTGAGGATGTGGGCCTCTTCAAGGAGTTCAACGATGGATCCATGAGAGCCTTCACCTGCGCCAACAAACACGAATTCAAGGACTATCAAGGGGACGGGGACTCCTTCCTCAGTATGGCTGAGTGTCAGTTCATCATTAAACACCTGCTGGACACATTACGGGCCAAGCAGGAGACTCATGTTCCGGGACACTCTGAGGTCAAGCTCTACCCCGGGAAGTCCATCATCCGCAGACTGCAGTCCAAGGGCATCCTGGTCCAGGTGTTTCCCCTGCACGAAAAGGAGGAACTTAAGCGGCTGTCTTTTTCCTGGTACGGGAAGGTGAAGTTGTCCCTTCAGCCTCTGGACGACATCAGACACTACTATGGGGAGGGCCAGGCCCTGTACTTTGGCTTCCTGGAGTACTTCACCTTTGCCCTGGTGCCCATGGCTCTCATTGGCGTGCCTTACTATCTGTTTGACTGGGAGGACTACGACAAATACGTGGTCTTCGCTGCATTCAACTTGGTGTGGTGCACCGTCATCCTGGAGCTGTGGAAGCGCTGCAGCGCCTCGATGGCCTACCGCTGGGGCACGCTGAGCAGGAAGAAGGCCTTCGAAGAGCCTCGGCCCGGTTTCCACGGCGTCCTGGGGTTCAACCCCGTGACGGGCCGCGAGGAGCCTCTCTACCCCCACGCCAAGAGGCTGCTGCGGATCTACCTGGTGTCGCTGCCCTTCGTCCTGCTCTGCCTCTACATGTCCCTCTACGTCATGATGATCTACTTCCAGATGGAGGGATGGGCGCTGTCCGTCCACGACCAGGAGCCCAGCTTCTGGACAGGAGTCCTGCTCTTCATCCCCTCTATCATCTACGCCGTGGTCATCGAGGCCATGAACCTCATCTACAGATACGCTGCCGAGTTCCTGACAGAGTGGGAAAACCACCGGCTGGAGTCTTCGTATCAGAATCACCTGGTCCTCAAAGTATTAGTAtTCAACTTCTTCAACTGTTTCGCCTCGCTGTTCTACATCGCCTTCGTCATGCAGGACATGGTGCTGCTCCGACAGAGTCTGGCCACGCTGCTGATCACCAGTCAGATCCTGAACCAGTTCATGGAGGCTTTCCTGCCCTACTGGCTGCAGAGGAGACGCAACAAGAAGATGATGCGCAAAGTCCAGAAGAGAAGAACTCTGGAGGACAAAGAGCTCCCGCTGGCCGACCAGGTCCGGCTGGAGGCCGACATGAGCACGTACCTGggtacGTTTGATGACTACCTGGAGCTGTTCCTGCTCTTTGGCTACGTCAGCCTGTTCTCCTGCGTCTACCCTCTGGCTGCCGTGCTGGTGGTGCTGAACAACGTCACCGAGGTTTACTCGGATGCCTTCAAGATGTGCCGGGTGTTCAAGAGACCCTTCTCTGACCCGGCAGCCAACATAGGAGTCTGGCAGCTTGCCTTTGAGGCCATGAGCGTGATTGCTGTTGTGACCAACTGTTCGCTGATAGGCATGTCTCCACAAGTCAAGGCTTACTTCCCCGACTCTGAGTCCCAGCTCATCCTGTGGACAGTGGCTATTGAGCACGCACTGCTGGCCTTTAAGTTCATCCTGAGCTACCTGATCCCAGACGTTCCCAAACCCATCCAGATCAGTCTGGCCCGCCTGGAGTTTGAATCTCTGGAGGCCCTCAAGAAAaAGAGAGCGCTGCGTGGAGGAAAATGCTGGAAGCGTCGGAGCCCAGTGAGCCGGTTcagtgaggaggagaggaggccgTGGAGCAGTCGCCACCTCACACAGCTttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95393 lncRNA upstream 46662 8216677 ~ 8236718 (+) True G71325
TU95391 lncRNA upstream 83472 8198953 ~ 8199908 (+) True G71323
TU95374 lncRNA upstream 130914 8127699 ~ 8152466 (+) True G71306
TU95373 lncRNA upstream 150593 8132249 ~ 8132787 (+) True G71305
TU95269 lncRNA upstream 171955 8103284 ~ 8111425 (+) False G71226
TU95409 lncRNA downstream 2328 8311851 ~ 8314761 (+) True G71334
XR_005639714.1 lncRNA downstream 163747 8473270 ~ 8474591 (+) True LOC120562242
TU95423 lncRNA downstream 197336 8506859 ~ 8514393 (+) True G71348
TU95506 lncRNA downstream 239009 8548532 ~ 8548790 (+) True G71421
TU95509 lncRNA downstream 243006 8552529 ~ 8555278 (+) True G71424
XM_039806766.1 mRNA upstream 84519 8187287 ~ 8198861 (+) True zgc:114181
XM_039805973.1 mRNA upstream 162054 8114521 ~ 8121326 (+) True rwdd1
XM_039804941.1 mRNA upstream 174015 8104864 ~ 8109365 (+) True LOC120561725
XM_039805231.1 mRNA upstream 178531 8104249 ~ 8104849 (+) True LOC120561897
XM_039804940.1 mRNA upstream 178988 8096361 ~ 8104392 (+) True LOC120561724
XM_039806352.1 mRNA downstream 54833 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA downstream 57001 8366524 ~ 8384620 (+) False pomgnt2
XM_039805857.1 mRNA downstream 145241 8454764 ~ 8504452 (+) True LOC120562241
XM_039805233.1 mRNA downstream 450523 8760046 ~ 8774822 (+) False LOC120561899
XM_039806986.1 mRNA downstream 778661 9088184 ~ 9101502 (+) True LOC120562991
TU95377 other upstream 161141 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 482000 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2322526 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2690331 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2865459 5336214 ~ 5417921 (+) False LOC120562244
TU95565 other downstream 439420 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 500828 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 501211 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 501586 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 502725 8812248 ~ 8812336 (+) True trnay-gua_4

Expression Profile