RNA id: XM_039805241.1


Basic Information

Item Value
RNA id XM_039805241.1
length 4670
RNA type mRNA
GC content 0.51
exon number 32
gene id ncapd2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23762873 ~ 23789560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTAACTTTGTGTTGTAGTGTTCACAGTTGTCCAGCAGGTGGCAGTGTTTGTTTAAAACCATGCGCCCAAATCTTTGAGGCGCGTGTATGTGACGTCAGAGTTTCGTTGCTTTGGCGCGATGTCCATACTCATTTGAAAACTTAAACCGCCTTAAGACGGCGGAGAGAGCAGGTTACACTTTTGTCTTCAGAGGTCGTCATTGTGGCTAAAGGAAATTCAGCCGCCACAGGGATGTCGTGGGACTTTTTTGTGCCTGTGTGCGTGGGTGACCTGGTGAAGACTGGGGGGATCAACCAGTACGTGGTTCAGGATGTGGTGCCCCCAAAACAGCTGCCACCATATCTCAGTAAATTTAAAGCGGCATTGAGAAGCCAAGGGCCTTTGTGTATATTGGAACATTTTGACACAGGCTACAGCGTGCTTCAGCACTGCAACTCAGTGGAGCTAGCTGTGAAAGAGGATACTCTGGAGTTACTAGTACAAGTGGTTAGTGGCCTTGCTGCTTCTCTGCCAGCACTTCTCGCCTCCACCTCTGTCTCAGCTGACGAGCGCAAAGAGAAACTTAATGCCGTTAAAATGAGTGTCTACCTGCTCTGCAAACTCACAGAGACCTTTGAGAGTGACTCCTGTAGACAGAGTATCGTCACGGCACCTGGGAAGGGCGGTAAAAAAGGCAAAGGTGGTGGGGAAGGACTGCTGCAGTGGGACTCTGAGAGAGAGAAGGTGCTGCAGGCCCTCGTCCAGCTCCTCCAGCTGGATATCCGTTCACTCTGGAGCCTCTCCCTGGTGGAGGAAGAGTTCATCAGCTGTGTGACCTGCTGCTGCTATAAACTACTTGAGAACCCAACCATCAGCCATGTCAAGAGCAAACCGACCAGAGATGGTATAATCCACTTACTGGGGGTGCTAATCAAAAAGTACAACCATCTCCTAGGTGCAGGTGTAAAGGTCATCCAGTTGTTGCAACACTTCGAGCAGTTGTCATCTGTGTTTGCTCAGGCAGTGTCTGTGTGGAGCACAGAATATGGAGTCAGGGCGATCATAGGAGAAGTAATAAGAGAGATTGGTCAGAGGTCAAGTGAGGAGCTTGCTAGAGAGGCATCGGGGGTCAAAGCTTTTGCTTCCTTCATTGCAGAACTTGGCAGCCTGGTACCTGAATTAGTGATCCCCAACATTAGTGTGCTCATCACACATCTGGAAGGAGAGAGTCACTCAATGCGTGTCGCTGTGTGTGAGGTGCTGGGAGAGATCCTTGTGCGGGTCCTGTGTGGTGACGGGCTGGATGAGTCCGGTAAAGCCGACCGCGACCGATTCTTTGACACACTGCAAGAACATCTGCATGACACCCATTCCCATGTCAGGGCACGTGTGTTGCAGGTCTACACACGCATAGTCAACAGCAAAGCACTGCCTCTGTTTAAGTACAGTGAGGTGATGGAGCTTGCTGTGGGACGACTGATGGACAAATCTATAAATGTGGTGAAGAGTGCCATCCAGCTGTTGGCAGCCTTCATTGCACACAACCCCTATagctgcaaaTTGAGCAGTGCAGATCTGAAGAAACCGCTAGAGAAAGAGACCGCTAAACTCAGAGAGATAAAAGCGCAACTGGAGGGAAAAGCACCAGTGGCAGTGATAAAAGCATCTGAGCTGTGGGCCGCCATGGAGCCTGAGCTACTTGTCACTGTCACGACAGAGCTGGAGCCCACAAGCGAagcgaaggaggaggaggatgacgaCAGGGATGTGGAGGAAAACAAGGAGGCAGAAGATGATAGAGCAACTGCAGTGAAGGTTGCTCAGTACCTCCGTGTCAACAAATACAGGAGTGCTGTGCGTCTTTGTATAAGAGCCCGCAGCTGTTTCCCTAAATCTGAGATGTTTGCGTCTCTGTCCACTCTCACTGCGGAGACTTTAATGGACACACTGGCTCTCATATTCAAAGGCTCTGACGAGGACACCTCTGAGCTCAGCCAGAACTTGCCACCAACCCCgcagaaagaggcagagaagGAGGGGGAGGATGGGGAGCTGAAGAAGCAGGAGATGTTGGTGCAGTACCTGAAAGACACAGAAACCTTCGCCTTACAAGTGGAAAGAGCAATATCTGTCATCAACACCATGCTCTACTTGAAAACCACTTCAGTGGTCCAGGAGGCTGTGCAGTTTTGTGTGACAGTGTGCGAGTTCAGCGTTGCCAACTCCGTCAGTGGGGTGAGGAAGATGTTACCTCTGGTCTGGTCAACTGATTCTGCCATTAAAGATGCTGTCGTTCAGGCCTACAGGCGCCTGTATCTGAACCCTCAGGGAGAGACCATCAGGACAAAAGCCCACACTCTTGTTGACAGTCTCTCTGAGCTGATGGTGGATGCGTCTCTAGGAACAATACAGTGTGTTGAAGAAATAGTGCAGGAGTTCTTTGGCAGTGGCAGCAATCTCCAGTCCACTGTAGTGCAGGTCTTATGGGAGAGGTTTACTGGCAAACGAGAAACTTCTGGCCTACACAGGCGAGCTGCAGTTTTACTGCTGGGCATGGCTGCACGGGCAGAGAGGGAGGTGGTCCTTAGTAATCTGGACACTCTTTGTTCTGTGGCTCTGGGAGAAAAAGTGACTGAAGACTTTCTTCTGGCCAGAGACGCAGTCATCACCATCTGTAGCATCACAGACCATGTCAGGCAATCAAAAGGCGCTCCATTTAGACTACCACAGGATCACCAGCTCTTCACCTGCCTCACACAGGCCATTGCTGACGGTGTGGTAATGGAAGACCCTTACTGGCAGAGCTTCATGGAGCAGGCTGTCCGTCTCCTCTACTTCATGGCTGAATCCCCTGACCAGCTGTGCACTCGGCTGCTCCAGCGCAGCGCTCGCCTCTTACTAGATCAGATTGCAGAAGGTGGCGAACTCAACAAGGACGCTAGCCAAATGCAAGATGTATCTCAAGAGTCCAACGAGCAAGGCGAACAAGTGAACTGTGTATGTCTGGCCCAGCTGTTGgctctgtgtggctgtgtggcttTCTGGCAGGTGTCTCACCTTGAGCGCAGTGTGAGCGCTGAGCTgcggaggaggagaggagagaaagaggagagggaggagaaggaaaaGGGCCCATCCAGCAAAGCTAAGCAAGCGGCCAATGAGAGTGCTATGGAGGAGGAGCTGGGGTTGATTGGTGCCTCTGCTGAAGATACGGAGGCTGAACTCATCAGAAAGATCTGCGAGACTGAATTACTGGCCGAAGAGAACCTGCTGTCTGCATTCCTTCCTCTGTTGGTGAGAGTCTGCAGCTCCCCAGGACGCTATTCCCACCCACAGCTCACCACTTCTGCCTGTCTGGCACTCTCTCAGTACATGATGATAAGCCCATCGACGTGTGAAGAAAACATCCGTCTCATGTTTACAGTGCTGGAGCGCTCCACTCTTCCTGTGGTCAGGGCAAATGCCATAATAGCTCTGGGAGACCTCACTGTCCGTTTTCCTAATATCTTGGAGCCCTGGACACAGAATCTCTATGCCAGGCTCAGTGACGAGGTTCCTTCAGTGAGGCAGACAGCTGTGACAGTTCTTACTCAGTTGGTGCTTAAGGATGTGCTCAAGGTAAAAGGTCAAGTCAGTGAGGTGGCTGTGCTGCTAATTGACCCAGAGCCTCACATTACCAGCCTGGCCCTGAACTTCTTCAACGAGCTGGCCTCCAagGACAATGCAATCTACAACCTGCTCCCAGATATCATCAGTCGCCTGTCTGACCCAGAGAGAGGCATGACCTCCGAGGACTTCAACACCATCATGAAacaGCTGTTCTCCTACATCACCAAGGAAAGGCAGACAGAGTCTCTGGTAGAGAAACTATGTCAGCGCTTTAGGACTGCCAAGACGGAGCGTCAGTGGTGTGACTTGgccatgtctctgtctctgctgtcCATGTGTGAGCGTGGTTTCAAGAGGCTGCAGGAATGCTGGGAGTGTTACAGCGACAAGTTAACCGAGCCTGGCGTCTACCAGCCTCTGCTCTCCATCACTGCCAGGCTCCGTCGTGGGGCCAAAGCCCAGTTCAAGGCCCAGGTAGATGAGTTTGAGAAGCGGCTGACTGCGGTTCATACACGGGGTCTGGAGAATGTGGAAAGTCCTGAGATGGATGAGGAGAACCAAAAAGGAGTAGGATCCTCTGAGAAGACAGTCATGTGTACACCTCCACCCGCCAGAGGCCGTACGAGGTCAAAAAGAGGTCAAGCAAAGCCTTCAGTTTCTGGCCGTGGCGATGACAGTTTTGTGACTCCTCAGAAATCTCGCAAGTCCAAAAAACCTGCGATCACCTTCAGcagtgatgaagaggaggatgaagaggATGCCGTAATGGCGGAGAGTGAGACCCCTAAAGTGACGACACCCATCTCCCGCACATCCCGGCGAGCTCGCCTCAGAAACTGATCTGACTTCTGTTGTATTGTCTTATTTCTGTGTATCTTTCTTTTTAATCCATTATCTGAAATGGTGTATTGcgtttttacatattttttactttttaatcttatttttaaatcttttcttttttatcttttctttttttcaagataTTGGTACTTTTGCACCAAACTGAAGTAGTCTGAGGACTTGTGTAACGACATAGCATCAAATAAACCTGCTTCTTGTTTTGATTACCACTCTA

Function

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K06677 YCS4, CNAP1, CAPD2; condensin complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100761 lncRNA upstream 111380 23648327 ~ 23651493 (+) False casp2
XR_005639669.1 lncRNA upstream 129039 23631416 ~ 23633834 (+) True LOC120561968
TU100720 lncRNA upstream 191630 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA upstream 193017 23568196 ~ 23569856 (+) False trpv6
TU100711 lncRNA upstream 268396 23494213 ~ 23494477 (+) True G75301
TU100883 lncRNA downstream 93617 23883177 ~ 23884631 (+) True G75427
TU100973 lncRNA downstream 153933 23943493 ~ 23948403 (+) True G75483
TU100984 lncRNA downstream 182767 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA downstream 182767 23972327 ~ 23973124 (+) False G75493
TU101012 lncRNA downstream 238323 24027883 ~ 24031339 (+) True G75517
XM_039805254.1 mRNA upstream 55 23757600 ~ 23762818 (+) True ing4
XM_039805255.1 mRNA upstream 55 23757764 ~ 23762818 (+) False ing4
XM_039805242.1 mRNA upstream 5854 23749945 ~ 23757019 (+) True nop2
XM_039805253.1 mRNA upstream 16315 23742367 ~ 23746558 (+) True LOC120561911
XM_039805243.1 mRNA upstream 20615 23736978 ~ 23742258 (+) True kel
XM_039805257.1 mRNA downstream 1440 23791000 ~ 23793093 (+) True wu:fj39g12
XM_039805259.1 mRNA downstream 7518 23797078 ~ 23802187 (+) True gapdh
XM_039806139.1 mRNA downstream 13992 23803552 ~ 23808166 (+) True opn9
XM_039805260.1 mRNA downstream 19020 23808580 ~ 23822343 (+) True iffo1b
XM_039805816.1 mRNA downstream 33764 23823324 ~ 23829685 (+) True si:dkey-260g12.1
TU100710 other upstream 268850 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 860825 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 942820 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 1095329 22660479 ~ 22667544 (+) False LOC120562537
TU100052 other upstream 1139789 22616972 ~ 22623084 (+) False arnt
TU100879 other downstream 84356 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 241830 24031390 ~ 24032445 (+) False atn1
XR_005639925.1 other downstream 264712 24054272 ~ 24054328 (+) True LOC120563208
TU101207 other downstream 645579 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 645579 24435139 ~ 24436819 (+) True G75644

Expression Profile