RNA id: XM_039805242.1


Basic Information

Item Value
RNA id XM_039805242.1
length 2710
RNA type mRNA
GC content 0.46
exon number 16
gene id nop2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23749945 ~ 23757019 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGTCTTGCTTTACTTCACTTGTATGCGCCGGATGCTCTTCCACAACGTGTTGAAGTAATCTCAcgtgtgggttttttttttatctcacacCGTACAATCAGAAGTTGGGTCAAAAAGACACGGATTCATCGAGTCATGGGTCGGAAGTTGGATCCCACTAACAAGGTGAAGCGAGGACCGGGGAGAAAATCCAGGAAGCAGAAAGGAGCAGAGACTGAGTTGGCCAAGTTTATAACTGATGATGATGAAACTGCACCAAAACGCCTCTCGAGTAGAGgcaggaaaagAGCTGCGAAAAGAGTCCAGAACTTGAAAAAGCCTAAAGATGCTGCTGAGGAACAGCCCAAGAAAGGATTCACTGATGAGAACAGTAAATGGTTGAAACCAGCTAAGAAGAAGCGCAAAATTGATGAACCCGAAAGTGAGGATAACAGTGATGAACACTGGGAggaagatgatgatgaggaggaggaggaggagcagcagcagatgaAGAAGGGAGGAAAAGACCAAGGAAAGAAGGGTGCCAAATTAGAAATGAAAGAAgtggaggatgatgatgatgacgatgatgatgatgatgaaatggTTGACGACTACGGTACACTTGATGACGGCAGTGGTGAGGAAGCAGTGGAAGAAGAGAGTGATGGAGAGGAActTCTTCCCATTGAGCGTGCAGCCAAGAAAGCAAAAAAGCTGAAGGAAACCATGCTAGAGAGTGATGACGATGATGAGAAGGAAGATGATGACGAAGAGGAAAAGAAATCAGAGGCTGACATGGATGAGGAAGACACCGTACAGGCCAACATGGATGAAATGGATAAATTTAGGCTACCTGGTGCAGAGGAAAGCGAGAGGGAAGGCATCATGACTCTGGACCTGAAGACAATCCATCAAAGAATAAAGGACAACATTGATGTCCTTTGTAATTTCTCAAcaaagagggaggaggggaaagagagagcagagtaCATCTCTCTTTTGAAGAAGGATCTCTGTACTTATTACAGCTACAACCACTTCCTTATTGAGAAATTAATGGACCTCTTCCCTCTTTCAGAGCTGGTTGATTTCCTCGAGGCCAATGAAATTCAGAGACCTGTCACTATCCGGACCAACACACTGAAAACAAGGAGGAGGGATCTTGCACAGGCCTTGATCAACAGAGGAGTGAACCTTGATCCACTGGGGAAATGGTCTAAAGTGGGTTTGGTCATCTATGACTCCTCAGTACCTGTAGgtgcAACCCCGGAGTATCTGTCTGGTCAGTACATGCTGCAAGGAGCCTCCAGTTTTCTGCCCGTCATGGCGCTCTCTCCACAGGAGGGAGAGCTAGTGTTAGACATGAGCTCAGCCCCAGGAGGCAAGACCACCTATATTGCTCAGCTGATGAGAAACACGGGGACGATTGTGGCCAATGACGCCAACGCTGACAGATTGAAGAGTGTGGTGGGCAACGTCCACCGTCTGGGCGTCACCAACACTGTTATCTGCAACTACGATGGAAGGCAGTTCCCAAAGGTGATGGGTGGGTTTGATAGAGTGCTGCTCGATGCTCCGTGCTCAGGCACGGGAGTCATCGCTAAAGATCCAGCTGTGAAGACCAGTAAGGATGAGGCCGATATCCAGCGCTCTGCTCACTTGCAGAAAGAACTGATTCTATCTGCAATTGACTCTGTCAATGCAGAGTCCCCCACAGGAGGATATCTGATCTACTGCACATGTTCAATAATGGTGGAGGAGAATGAATGGGTTGTGGACTACGCTTTAAAGAAAAGGAACGTCAAATTAGTTCCCACTGGACTTGACTTTGGCAAGGAAGGCTTCACCAGGTTCAAAGAACGTAGATTCCACCCTACTCTGCGACTGTCTCGCAGATTTTACCCTCATTCTCACAATATGGATGGATTTTTTGTGGCCAAGCTGAAGAAATTCTCCAATGTAATTCCAACTGCACCAGCAGCAAAAGAAGAAGAAAGCGCAGATGCTCCTGAGGCGACAGCTGTAACAGACTCACCTGAAGAGAAACCATCCAAAAGTGGCAAGACAAAGAAGATTGTCCCCGGCAAGGCAGGCGGCTTAAAGAGGAAAGCCCAAGCCAACGGAACAAATGCCAAGAAAATGGCAAACGCCAAGCCAAAAGGCAAAAAGGACTTATCTGCTGGaccaaaaaaggcaaaggtCGCCAAGATGGATGGAGAGACTATGAAAGGGACCGAAGCCAAGAAGCCTGCGGTTAAGACAGCTGATGAAACTAAAGTGTCAAAGGCTGACAAAAAGGAAGGAAGCAGATTTGAGAAAAAGCAaggcaaaaagagaaaaacaccaATGAAGGCAAAGgacagaatgggaaagaataAATTCAGAAAGTTGAAGCATCTGTTGGGAAAACAAGGCGGAGAGTGATGGTGTGTACAGCTTGATCAATTGTACTAATTGTGTAAGAGCTTTGTTGAGCTTCATTATGGATCCAGATCCCTTCAGCTAACCAGTGTGTACGCTGTTGTCATTCAGAGCAGCAATTCTGTATGTCAGTCAGATATTATTTGTAATGCCTGTGTACAAATTAATTACACTGGTTAtgttctctctccctttttttatttgttccaGATTACTCATGTTTGTCTGTTGAGCTAATTGCAGGGTGGGACAACTTCCATAAATCTGTGGAATATAATAAATCTTTTAAGATATCTTTCTCA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100761 lncRNA upstream 98452 23648327 ~ 23651493 (+) False casp2
XR_005639669.1 lncRNA upstream 116111 23631416 ~ 23633834 (+) True LOC120561968
TU100720 lncRNA upstream 178702 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA upstream 180089 23568196 ~ 23569856 (+) False trpv6
TU100711 lncRNA upstream 255468 23494213 ~ 23494477 (+) True G75301
TU100857 lncRNA downstream 11221 23768240 ~ 23813408 (+) True LOC120563204
TU100883 lncRNA downstream 126158 23883177 ~ 23884631 (+) True G75427
TU100973 lncRNA downstream 186474 23943493 ~ 23948403 (+) True G75483
TU100984 lncRNA downstream 215308 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA downstream 215308 23972327 ~ 23973124 (+) False G75493
XM_039805253.1 mRNA upstream 3387 23742367 ~ 23746558 (+) True LOC120561911
XM_039805243.1 mRNA upstream 7687 23736978 ~ 23742258 (+) True kel
XM_039805247.1 mRNA upstream 13514 23719861 ~ 23736431 (+) True zyx
XM_039805254.1 mRNA downstream 581 23757600 ~ 23762818 (+) True ing4
XM_039805255.1 mRNA downstream 745 23757764 ~ 23762818 (+) False ing4
XM_039805241.1 mRNA downstream 5854 23762873 ~ 23789560 (+) True ncapd2
XM_039805257.1 mRNA downstream 33981 23791000 ~ 23793093 (+) True wu:fj39g12
XM_039805259.1 mRNA downstream 40059 23797078 ~ 23802187 (+) True gapdh
TU100710 other upstream 255922 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 847897 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 929892 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 1082401 22660479 ~ 22667544 (+) False LOC120562537
TU100052 other upstream 1126861 22616972 ~ 22623084 (+) False arnt
XR_005639923.1 other downstream 7296 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 10166 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 11214 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 116897 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 274371 24031390 ~ 24032445 (+) False atn1

Expression Profile