RNA id: XM_039805247.1


Basic Information

Item Value
RNA id XM_039805247.1
length 4287
RNA type mRNA
GC content 0.46
exon number 10
gene id zyx
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23719861 ~ 23736431 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagatgctgttTACATAGTAATACACAACTCCTGAGCCAAAGTAAAACGAGAGAGAACTTGTTTGGAAGAATGCTGTCATTCCTTTTCCAGACGGAAAAGCACAGGGGGAGGGTCTAATAGCTGAAaaggggaagagagaaagagaagttgCCATTACAGTCAACTCTTACTCAGCCTGGACCAAGAGAAAAAGGAGAACAAAAGGAAGAGGGGGAAGGAAAAAGGAGATACACGTTGCAGCTGCATTAACAGGAAAAGTACACAAAATGGAGGActccagcagcagcaagccGTTCATGATGACATCCTCTTTGAACTTCAAAGTCACCGCCCCGTCCTTCTACAACCAGCCAAAGAAGTTTGCCTCTGTAGCACCACCACGGCCCAAAAGTCTGACGCCTCCCTCGGCTCCATCACCGACACCAATAGGCACAGCTGTGATTGGTCGAGTGGGAGATCTGCCTCCACTGCCCACTTTGCTCTGTGATGACttcccaccccctcctcctcctcctccactggaTGATGATTTGCCAGCCCCTCCCCCTGAATGCCAAACCACACTCAATGCCTCTGAGGCCCCCCCTCCCACCTTCCCCGCTCCACCTCCAGTGGCAGATGACCTGCCCCTCCCAGCTCCCCCTGAGGAGAGGGCCTGTCCGCCCTCCTGCCcgtctccccctcctcccccaccccctccccctctccctgcgTCCGGTACCAGTTTTGCCAGTGCTGCTGGAAACCCACAGAGACTGGTGCAGAAGCAGACTAGCTTCGACAAACAGCTTGATTCCCTAACCGATTTGCTGTCTGAGATGGAGACCAGGGGACCTTTCAACCCTAAGTTACCGAGCCAGTATTCGTCAGCACCAGCACCCAAGCCCTCAGCTCCGCCCCCAACCGCTCCTAAACCagctctctccttcctccccccTCCTGAGATGGGAGATCGCCCACCTCCAGCGCCCTGGGCAGAAGAACTCAAAGCCAGAACGAACCGacaagccaatcacagctcTGCACCAAACTCTGCTGCTCAGCCGTTTGCTAAGGCCCCGGCTGTGGCCCCCAAGTCGGGTTTTGGAGGGAGAACGGCAACATCATCAACCTCTCTGGCACAAAAACTGAACCAGAACCTACACCAGAACACCAACCCTATCGATGTTGCACCCAAACCTTCGCCTCCCTCTGCCACCAGCTCTTTTCCTCCACCTCCCGCAGCTCCCCCTGCACCTCCTACTCCACCAAACAATATGGGGGCTCCCTCACACTCTAATAAGATAAAGAGTTCTCCCTTTGCCAGTCAGGTGAATGCAAACCAAAACCCTCCTGCTGCTGTGCCTCCTCCCCAACCCAAGATGATGACATCTCCCCCCTCTTTTAACCAACCAATGAAAACTCCCGCTGCATCAATGCCCTCTCCACCTGGCCCAGTTCCTATCCCAGGTGGAGGTGTTCCTCTGAATATGAGGGAAGTGGAGGAGCTGGAGAGAATGACCAAGGACTTCATTAAAGacatggacacacacgcacCTGTCATCACCTCCCCTCCTACAGAGGTTTGTGGGAAGTGTGGCGAGGCTCTGTCCCGTACCCAGCCAGCAGTCAGGGCCATGGATAAACTCTTCCACTCCAACTGCTTCTGTTGCATGAGCTGTCATCGCCCCCTGCAGGGCATGCAGTTCTATGACAGGGATGGCGCACCTCAGTGTGAGGACTGCTATATGAGTTCCCTAGCAGTGTGTTCCCGATGCGGGGAGAAGATCACAGACCGCGTGCTGAAGGCAATGGGCCAGTGTTTCCACTCCCACTGTTTCCGCTGCAGCACCTGTTCCTGCTCACTTGAGGGGGCGCCCTTCATCACTGACGACAACAACAACCCCTACTGTGTCCAGGATTACCACAGGCGTTTCTCCcctctgtgtgtgagctgcAATGAACCCATTATTCCAGCCCCGGGCAGCGAGGAGACAGTCAGAGTGGTGGCTCTCGACAAGAACTTCCACCTTAAGTGTTACCGTTGTGAGGATTGTGCTCGTCCTCTCTCCATAGAAGCAGATGAAAATGGCTGCTATCCATTGGATGGTAGGATCTTGTGTATGAAGTGCCACACCCAGCGAGCCAAAAAAGCTGCGCAGTGATTGGCCGAAGCAACGTGACTCAGATTAACTATGAACCAAAATCCAAAAGCACAGGATTCATTCAGCTGCCGGTTTGCCTTTGCAGCAGGGCTTTATTCAGTGTATGTGCGCAGGTGTGAGCGTGAATGTGCTGTGTGAAAAGGTATGTTTGCATGCAGATACAGTGTAGTATTCCCCCATCTTTGTTCACTTAACTTCAGTGCAGAAGTAATGTACTGCATTGAAATAAACTCCCCTCAACTTTTATTCCCAATCTCAAACTCTCCAATCTCTCATCCAGCCCTCTTTGTGTACTAGAACGTATTTTTTGTGCCAATTCTATGTTTACGCTAAAGTTTTCAGCATAACTTGCACAAGAAGAGTTTGGTCAAAAGAGCAGTGTGATGAATATAAAGTTGCCTTTCTTTGTCACTCGCCTCAGTATTGTTAGTAGCAACATCTACTGAGATATTTCCATCGTAAGACTTTCACTGTCTGGTCTCTTTCCTTATGAGCATTGTAACTACATCGTTGTTACTGAGACATATTGTTACCATAGGGTGAGGAGTACCAGAGGCCTCCCATTTGACCACTCTGCAGATTTCACCACTCTGGTTGGCTATTTTGTAGAGCATATCTTTCACACTTTGGCAGTTGTGCCTGCAAGCATGGCTAATTATGCTTTTTCTGACTACGTGAAGTGCTTTTTATTAGCCAATCTAATCCGACAGCATTTTAAAGTTGACTAGGGCTAAACGTTGACTGCAAAAAAAGATAAACGGTGAATGTTGCTcttagtttttttgtgatgtGAATTTATTAATACACAGGCATGCATTGAATTAAGTCTtgttgctctctcttctctgatCATGATCTGATTTGATCATCACAGACTGTATAAGGGCAAGATTAGAACAAACAATCAGCCATTTTCTTCTCAAAAATCATTTAAAGCTGAAACAGTGTATTTTTAGATGCATGCTTTTTGGATGCACAAATTATGAACAAACAGGTGAGCACAGATTCCATTTCAGGGATctcatattttaaaaaacaataaggTTATAAATGTCAGCTGCATGGCTGAAAGCAGGACCTATCATGATCGTTGCACAGTTCCATAGTGAAGTAAAATAGACTTTAAGTGTCACTTTGACTCTAAAGCCCCCGCACATAATCAATTTTGTATTAGTAGACACCATCTAGAAACATAATAGTAGTTTTTGATATGCATTTTCTTGGAATcttactaaaataaaataattttaatttttggactattttcttttattaagtATTAAGGTTGTACCAGTACTCAAATAGCCTGTCCTTACAGATAATAGATCAGTAGAGGCATTAGCTTAGAGTTTTAGTTaacagatgttaaaacatagTGACGAAATATTTCCAAGCTGTTGGCAAGATTAGTAAAACAGTAACCTGAGATTCAATGTTTTGACTTtaatgttttttctctctcactatTTTTGTGTTTGAGCCCAGATTTTTGGTTTTGATCtattttaatgttacagtaCATACCACTATTCTTTCCATTACTCATCTTTTGTACATAAGTCTGTTCATGTCGGTTATATACTATTTTATTCTTATCTTACTGTACTGTGTTTCATTGATAAATGCTTACAATTATTTGGCTTAATTTTGAACCTGGAGATGTGCCTTCTCCACTGTTGTTCCTTTTGAATGGAGCCTGGTTTGCAGCTACAGAAATTCATtccacaataaataaaataaaactgtagtTAATTGTGATTGCATCGAGCTTGGTGCAGTACACCTCCGGAATGACTAACATGCCAATAGTTATTTAGCATTGCATGCTATCTGTGAAGGTGGTGGTGGCATTTCTTCTAGTATTATGTCTTTTGTTTGCACCAACTACTCTACCCTGCCTTTGTCATCACTATGAGTTAGTATATGTATGATGATGCCTTCACAGTTGCATTTATCTGGCGTTTTGTTGTATTATGTCCTATTGTATTACATGTGGAtgcctttttttccatataacttttttataaattcCTGTTTTgatatgtgtgaatgtgtatatgttacattatttagccccacccctcccccctttgGCTGTATCAAAAGATGAACAAATAAAACGCTAAAtaccaaaa

Function

GO: NA

KEGG:

id description
K06273 ZYX; zyxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100761 lncRNA upstream 68368 23648327 ~ 23651493 (+) False casp2
XR_005639669.1 lncRNA upstream 86027 23631416 ~ 23633834 (+) True LOC120561968
TU100720 lncRNA upstream 148618 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA upstream 150005 23568196 ~ 23569856 (+) False trpv6
TU100711 lncRNA upstream 225384 23494213 ~ 23494477 (+) True G75301
TU100857 lncRNA downstream 31809 23768240 ~ 23813408 (+) True LOC120563204
TU100883 lncRNA downstream 146746 23883177 ~ 23884631 (+) True G75427
TU100973 lncRNA downstream 207062 23943493 ~ 23948403 (+) True G75483
TU100984 lncRNA downstream 235896 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA downstream 235896 23972327 ~ 23973124 (+) False G75493
XM_039805312.1 mRNA upstream 34956 23652750 ~ 23684905 (+) True clcn1b
XM_039805311.1 mRNA upstream 34956 23652751 ~ 23684905 (+) False clcn1b
XM_039805310.1 mRNA upstream 35096 23652568 ~ 23684765 (+) False clcn1b
XM_039805315.1 mRNA upstream 68365 23641555 ~ 23651496 (+) True casp2
XM_039805243.1 mRNA downstream 547 23736978 ~ 23742258 (+) True kel
XM_039805253.1 mRNA downstream 5936 23742367 ~ 23746558 (+) True LOC120561911
XM_039805242.1 mRNA downstream 13514 23749945 ~ 23757019 (+) True nop2
XM_039805254.1 mRNA downstream 21169 23757600 ~ 23762818 (+) True ing4
XM_039805255.1 mRNA downstream 21333 23757764 ~ 23762818 (+) False ing4
TU100710 other upstream 225838 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 817813 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 899808 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 1052317 22660479 ~ 22667544 (+) False LOC120562537
TU100052 other upstream 1096777 22616972 ~ 22623084 (+) False arnt
XR_005639923.1 other downstream 27884 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 30754 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 31802 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 137485 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 294959 24031390 ~ 24032445 (+) False atn1

Expression Profile