RNA id: XM_039805263.1


Basic Information

Item Value
RNA id XM_039805263.1
length 1746
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120561921
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11010980 ~ 11016582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtccgaacccagcCCGGATCAtcgggctcggttcgggtatccatgccttactGTGTATATACGGAACACAGGGATTTTCTACCCAGAAGATATTGTAAATAAACATTGTGATTTGGTCTATATTTAGTACATGCGTGATGTGAAACCAAAAGCCGGTTCACTCGTCTCACCCACgctgcagcctgtgtgtttaaAGGAGGGCAGGCTACAAGGTCATATGCTGGTTGGGGGAAGAAAAACGGAAAAAGAGGAGCTATTCTCACTGAGACCTGCCCCTTCACTCTCTTTCCTCCTATCCCTGAGCTCCCAGGCTCACACAGAGCACATGGCTGCATGATTTTGAAACCACCCTCCCATAGAAGGACAATCAAAGTGTCATGGTGGTGCTGGAAGCATGTGCGCCTGTGCAGCCACTCCCATGTCAAGTGCAGCAGAGACACGGAAGCAGATTATTGCATACTTCTACATTTCCTGATTCCTGCCTCCATCATGTCGCTGCTGACTCACGTGCTGGCGTGCCTGTTCGGTATGGGCTCCTGGGTGGCCATCAACGGGATGTGGGTGGAGCTGCCCCTGGTCGTACCGCAGATCCCAGAGCACTGGTATCTGCCATCGTACCTCACAGTCATTATCCAAATGGCCAACATAGGTCCTCTCTTCATCACTTTGATGCACCGCTTCCGCCCAGGGGTGCTAGATGAGCGGCCGGTCATCTACTGCATTGTAGGGTTGGGGATCGTTGCTACAGTCCTGCTGGCTTTCTTCTGGAGGCACACGGTGACAATAGGGGGCTCTTTGCACAGTGTGCCCCTGCTGGTGTTAAGCTTCCTGCTGTCTGTGGTGGACTGCACCTCCTCTGTTACCTTTCTGCCTTTCATGATGCGGATGCGTCCACAGTACCTTACCACGTACTTTGCAGGTGAAGGCCTCAGTGGTCTGGTGCCCGCACTGGTGGCTCTGATTCAAGGTGTTGGTGTAGCCCACTGTCAGAATGACACTATGGCTGATGCAGCCAACACAACAGCTGATAATACCACCATGGTTGGCAGTGGAGAGCTACAAGCCATCTACCAGCCAGCTAAATTCTCTGTCGAGGTATTCTTTATGTTCCTCAGTGCCATGATGGTTGTGTGCCTTGTAGCCTTCATCCTACTCAACCATCACCCAGCTGTGGCTCGAGAGAGAAACAACGACCTGTACTTCAGTGGTGATCTGGCCCCTGGGAAGCGAGAACAAGGTCTGTCCCTGCACACCCAGACACCAGAGCAGAGGCCTATGATCAGCCCTCTGCAAGCCGTCAGGAGGGAAGCAAGGAGCTCTTTTGGTACGGGGACGTATAGCAATCTGGAGGTGGTGTTCATCTTTGTTGTACTGGCTTGGGTCAATGCTCTGACCAATGCAGTGCTGCCCTCAGTCCAGTCCTACTCCTGTCTGCCCTACGGGAACAAGGCCTACCATCTAGCTGCCACCATGGCAGCTGTTGCTAACCCAGTGGCCTGCTTCATCGCCATGTTTGTGCCTATTAGGTCTCTCATCTTCATGGGTTTCTTGGCCATAATTGGGACTGGATTTGGAGCCTACATCATGGCCATGGCTGCTCTTAGTCCATGCCCCCTGCTGGTCCATAGTGCCTCCGGAACTGCAGTCATAGTGCTGACCTGGGTCCTGTTTGTCCTGACTCTGTCCTACGTGAAGGTGATCATTGGGGTGATTCTGAGGGATGAGGGCCACGTTTTAATGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95883 lncRNA upstream 258328 10748123 ~ 10752652 (+) False LOC120562885
XR_005639862.1 lncRNA upstream 258384 10752016 ~ 10752596 (+) True LOC120562885
TU95875 lncRNA upstream 259131 10746008 ~ 10751849 (+) False LOC120561920
TU95992 lncRNA downstream 103337 11119919 ~ 11120208 (+) True G71826
TU96001 lncRNA downstream 146114 11162696 ~ 11163045 (+) True G71835
TU96004 lncRNA downstream 170540 11187122 ~ 11187358 (+) True G71838
XR_005639740.1 lncRNA downstream 219712 11236294 ~ 11309852 (+) True LOC120562313
TU96041 lncRNA downstream 419889 11436471 ~ 11436699 (+) True G71873
XM_039806345.1 mRNA upstream 8510 10961890 ~ 11002470 (+) False macf1b
XM_039806344.1 mRNA upstream 8510 10963257 ~ 11002470 (+) False macf1b
XM_039806340.1 mRNA upstream 8510 10963279 ~ 11002470 (+) False macf1b
XM_039806338.1 mRNA upstream 8510 10973385 ~ 11002470 (+) False macf1b
XM_039806337.1 mRNA upstream 8510 10973385 ~ 11002470 (+) False macf1b
XM_039804687.1 mRNA downstream 450763 11467345 ~ 11482423 (+) True depdc1b
XM_039805415.1 mRNA downstream 521078 11537660 ~ 11599226 (+) False mbpb
XM_039805417.1 mRNA downstream 582532 11599114 ~ 11616059 (+) True LOC120562012
XM_039805416.1 mRNA downstream 582634 11599216 ~ 11615900 (+) False LOC120562012
XM_039805420.1 mRNA downstream 582634 11599216 ~ 11615900 (+) False LOC120562012
TU95885 other upstream 143148 10785654 ~ 10867832 (+) False LOC120562569
TU95894 other upstream 189480 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 189563 10820295 ~ 10821417 (+) True G71743
TU95730 other upstream 802783 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 2161260 8849632 ~ 8849720 (+) True trnay-gua_42
TU96068 other downstream 582455 11599037 ~ 11616242 (+) True G71896
TU96069 other downstream 582455 11599037 ~ 11616242 (+) False G71896
TU96107 other downstream 691871 11708453 ~ 11709509 (+) False LOC120561922
TU96328 other downstream 1744235 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 2108352 13124934 ~ 13125897 (+) True G72204

Expression Profile