RNA id: XM_039805267.1


Basic Information

Item Value
RNA id XM_039805267.1
length 1320
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120561926
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12780215 ~ 12782230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGAAACAAGAGAAGCTCTGAGCTCATGCTCTTCCGCCTGTTTTTTGCTGCTCTTTGCCTCGAGGCATTTACCATAGGGATAACAATTTACTGTCCATCTCAGAAGTTGAACTGGACAGCAGCGAGACTGTACTGCCAGAGGAACCACATTGACTTTGTAACTTGGAAGGTAGTGCACACATCCCAGCTGGCTAAGTTTTTGGTGGGCATTAAGGTCAAACAAACCTGGATCGGTCTACTCAGAGACCCTGAAAATGCCACAGTCTGGAAGTGGATAAATGTAAAAAGTGGAACGGGGATTTCAGGAGACGACCTCTCACAGAGCAGCTACTGGGCCCATGGAGAGCCCAGCAGTAACTGTGCAGTTGTGAAAGAGGATTTAAAGTGGCACAGTGTGACGTGTTCAGATGCACATGATTTCTACTGCTCGGAAAAGGAAAACACTTACCATCACAACAATAGCCTTAACTGGCACAACGCTTCTCAGTACTGTAAGAATGAAAGTGATGGTGACCTAGCCACCATCACCATAACAAACGCTGATGAATTAACAAAACCTGGCTGGATTGGACTGTACCGAGAGGCTGGTGAGACCTGGAGCTGGATCGGACAACAGACGTCTGACTACAGAAACTGGGCCCACGGAGAGCCACTCACCGCTGACTGTGGCTCtttttatcctggaaatgtaacATGGCACAGCAGCAAGTGCTCCGACAAGCTTAGCTTTGCCTGCTACGATGACGACATGGTGGTGGTGAATGAGAACAAGACATGGGAGGGTGCCCTGATGCACTGCAGGGGCATGGGAACCCGGTGTGAGGACTCCTTGGAGCCCTGCACATACCTCTATGACCTCCTGAGCCTGAACGTCTTGTCTAACTATGTCATCGACAGGATCTACAGAGCCACGACCGATGAGGTTTGGACAGGCCTGCGCTTCCTGGGAGGGGAGTGGTGGTGGGCGGATGGAAAACAGCTGGGAGACCAGGGGATGCTGCCTGACTGTCCGTCCCAGTGGAAACACTGTGGGACCCTGTCCAAATACAACACGAAGAACTGGATCACCAGGGACTGCTCAGAAAGAAGAAACTTTGTCTGTTACAAAGTAAACGTCTAATAGTAATCTAATAGTAGCTAATAAAACAAAGTCAGAGCATGTTTAGGTTTTAGAACTTTTCAATTCTCCATTGTTAAAGCCTTGTTTTGTCTGTAGCGGTACACATTGAGCTCTCTCTGTTAGAAGGTTTTATATTCTTTAGTGATCATCTTTTGTTGAAAATAGAAGATTAGGTACTCAGATATGTATATTTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96341 lncRNA upstream 1773 12778230 ~ 12778442 (+) True G72117
XR_005639745.1 lncRNA upstream 9631 12761053 ~ 12770584 (+) False LOC120562335
TU96322 lncRNA upstream 51062 12718561 ~ 12729153 (+) False LOC120563165
TU96245 lncRNA upstream 140426 12639314 ~ 12639789 (+) True G72036
TU96237 lncRNA upstream 183556 12594584 ~ 12596659 (+) True G72028
TU96356 lncRNA downstream 33907 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 44421 12826651 ~ 12883769 (+) True G72134
XR_005639912.1 lncRNA downstream 66245 12848475 ~ 12850425 (+) False LOC120563130
TU96360 lncRNA downstream 66248 12848478 ~ 12851077 (+) True LOC120563130
TU96361 lncRNA downstream 66248 12848478 ~ 12851077 (+) False LOC120563130
XM_039806042.1 mRNA upstream 2489 12773881 ~ 12777726 (+) True gapdhs
XM_039807312.1 mRNA upstream 50989 12711602 ~ 12729226 (+) False LOC120563165
XM_039807227.1 mRNA downstream 1589 12783819 ~ 12788550 (+) True tmem147
XM_039806508.1 mRNA downstream 20246 12802476 ~ 12807616 (+) True LOC120562668
XM_039806509.1 mRNA downstream 20385 12802615 ~ 12807616 (+) False LOC120562668
XM_039806506.1 mRNA downstream 25851 12808081 ~ 12819134 (+) False LOC120562667
XM_039806505.1 mRNA downstream 29683 12811913 ~ 12819134 (+) True LOC120562667
TU96328 other upstream 6776 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1070706 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1163973 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1163973 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1958715 10820295 ~ 10821500 (+) False G71743
TU96452 other downstream 342704 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 685997 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1351381 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1393619 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1643564 14425794 ~ 14426180 (+) True G72506

Expression Profile