RNA id: XR_005639667.1



Basic Information


Item Value
RNA id XR_005639667.1
length 811
RNA type transcript
GC content 0.46
exon number 5
gene id LOC120561932
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33590521 ~ 33602948 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTGATTGTACTGCTTACTTCATCTCCTCAACACCTCCGTGCCGTTCACTGCGGGAACAATGAGGAAGCTGATCTTGGTGGCTTTGATCATTCAACGGGTGATCACAGTCGACACAAATGGATTCCAGTTTGGAGATATAATTTCTTTCAAACCCAGTTGTAAGACGGTTTTGGGGAAAAGCATTACCTACCAGCACTATGCTGTCTATGTGGGCGACAGACCACTCCCTGGTAAAAAAGACGGGCAGAACATATTTGAACGCATAAACAAAAGGccttcctgtgttttctctaAACTGGACATGGCTGAGGAGCCTGAGGTGTTCAATTACCTTGATGGATACAAGGacaagaaaggaaaggagtACAAGGCAGGAACTGAAGCAGAAATGACCGCGCGCATCAACAAACGAAAAGCCAACTGTTGGCCGTATAACTTCTTGGCCAACAACTGTGAACACCTTGCTACCTATGTGCGTTACGGAGTGAGATTTGCACTGCAGTACAACATGACTGGTGAAAAGCACTGCATTAACAACCCATTCAGAATCCGTGCAAAAGATGTGGTGAAGTTCTTAAGGGAAAATGAAGGGTGGCACCACAAAAAAGATCTGCTGATGTACGTATGGGAAAATGAAGAGTGGCTCAACAATGGCACCCGCTTACAAGTATTCCCTCAGTTAACCCTCTCAGTGTGTCTTGCTCTCTTCTGCATTTTCCTTATGTGATAGTCAGGGGCCATTACAGGAAGTGGGGTGACACattccttaaagtgatggttcggagtaattcaccctagggtcctttgcacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104344 lncRNA downstream 2271 33565795 ~ 33588250 (-) True G78061
TU104349 lncRNA downstream 103626 33485308 ~ 33486895 (-) True G78064
TU104268 lncRNA downstream 130277 33460022 ~ 33460244 (-) True G77994
TU104255 lncRNA downstream 303929 33284913 ~ 33286592 (-) True G77984
TU104252 lncRNA downstream 304072 33284913 ~ 33286449 (-) False G77984
TU104375 lncRNA upstream 123376 33720681 ~ 33720916 (-) True G78084
TU104385 lncRNA upstream 139880 33737185 ~ 33871792 (-) True G78094
TU104399 lncRNA upstream 227390 33824695 ~ 33859217 (-) True G78101
TU104392 lncRNA upstream 283700 33881005 ~ 33884726 (-) True G78097
TU104409 lncRNA upstream 309115 33906420 ~ 33908885 (-) True G78110
XM_039805279.1 mRNA downstream 9135 33567858 ~ 33581386 (-) True LOC120561933
XM_039805274.1 mRNA downstream 33556 33515694 ~ 33556965 (-) False atg5
XM_039805275.1 mRNA downstream 33758 33515694 ~ 33556763 (-) True atg5
XM_039807321.1 mRNA downstream 290981 33296250 ~ 33299540 (-) True LOC120563172
XM_039806417.1 mRNA downstream 437478 33134110 ~ 33153043 (-) True ctsk
XM_039805278.1 mRNA upstream 1724 33599029 ~ 33602943 (-) False LOC120561932
XM_039805692.1 mRNA upstream 282468 33879773 ~ 33893809 (-) True eaf1
XM_039806378.1 mRNA upstream 451133 34048438 ~ 34081401 (-) False capn7
XM_039806377.1 mRNA upstream 451133 34048438 ~ 34081401 (-) True capn7
XM_039804986.1 mRNA upstream 497946 34095251 ~ 34097511 (-) True LOC120561752
TU104072 other downstream 1156864 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2071485 31516455 ~ 31519036 (-) True G77573
XR_005639672.1 other downstream 2194018 31239787 ~ 31396503 (-) False LOC120561969
TU104595 other upstream 498338 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 532738 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 895041 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 1377519 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 1414798 35012103 ~ 35014522 (-) True G78444

Expression Profile