RNA id: XM_039805285.1


Basic Information

Item Value
RNA id XM_039805285.1
length 1517
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC120561940
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19116593 ~ 19120701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGGAGATGGAGCATTTGGGAAAAGTAAAGGCCCTTCTTTCTGTGGACCCTGAGCCCTTCTTTCACAACTGTGTGATTGACTTGTGTATGTCTAATGGGAATGAAGAATTGTTTTGCGGTAGTTTGAGAGAGTATACTTTTGCATGCCAGGAGGCAGTAGCTGAGGCCAAAACATGGAGGGGTGAGAAGTGCTCACTCTCATGCCCTGAACACTCTCACTATAATATATGTGTCAGTGCGTGCCCTGAGTCCTGTGGTATTTTATCCGATATCCCCTGCCCATGGGCCTGTTACGACGGATGTCAATGTGAGTCAGGATACATGCAGAGTGGAAATGGCTGCGTCAAAGCTGAGCAATGTGGTTGCTTTTACCTTGGGCACTACTATGAGATTGGGGAGCTATCGTGGGATGAGGGCTGCTCTGAGCGGTGTAACTGCTCTGCCACTGCTACAATGCGCTGTGATCCAGCCTCTTGCCCCGAGGGAGAGAGCTGCACCCTTAACAATACCTGGGGCTGTGCAAGGGAAGATAAGATGTGAAAATGGAGTGAATTGTGGTGTCCAGAGCCAACCTCTGCAAACCCAGTATTGGGTACTGGGAGGCGCCCACTTTTAAACTTTTGATGGAAAGGTCTTTGAATTCCAAGGAAACTGTACCTACATGCTGATCCACATATCCAATGACACCAGTGAGAATATAACATTTTGGGTTGGGGTACAGAAAGACAGGAACTCCAATTAGTCTTCCTCTCTTAAAGCTATTCACGTCAAAGTAGTTAAAGACACTAGTATTACCATCTACAGAGGGGGAAAAGGCTATGCTTTGATAAATGGCGAGAAAAGGCTACTACCCGTGACTCTACAGTTTGGACTCGTAAAGATCTATCAgtggcatttttgtttttgtggattCTAACCTGGGCATCCAAATTAAGTATGATTGCTCTCATACTGCCACTATCCTCCTTTCTACTACAACAGAAGTCCATGGCATGTGTGGTAATAATAATGGCATCAAGGAAGATGACCTCAGGACCCCCGAGGGTGAGGCTGTTGATGCTGCCACCTTTTGGCTGGAGAGTTTCTGATCGGGAAGCTCGGTGCACAGCAGATTGTGGAGATGCATGCCCACTTGCTCTTCTGAGCAGCTGCTGGAGAAAAATGTAGCCAGTCAATGGATCGCCATGCACGAGTACATTTGGTCACCACAAAATCCATTCTACCTGTGCCTGGAAGTTAACTACACTAAAATCTCTGCAGCAGTCAGCCTATTTGACCTTTGCTCTACTGATGACACTCAGAAGGTCCTCTGCCTGGTCTTGGAAGCCTATGCTGCCGCCTGTCAAAATGCCCAGATCCAGATCGGAGAGTGGAGAAATGGCACCTTCTGCCTTTTTCCTCCCATATTGTTAATTCTCATTCGCTCCATCATCTGTTTCCTGCCCACTGAATGGCCATTATAAGTCCTGTGGCTCAGCCTGCCCTGCCACCTGTGAGGACCCATTCAGCGCAAG

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0015929 hexosaminidase activity molecular_function

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series
ko00511 Other glycan degradation
ko04142 Lysosome
ko04614 Renin-angiotensin system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98243 lncRNA upstream 184420 18911394 ~ 18932173 (+) True G73501
TU98239 lncRNA upstream 205377 18908503 ~ 18911216 (+) True G73499
TU98232 lncRNA upstream 242636 18872374 ~ 18873957 (+) True G73493
TU98215 lncRNA upstream 254755 18860328 ~ 18861838 (+) False kmt2bb
TU98224 lncRNA upstream 287905 18826582 ~ 18828688 (+) False proser3
TU98334 lncRNA downstream 4455 19125156 ~ 19125848 (+) True G73568
XR_005639800.1 lncRNA downstream 27820 19148521 ~ 19158369 (+) False LOC120562630
XR_005639799.1 lncRNA downstream 27822 19148523 ~ 19158369 (+) True LOC120562630
TU98341 lncRNA downstream 27912 19148613 ~ 19158995 (+) False G73570
TU98342 lncRNA downstream 27912 19148613 ~ 19158995 (+) False G73570
XM_039806433.1 mRNA upstream 15519 19095468 ~ 19101074 (+) True fxyd5
XM_039805284.1 mRNA upstream 26634 19021154 ~ 19089959 (+) True nphs1
XM_039805431.1 mRNA upstream 160556 18934230 ~ 18956037 (+) True zmp:0000001114
XM_039805421.1 mRNA upstream 254635 18833245 ~ 18861958 (+) True kmt2bb
XM_039805423.1 mRNA upstream 254635 18833245 ~ 18861958 (+) False kmt2bb
XM_039806430.1 mRNA downstream 8823 19129524 ~ 19147793 (+) False LOC120562624
XM_039806431.1 mRNA downstream 8893 19129594 ~ 19147793 (+) False LOC120562624
XM_039806432.1 mRNA downstream 10790 19131491 ~ 19147793 (+) True LOC120562624
XM_039804865.1 mRNA downstream 69378 19190079 ~ 19192102 (+) True hcst
XM_039804867.1 mRNA downstream 69399 19190100 ~ 19192102 (+) False hcst
TU98057 other upstream 369918 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 462956 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 479286 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 27912 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 27912 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 526274 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1887332 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2282426 21403127 ~ 21404603 (+) False crot

Expression Profile