RNA id: XM_039805295.1


Basic Information

Item Value
RNA id XM_039805295.1
length 4930
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC120561949
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12427541 ~ 12455916 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAACTAGCGGGAATGCTTAATGGAGCCACAGGCACTCCTGCTGCCGTCTCGACAGAGAGTTGTTTCACTTTACTCCGTCTGTTTCTGAACTTTTCACGGCAATAACACTATGGACCCGCCATGGGCTGACACCGGCGCTCCGATACGGCATGCAAATACGTACTCTGACGTCGGCGATCATGTGGCTTTTGGCGTAGATCCTCCTTGTGATCGCCAATTTTTTCTTTCCTGTCGCCTGTTGTCTGCTCGGTTATTGGACCGCCGCGAGAGTGTTTGAAACCGATTTGGCTTATTTCTGGGTCTAGCAGTCGCTTTGGGATTGTACGCACTAACCTGAGCGTCGCGCCAAAACGGTGGGCAGGTAGCATCCTGTCATGCAGTTCCAGGAGGTCGGCCAGCACCGGAGCTGACACTGTCAGTGATCCCGGCCTACACTACACCACACCAGTCCCATCTCCGCCAGGCCTTCACTTACTCTCGCTCCAGCCACTAATCTTACCCCTGGGGAAGACTGGTCTTCAGACACTCATCCCAGAAACTGTCCTGTGCTCGATACCTGTCCTATTAAAAAAGAGAGCCCAGTTCTGTATCTGGGTCCCAGTACGAGCCAGGCCTCCTGGCTATCCTTCGGTACCTGAAACTGATTATCCACCCAGCCCTCTGTGATAGTAGTCCTGCATTCTGCACCCTGGGCCCCTTAGCCTCCTTTATATCACCACGGGCCAATCAAAGGCACCAAGTGAGGGCAGCTGTCCACCCAGACAAACCCAGGATCCATCATCATGTCGAGTCGACGGAAGGCTTCCACTCCCTTAATGATCCGACCAGAGCAGACCATGGTGGAGCTGGATGATGACACCGAGGACGACATGGAGACAACAACGGAGAACCATGCTGAGGAGGGACCTATGGAAACAGATCTCTCAACAGAGGCAAAGCCCTCTGTGGAATTAGACCTGATGGGCAAGGCCTCGGACCCTCCCACGGCTCCAGACAAACCAGCCACCGAGCCACCAGACCTCTCCAAGCCTCAGCGCAGACAGCAGGGGGGCTACGAGTGTAAATACTGCCCCTTCTCCACACAGAACCTCAACACTTTCAAAGAACACGTGGACGCCAACCACCCTAACGTCATCCTCAACCCCCTGTACCTGTGTGCCGTCTGCAACTTCAGCACAAAGAAGTTTGACACCCTGACCGAGCACAACGAGAGGTGTCACCCAGGGGAGAGCAACTTCAAATTCAAACGCATCAAAATGAACAATCAGACAATCTTGGAACAGACAATCGAGGGGTGCAGTAACAATGCAGTCATTTACAACACCTCCAGCGCCATTTCTGGCAAAGGGGACGAACAAGGCACTCTGCCGCTCAGCAAACCCACCACAGTCAAGATCGGTAAACCGAAAATAATGTCGCCAGATAATAAGCGGACAGATCTGGCCAAGAAACCAATCACAGCCGTCAACGTGAACGGGACGGTCATCATCCCGGAGTCGACTCTACTCAAAGCAGAAGGTCTTTCTCACATCATGCCTTCCCTCCAGCGGCCTCTAAACTATACTCAGGTGCCGAAGATCGCAGTGCCCCTCAACACAAGCAAATACAACCCTTCGCTGGACGACAACCTGACGCTCATCTCTTCCTTCAACAACTTCCCCTACCCAACGCAGGCTGAGCTCTCCTGGCTCACCGCAGCCTCCAAACACCCAGAGGAGCAAATCAAAGTCTGGTTCACCACACAGAGGCTCAAACAGGGCATTAGCTGGTCACCTGAGGAGGTGGAAGAAGCCAGGAAGAAAATGTTCAACGGTACAATCTCCTCCATGCCTCAGACCTTCACCGTGGTAGCTTCTCAGCTCAACTCCCAGCCATGCAACCCGTCTGCCCCCACCGCGGCCTCCAAAGCCATGCAGTCGGCAGCGTCTGTCCTGCAGTCCCTCCCCTGTCACCTGCTGGGACAGACCAGCCTGGTGCTGACTCCTGTAGCTAACGGCTCCACTGTCACGTGTGCGCCGCTGGCACTCACCGTGGCTAACCAGGTGGCACAGTCGCTCAAACGACCCCTGGCCTCCCCTGTGATCGCAACGGAGACCAAACGGCCCTCCATCATTCAAAACATCTCGGCACCCATGGCCACATCCAAGCTGGCATCACCCAAAGTGCTGAGTTTTACAGTTGACCCCAACAAAACCGACGAGCAGCTCTCAGTACTGAGGTCCAGCTACACACAGTGTCCTTTCCCCGAGGAAGATGAGATCTACAGGCTGATAGAGACCACCGGGCTGTCCAGAGGAGAGATAAAGAAGTGGTTCAGTGAACAGAGGCTCCTTAATCTCAAAGGTGTTCCTCCACCTCCAGTGTTGGTGAAAGCAGAGGTGACACCAGCACCCAAAGATGGTCCTGTAAAGAAGGCGGTCcccagccattttcccctgctGGAGAGGGTGAAGGGGAAGTCATCAGAACAGCTAAAAGCGCTGGAGGAGAGCTTTCAGAGAAGCGGCACTCCAACAGAGGCAGTGCTAGACCAGCTGGCCCAGGAGACCAGGCTGTCCAAGACGGAGGTGGACTGCTGGTTTTCCGAGCGCAGGGCGCTGAGGGACAACATGGAGAAGGCTTTACTCTCCATGTCTGCAAAGAGCACAGAGGAGCGAGCGGAGCGGCCGGGAGCGCTGCTGAACGGCGCTTCACACGGAGGGAAACCTCCACGCTGCTCTCCTCAGCCacctgtcctctcctcttcctcctcttcatcctcctcctcccctcctgtgCTCGCAGCCTCCTCCCCTCATCCACcaaccctctcctcctcctcggcatctcctcccatcctcacttcctcctcctcctcttctccccaTCCTCCCATCCTGTCAGCCTCCACCAGCCCAGCTCCCATTACCAGCCGCTCACTCAGCCTGCTCAGAGAGATGTTCTGTCGGACTCAGTGGCCATCTCCCGAGGAGTACAGCCAGCTGGAGGTCCAGACAAGCCTTGGGCGCACCGACATTGTCCGCTGGTTCAAGGACCACCGCTCGGCACTGAAGAACGGTGAAACTCTGGACTGGATGGAAAGTTTCCAAAACCTTGTAGAGGAGCAGAAAGCAGGCCAGGAACAGAACGGCCAGAGTCCTGAGAAAAAACAGAGTGTTTCCTTGGAAGTCCCAGCTGGGAAAGCCGTTGGTGCAGTGGAGGAGGCCATTGAGAacacagcagctgctgcagagCACTTCAAGCTGTCCGACCAAGACAAAGTCCAGTGGTTGACTGACAGATTAGCCCACAGCGTGACGGACCTGAGCCGGACCAGGCCGGACCAAACCAGCTCGAGCACTGCTGACAAAGGGAGGTGGGTAAAGGTGACTGTGGCAGTGGGGGAGGAGAGTGAGGCGGGAGTGGAAAGACCGAGGCTGGCAACAGACACGGAAGTTCTGAGCTTGGAGCAACCTGGGAGGGTCATTGGTTGACGGTCGAGTAAATCATTGACTGCTGAGTCACCGACCATCATGCAACGACTCAAGATGTGGACTCAGTAATGTAACTGTCTGCCTGTGATGTCATCACAAAGCGCCAGGGACATTGGAGTTCCACCGTTAAAGCACTGACTGATGTTTGGTGCAGATGGGGACATTAAGAGGAGTGCCAAAGCTGGACTTGATGCATTGTTCTTACTACtgttacttttttctttttctttttttaaagaagcacccttgtaaatatttttctgtattacaaaaaaaaaaggtttgtacAGTTTTTCTGGGAGGGCaagttttgttacatttttttaaaagaatagtCATGACCGGTGCCCCAAAACCTggaatgttttgttgttgtgttgtttaagATCAAAGTGTATTATAGTGTGTTATTCGCTGAAAATCAGCCCTATTTTTAAATCATACCTGCGCACTACTCATTATGAGTAGACTTGGGGGGCACTTGCATAATATATTCCTGTGGTAGTGATAGATAATTACATCTCAAACTGTTGTGAAACCTTTTCCTTTTCTCCTGCAGCGTTGACTCGCACTTGCATAGAAATATGCTGACGAAGGTGAAAATCACTCCGAGGTGCTCGAGACGCAGCTAAAAGGAGCGACCGTGTTTTACATACAGGAACATGTATCGAGATGATTAATCACATAGAGAAGAGAGTGGAGTGTCTGTTTGATCGCACCATGCTGCCTTTTCGGCTTTCTTTACAGACATTTGCCGTCTGCTTCAGAACTGGGTACAGTACGGACCGGTTACAGTGATTTCAGCTTTTCACGTCTTTGTTTTAAAAACTTGAAATATTCTCGATTGAATTTGCCAAGAACCTTTAGGTAAAGTAGTTTTTACGCATGATAAAACTGAAGCTCCTGCGATCTGTAAACGCACCCCTTGTGTTCTCTCTAGTCTTTCTGGCTTCTGGCTTTCCAGCTGTTCAAAGCTGGATTGGTGTACAGTCAGGTCACCTGAAGTGGTCGTTCATGAAGCTCCTGAGTTATAGAGAGAAATTATCAGACCTGTgctgatttaattttttttgaagaACGGCACAAAAAAAGCATTGGAATATCACAACAGCCAAAGCTGTCATGAACTTATTGcatgttcattttaaacaacTAATTTTCAAAAATGATTTAAAGGGATATCTGTGATTCTATGGGTCAAATTGCAAACGCTTGCAATATTtgtgcagcaaaaaaaaaagttgagttGAACGGTCATTTAACCCTGGTTTGAACAGCAGGTGTATGACTGTTTGCTGGCTgaatgtctgctgctgctgcttttagtttCATGTTCAAACAAGTATCTGGGATACTGTACATTCGGTTGGTTAGAATGGAAAACTgcttgcatttttcattttgtactTTTAAGTCTGCTGTAACTCAATAAATAATACACAACCAACTGTAAAA

Function

GO: NA

KEGG:

id description
K24880 ZHX2; zinc fingers and homeoboxes protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639635.1 lncRNA upstream 55760 12370724 ~ 12371829 (+) True LOC120561687
TU96161 lncRNA upstream 74098 12353010 ~ 12353491 (+) True G71969
TU96153 lncRNA upstream 96627 12330068 ~ 12330962 (+) True G71961
TU96151 lncRNA upstream 151648 12273394 ~ 12275941 (+) True G71959
TU96145 lncRNA upstream 211029 12216263 ~ 12216560 (+) True G71953
TU96184 lncRNA downstream 30559 12486475 ~ 12486757 (+) True G71987
TU96186 lncRNA downstream 31721 12487637 ~ 12487865 (+) True G71989
TU96198 lncRNA downstream 46595 12502511 ~ 12633773 (+) True G71995
TU96209 lncRNA downstream 62747 12518663 ~ 12520005 (+) True G72006
TU96221 lncRNA downstream 81394 12537310 ~ 12540551 (+) True G72018
XM_039805711.1 mRNA upstream 451643 11970877 ~ 11975946 (+) True LOC120562168
XM_039806390.1 mRNA upstream 658664 11721116 ~ 11768925 (+) False LOC120562594
XM_039806899.1 mRNA downstream 10033 12465949 ~ 12476564 (+) True tbc1d31
XM_039806900.1 mRNA downstream 10033 12465949 ~ 12476564 (+) False tbc1d31
XM_039806901.1 mRNA downstream 10033 12465949 ~ 12474126 (+) False tbc1d31
XM_039805266.1 mRNA downstream 22982 12478898 ~ 12484912 (+) True LOC120561925
XM_039804996.1 mRNA downstream 88580 12544496 ~ 12546473 (+) True mrpl32
TU96107 other upstream 718080 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 811347 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 811347 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1606089 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1606172 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 304901 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 669018 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1012311 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1677695 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1719933 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile