RNA id: XM_039805376.1


Basic Information

Item Value
RNA id XM_039805376.1
length 4265
RNA type mRNA
GC content 0.53
exon number 12
gene id mios
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31163419 ~ 31175385 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCTGACATTCCGAACATGACGGACATGTTTTGGTGTAACACACAACATTCACTGGGGCTCGAAGTGCCCCTGTCCGACATGTGCATGCCAAATCGCATTTCACCTGCCCGTTTAAACACTCTGAGTGtttttaagtaaGTTATAGAAGGCAGAATTCCTTGAGATTCTTCTAGCTGCTTCTGAATCATGAGTGGCTCCAAGCCGGACATCCTGTGGTCTCCCCACCACCCGGACCGCTATGTCATCTGTGACTCTGAGCTGGGACTGTACCGTATTGGACCTGTGGGCAGCTCAGAAACCAAGGCTggcactctccctctctctgaagaAACTGCTGCTACTTTACTAGCCATTAACTCTGACACCCCTTACATGAAATGTGTGGCCTGGTACCCAAAGCATGAGCCTGAGTGTTTGCTCGCTGTTGGCCAGGCTAACGGCAGAGTGGTGCTCACCAGCCTGGGTCAGAGCCACAACTCCACGTGTAAAGAGCTGGTGGGGAAAGAGTTTGTGCCCAAGCATGCCCGTCAATGCAACACTTTAGCTTGGAACCCGGTGGACAGCAACTTGCTGGCTGCTGGGTTGGACAAGCACCGGGCAGACTTCTCTGTCCTCATATGGGACATTAGCAGTAAGTTTTCTTCAGAGGCCAGTGTAGCCTCTGAGAAGATTCGTCTCTCATCTGTGGATTTGGACTCGAGCTCAGTAGTGACCAAACCATTGTATGAGTTAGGCCAGAACGATGCTTGCCTGTCCCTCTGCTGGCTGCTTCGTGACCCAAAGTTGCTGTTGGCTGGCATGCACCGGAACCTCGCAATATTTGACCTGAGAAACACAAGCCAGAAAACGTTTGTCAACACTAAGGCCATCCAGGGAGTGACAGTCGACCCACACTTCCCTGACCGTGTGGCCTCTTTCTTTGAGGGCCAGGTGGCCATCTGGGATCTGAGGAAGTTTGagaagcccgtgctcacgctcACTGAACAGCCTAAACCGCTCACTAAGGTTGCTTGGTGTCCAACCCGTAACGGTCTGCTGGCCACACTGACCCGTGACAGCAACATCATACGCTTGTACGACATGCAACACACTCCTACACCCATTGGCGATGAGACGGAGCCCACCATCATCGAGCGAAGCGTGCAGCCCTGTGAAAGCCAGATTGGCAGCTTTGCCTGGCACCCGTCTTCTCAGAACCGCATGGTGGTGGTGTCAGCAGCCAACCGGGTCATGACTGACTTCACCGTGTTCGAACGCATCTCGCTGGCCTGGAGCTCCACCACCTCGCTCATGTGGGCGTGCGGCAGACACCTGTACGACTGCGTGGAGGATGGAGCTGAAGGAGTGGAGAGCGTGATTGAGAAAGACATCGCCACTAAGATGAGGCAGAGGGCTCAGTCCAGGTACGGGCACGACACCGTCCAGGTGTGGAGGAACCACCTGCTGGCGGGAGGGAATGATCCCCAGCTCAAGTCTTTGTGGTATGATCTGTTCTATATGAAGCAGTGTGCAGAGGATATGGAGCTGAAACTGCAGGGGAACAAACAGTCGGTGGTCTACTCTGGTATCAAGAACATTGTAAAGACCAGCTCAGGCACAAAAGAGAGCCGGAGATGCTGGAGCGGTTCAGACCGCCAGACAGATTTGCCGCGGTACGACAGTGAGGAACGCTGCCTTGCCCTGCGGCTCTGCGGCTGGCTGAGCCGGGGTCCTGACATCGGTGTGGAGATATTTCTGCGATCGCTGGAGCAGGAGCGTGAGTGGGAGCGGGCAGCCGCCGTGGCTCTGTTTAACCTGGACATCCGCCGGGCCATCCAGATCCTCAACAAGGGAGCCACCGCTGAGAAGGGTGACCTGAACCTAAACGTGGTTGCCATGGCTCTGTCAGGCTACACTGATGAGAAGTCCTCCCTGTGGAGGGAGATGTGCAGCTCTCTGAGGCTGCAGCTGAAGAACCCCTACCTTTGCGTCATGTTTGCCTTTCTCACCAGTGAGCCTGGAGCCTATGATGGCGTGCTGtaTGAGAGCAGTGTTGCTGTACGGGACCGAGTTGCCTTTGCCTGTATGTTTCTCAGCGACGCACAGCTGCCTCGATACATGGACAAACTAACCAATGAGATGAAGGAGGCGGGCAACCTGGAGGGCATCCTGCTGACGGGTTTGTCTAAAGATGGCGTAGACCTCATGGAGAGCCACGTGGACCGCACTGGCGATGTTCAGACTGCCAGCTTCTGCATGCTAAAGGGTTCCCCAGGTGAAGTGTTGAAAGACCCTCGAGTCCAATGCTGGATCGAAAACTACCGCAACCTGTTGGATGCATGGAGATTCTGGCACAAACGGGCCGAGTTTGACATCTATAGAGGCAAACTGGACCCCAGCTCCAAGCCACTGGCCCAGGTGTTTGTGAGCTGCAACTTCTGTGGCAAGTCTATCTCCTACAGCTGCTCGGCGATGCCCCACCAGGGCCGTGGCTTCAGCCAGTACGGTGTCAGCGGGTCACCCACCAAGTCCAAAGTCACGAGTTGCCCCGGATGCAGGAAACCGCTGCCACGTTGTGCCCTCTGCCTCATGAACATGGGAACACCTGTTTCTAATTGCCCAGGAACAGGGAAGTCAGATGAGAAGGTGGACTTGACAAGGGAGAACAAACTCGCTCAGTTCAACAACTGGTTCACCTGGTGTCACAACTGTCGACACGGCGGCCATGCTGGCCACATGCTCAGCTGGTTCAGAGACCACACAGAGTGCCCAGTGTCTGCTTGCACGTGTAAATGCATGCAGCTGGACACCACAGGGAACCTGGTGCCTTCAGACAGCAGCTAAACAGGATACGCTTGTCGAAAAGAGAAGCCAAACATCAGCCCGAAGCCAACCAGTGCAGGTTCACTGCTGCACCTGCCACACCGACAACTGGGCAAGAGACAAAGGGTGCCAGCAGTGTCCTTCTCTGAAGTGGCTGCTTAAATAGAATGACATACTGATAAGTTATAGTCTAGTGAATGTAATTTTGTAACAGAGCTCTATATGAAGAAGGGAGGCAGTGTGTGTTACTGATCTGACTAACTGAATCAATGACCGAAAGGGAGCGAATGCAAACTCACTGCTCTGCTAATGTAAATCCCACTCAGGAGAAATACAAGAGGCTCTGCTGTAATCGGCCTCTTCCAATCTAACCTGAATCAGGCTTATGGTTTTATTGTGatctatgaaaaaaaatcaaatgtccACTCACACATCAGGTTGTAAAGATGTGATCACAGGTGCCAATATGTCCAAGCTATATTTTGTGGTGTTTTAATACGCTATTTAACGTCTGTGTTTGTCTTACGGAAGGATCTTCATTCACATACCTCACGAAAGCATTGTTCGGGGTGAAGGACGGTACCCCGGGTGACAGAGCGGAGTGTAgcgcacaataaaaaaaatgtcttgctCTCTTCATGTTCCTCTGTGCCCCTCTTCATCTGGCACTGTGCGGGAGAGTTTCCATTGTGAGGGGTGGTTTTGGGGGAGAGGATGAGGAATCGGAGAAGGTAGGGGTGATGAGGAAGATGGGTGGGAGGGTGCGTCTGTATTCACCAGCCTACTCCAGGCCTGTGGTCCATGAAAGAAGCTCGCCAGAAAACAGCAGCTGCTCGGCATTCTGACAAGACCCTCCAGATTGTTCCCCTCATAAAGAACCTCAGCTGCCGGAACACTATTGACTCAAAGAGAGGGCGAGAGAACAGACAGCCTGAGCCCTGTACCCCCCCCCTACACCCTCCGACATACACAGACTtgccctctctttctttctccctctctgtggtGCCCAAATTGCACCCAAAAACTATGCATACCACACATCAATCCAAGGATGGGCGCCGTCTGTGGGGGGATGGCCGTGTGTAAGCCGCATTGTAAATgggttttctctctttctctgccacCCTCCCCACTCTGTCACTAACCTAGGGAGGCATTGTAAGTGAGAGGCGGCCTGCACCAGAGCTGGCTAAATCACTTAGTCATGGAgtagggaggaggaggtgaggatgatgatgaggggggggggcacaggAGCTACTGTATGCCGCTTTCACCAGAATTTCTTCCCGGTGTGGGAGGTTTTATAGGCCTGCATGCCCTTTTGTGAACTATTTTGGAGTTGGGCTGACAAATTGGCGAGCCGTGTAGCATCCCAAAAAACAGGGTGGCTGGAATTTCATCCTTTCAGTGTTTCTTGTGTTTGCCTTTTAAATAAATTCCGACTGACAAATAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639812.1 lncRNA upstream 146973 31015133 ~ 31016447 (+) True LOC120562710
XR_005639811.1 lncRNA upstream 174687 30978327 ~ 30988733 (+) True LOC120562708
TU103534 lncRNA upstream 186339 30976741 ~ 30977081 (+) True G77399
TU103458 lncRNA upstream 431820 30687338 ~ 30731600 (+) False rab5ab
TU103334 lncRNA upstream 760716 30398276 ~ 30402704 (+) True G77260
TU103737 lncRNA downstream 338751 31514136 ~ 31514561 (+) True G77555
TU103736 lncRNA downstream 342378 31517763 ~ 31518618 (+) True G77554
TU103740 lncRNA downstream 349798 31525183 ~ 31525583 (+) True G77558
TU103778 lncRNA downstream 435673 31611058 ~ 31611311 (+) True G77591
TU103779 lncRNA downstream 437096 31612481 ~ 31614315 (+) True G77592
XM_039805380.1 mRNA upstream 32336 31114749 ~ 31131084 (+) True si:dkey-256h2.1
XM_039805386.1 mRNA upstream 78903 31065765 ~ 31084517 (+) True sept7b
XM_039804660.1 mRNA upstream 119013 31024984 ~ 31044407 (+) False LOC120561533
XM_039804659.1 mRNA upstream 119014 31024984 ~ 31044406 (+) True LOC120561533
XM_039806561.1 mRNA upstream 166985 30989462 ~ 30996435 (+) True LOC120562709
XM_039805381.1 mRNA downstream 1404 31176789 ~ 31201260 (+) True LOC120561996
XM_039805382.1 mRNA downstream 1404 31176789 ~ 31201260 (+) False LOC120561996
XM_039805383.1 mRNA downstream 1404 31176789 ~ 31201260 (+) False LOC120561996
XM_039805384.1 mRNA downstream 1453 31176838 ~ 31201260 (+) False LOC120561996
XM_039805385.1 mRNA downstream 1453 31176838 ~ 31201260 (+) False LOC120561996
TU103600 other upstream 27274 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 1038782 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 1751007 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 1773528 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 1833162 29328789 ~ 29330258 (+) True G77009
TU103881 other downstream 800933 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 1229748 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 1229748 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 1925028 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 2450546 33625931 ~ 33626002 (+) True trnap-agg_3

Expression Profile