RNA id: XM_039805381.1


Basic Information

Item Value
RNA id XM_039805381.1
length 3449
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120561996
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31176789 ~ 31201260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGGATTTACAGCCTGTTTAAGAGGATGTCAGCCCCCAGCAACTCGCTTCAGCAGCCGAGGGTGAGACGCAGCAATGCGGGCTCCCCCGGCTcgtacaacaacaacagcagctgccGTTTGCACCCCATCCGTGCCACCGTGCCCTACCAGCTCCTGCGTGGGGGTCAGAGCAGCCCGACGCGGTCACAGACCCTCTACAGTGGTGCCACGAACAGCAGGGGCTCAAGTCCCCCCTCCAGCCCGTCACTCAGTTCAGGAAGTGCAAACGCTAAGCAAAGACTGTCCCCCGAAAATAAGGACTCCTCTTGTCCCCCAGACTCTCCAGTTTCCAGAGCAGAAAGGTCCAAGTTACAGGTTCGGAGTTCCAGTGCTATCCGGCGGACATCTTCCCTGGATGCCATCACAGGGCCATACCTCACTGGCCAGTGGCCTCGGGACTCCCATGGACCCTACCCTTCATGTATGAAAGACAAAGCCACACAGACTCCAGGTCTCTGGATTGATGAGGGAGCAGAACAAGGAAGTCCTCACCAGCGGTCAGCCTCCTGGGGCAGCGCGGACCACCTCAAAGAGCAGATTGCTAAACTGAGACTGCAGCTGCAGCGCAGCAAACAGGTCAGCCGGCAGAGCAAAGACAGGGAGCAAAGCTCCCTGCAACTACAACAACAGGCACAGCATGGCACTGCATGCCAACCGCAGTACAAGGGAACTTCATCCGCCCTGTCAACAATCCCTGTGCCAAAATCCCTCATATGCCGGGTGCCGAGCAGTGTGGAAGGCATCAGCCACGAGCTAGAAAATGTGTTTATCAGAGAGGACTGGGAGCAGGGGATACAGGCCATGGATGTGGTGGATGGCCGCCGCGCCCCCTTCCCTCTGCATCACTACAGCAGCAGTGGGGACACGCGTGACACGGACACACAGGCCCCTTCAAGTGACTCCAGCCCATCGCCCCGCCCCTGCTGCTCTGACCACGTCCACTCTCCTGATGGAAGCCCGTGCTCTGCAGAGGAAATCGACAAAGACAGTTTGTGCAGTTCTCCTCTCCCAAAGTTTGCCACATCTCCCAAACCTAACAACAGCTACATGTTTAAACGGGAACCTCCAGAAGGctgtgagagggtcaaagtgtTTGAGGAGATGGTGTCTGGCAAATCAAAAGGCTTCCCTCTCTTCTCATGCCCTGACAAAAACAAGGTGAACTTCATTCCCAGGGGCTCTGCCTTCTGCCCTGTCAAACTCCTCTGCTCCTCCCTCTTCTCCCCCGTCTCTCCCTCGTCCTGCTCCTCTGACAGCCCAGGGCCTCAGGTGACCCCAACTCTGCCAACTGCACCACTAGCTACTTTTCCGGCCTCCGCTGACTGGAGCACCAACACAAGCACAGGCATAAACATAGACAACAGCACAGACCGCCAGAGCCCCGACACAGATGTGGGGAAAGATGGCTCAGCACAAGTTCTCCTCACCAGCTAGTTCTCAGGTATTCATAACCAAACCACCTACAGCTGAAACATTACAGCTAGTCAAGTGGTAtggtttaaaacaaaaaaacaaaaataaaaaaatccttgCACTCAGTTAATCTTAACGTTAGCCAGCAGGGAGTGCCCAAGGTCTAGAAATGACAAACATAAAGTAGGAAGCATGATTGTTTGGTCATTGTCGTCCAGTTTTAGGAGTGCTGACCTTGGGCACAGCCTCCATTTACCCATCACTAACCTAGCCTTCTCATCTGTACCGTGACAACACCCATAACAAAAACAGCTTTGCTTTCtgttgcaaaaaaagaaaaaaaaaaagaaattacttCTCAAGTGATTGTGTTACGTGGCGCCGGCAGTTTTATAAAGATTTAATTAATGGAAAAAAAGCATCTGCACACTCAAGTCTGTGCAAGATCTATTTAATTTAGCAAGCTTTTGGTCAGAGACTTTCTTCAAGGCAAAAACCAGTAGCAAGTCTTGCTACCTGTTCTTGTAGCTCCAGCACCTCAGCTAAGCCTGATACAGGGCGAGCTGTGTTTTTTCTCTCAATTAAGAtgaaattaaaaaggaaaaatcgtAACTAAAATAATACACTTTCTCATGTTATCTAACCAGCTTATTGGCTGTTCGGTGTTCAGCGAGCTAACATCTACGCGTAAGCTTTTTGACATGACGGGAAATGCTCGATTCATGTATTTAGCATATCAGGATGTCTTACAGTCAGAATACATTGCCCCGCGTTAACCACAATGTTTGCACTTGTTGAGTCATTGGCTCAGAATGATACAGGCCATggcctatttttaatttaaaaatatttgtagCACAATGTCTTTGTGAAACCAGCAGTTGCTTGAATGCTCCACCCAACAGCTTTTCTACTTTGATCACTATGAAAACTTGGTTAGCTcaacacaaaatgcaaatatCAGCTTTTACAATGACCAAATAACCAATCACAAAGAGCTCACCTCCCCCATTGCCCTGTTTTATTGTCCCACACTATACATAACAATAACTCAGGTTATGTGGAATGTACTTGCATGGACTATGTTGCCTTTCCCTAGTGTTTATAACTTTATTCTACAGAAAGATATTCCAGTCTTTTgcagaaatgttttattttttttccctggAGAGGGAGTTTATTATGGTCTTAATTAACCGATTGGTGTCACATCTTGTGACAGATGACTTTTGCGTTAAACCTGTTCAGGTTAGAGTTTCAGGTGCTACGACACATTCCAGAGATCGCCGTTGCATAGGTCAACCGTGAGTACTCTTGTAAGCGGAACTAGCTACATAAGCTACATCCTTCCAAATTGAGAAGTTGAcaaatatgttgtttgtttCACCCCTTTGTTAAATATGTACCAAAGCAATTTGCATAACAATGACAGGCCTGTCATGTATTTGGGACAGAAGAGGCACAATTTTTGTGCCAGAAGCAGaatgtttatttgcatttcGTATAGTTTATAAACAGTTCATCGACATATAAACACTCGTTGAACCAAGCCTAAGCACTTACTTGGAAGGTAGATGATAatcactatttttttattttagaccaATTTGTAAGTTAAAACAATCAGAACTTGAGTGTGCAATTGATTTTTGTTTGAAGTAAAGCTACACTAACAATTTTTGTGTAACACAGTTTGGTTCAATATTCAGATCCAACCAGACATGCCCCAACGTTACCTGCAGACCTTTTATCCCCAGAACATGACTGATTTAGAACAGAACAACAGAACAAAATGTTGGTCTATTAAGCCACttgcacacagaaacacaaatatgAATAATATGCAACACATTCCACAAAAATTAAGTTGAAATATTCTCTTCTGCTTGCAGCTCCAAGAGTTTCAATCATACTAACTGATTTTATTCACAAGCTGTGTATTACGCATTTTATGTAgatcttgtgtgtgtttttcaataaagaaaacaaagtcTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639812.1 lncRNA upstream 160342 31015133 ~ 31016447 (+) True LOC120562710
XR_005639811.1 lncRNA upstream 188056 30978327 ~ 30988733 (+) True LOC120562708
TU103534 lncRNA upstream 199708 30976741 ~ 30977081 (+) True G77399
TU103458 lncRNA upstream 445189 30687338 ~ 30731600 (+) False rab5ab
TU103334 lncRNA upstream 774085 30398276 ~ 30402704 (+) True G77260
TU103737 lncRNA downstream 312876 31514136 ~ 31514561 (+) True G77555
TU103736 lncRNA downstream 316503 31517763 ~ 31518618 (+) True G77554
TU103740 lncRNA downstream 323923 31525183 ~ 31525583 (+) True G77558
TU103778 lncRNA downstream 409798 31611058 ~ 31611311 (+) True G77591
TU103779 lncRNA downstream 411221 31612481 ~ 31614315 (+) True G77592
XM_039805377.1 mRNA upstream 1404 31163419 ~ 31175385 (+) False mios
XM_039805375.1 mRNA upstream 1404 31163420 ~ 31175385 (+) True mios
XM_039805376.1 mRNA upstream 1404 31163420 ~ 31175385 (+) False mios
XM_039805374.1 mRNA upstream 1404 31163420 ~ 31175385 (+) False mios
XM_039805380.1 mRNA upstream 45705 31114749 ~ 31131084 (+) True si:dkey-256h2.1
XM_039805332.1 mRNA downstream 225499 31426759 ~ 31435057 (+) True tmem106ba
XM_039805699.1 mRNA downstream 243528 31444788 ~ 31449451 (+) True vwde
XM_039806157.1 mRNA downstream 295783 31497043 ~ 31498486 (+) True si:dkey-30e9.6
XM_039805701.1 mRNA downstream 299570 31500830 ~ 31504662 (+) False arl4aa
XM_039805700.1 mRNA downstream 299587 31500847 ~ 31504662 (+) True arl4aa
TU103600 other upstream 40643 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 1052151 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 1764376 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 1786897 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 1846531 29328789 ~ 29330258 (+) True G77009
TU103881 other downstream 775058 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 1203873 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 1203873 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 1899153 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 2424671 33625931 ~ 33626002 (+) True trnap-agg_3

Expression Profile