RNA id: XM_039805417.1


Basic Information

Item Value
RNA id XM_039805417.1
length 1941
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120562012
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11599114 ~ 11616059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGATTAGGATAGCTTCATTTttcccatccctccctctcgtttctcttttccctcttcTGTTTTTCGCTCTCTCATATATACGAGAGAGACAAGAGCCCCACATttgacaaatacaaatatactaCCAACCACTACTACAGCCATGGCATCCGCAGGCAGCAGGAAGAAGAGCCCCGGCCTCCTGGATCAGATTGGAAAGTTCTTTGAAGGGGACaagaagaggaagagcaagGGATCTTTCCGAGGTGCTCTCTCTCCAGGCCCTCAGAAAGCCTCTGCGTCTGCCCCACGCAAGCGCGGAGCAGAGAACGCCGTGGTCCACTTCTTCCGCACGATCGTGTCCCCTGCCCCTCCCAAGTCTAGGTGGAGAGGACTAGCAGCCAAGATGGGCCTGgGCGACCAGAAGTCACAGTCTGCTAAAGCCAAGAAGGCCAGTGCAGGGGACGGCAAAGGCTCCCTGACTAGGATCTTCAAAATGTGATGATATCAGCAGCGGAGGAAGCAGGAGCGCTTCTCCAGCCAAACGCTGAAGTCCCTCTCTACAACCCCTTCCAACAGCACGAGGGCAGATGTTCAAGATCACGGGGctaaagtgttgaaaaagaggaaaaaaaagaaaaggaggaaatcttgccaccccctccccccccccctccccttaaACTCACCGTCCCCTCCACCGCTGATAACACTCTAACGTACGCTAAATCCCTCTTCTCCTCTATTACCTCCCCATACCCTTTGGCTGGTAGATAGCGACACAATCtgttgccccccccccacacacacccccccttGCATGCGTTGTGCTGAGTCTGTgcagtcatcatcatcattagcGTGAACTTTTTGCTGAAATTGATCCCGAAGCCGCTCACATGTGCAGCCCGAATGACCCCGGAATGACCCCCACTCCCGCAATGGCTCTCTGTACTCATGCTTGAGTTTCTGTGGACGTCTCCGATGGTTCCTCTAACAAAAATGGTGGCTGAACCGAAGCACGCCCGGAGCAGGTGAAGGATTGCGGCCGGTGCGAGTCCGACTGACTCGACCGCCATTGCCGCTTGCTGATTGGGTGAAAAGGCCCGGGCCGTTTggttgtttctgtttcttttaaaaagagCGGTTTTCTGTCTCGTCTCACTGTCTTTGTCATTCCCTCAgaacgtttctttttttttttttgtgaacccAAACATAAACCTGTGTTTAACAGATTTTGACGTTGTCATGAGAGCCATTTTGGTCACAGTGTGTTTTCATTCAACCTTTGTGTCTTAGCTGTAGTTTAAGTGTCCCGTTCTAAATGTGATGTTTGTCATTAGGGCCTCAGGCTAGCTGtggatttattttgttaaaaatgtctttcCTAAACCGTCTAAATCATATGTTCTGCAATAGTCACTCAAAGAAAAGTCATTTCTAAtgtatcatttatttttcagtcCATGAGGTAATGGTATGCGCTAATTTTCCTCTCCACATATATGACTGAATAATTTTGTAGTGCACTGTTTTCCACCTTTAAAAACTGCCAGACTTTGGAGGGTGATGTTGTTGCTTGCAGCATGATGCCAGATTCAGACCTTTCTTCTTCGCTTTAGTGTAGTCCAGGTTTCTCCTTCGTCTTCGCTGTTTCTATCTCATGCACGGAAAGCGTTACTGTAAATTAAATTCCAAAACTCCTCGCTCAACAACAAGTGCCTTTCCTCCTGACTACCAAAACAATGTGCTGTGTTGCCTTTTTgtggataataaaaaaaaaaaaacacaaacacaatttcAAAAAGGTGCTCTGTAACTAACTCTGTAGTGGCACATTATAAGGTGTATCTTGGGAATGTGTAAGTTGCAagttttcaacaacaacaaaaagctcAGCACTACCACTGGTGCTGTTCAAAACATCCATCTtgtatatgttaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96071 lncRNA upstream 29047 11537184 ~ 11570067 (+) True mbpb
TU96053 lncRNA upstream 115471 11483406 ~ 11483643 (+) True G71882
TU96042 lncRNA upstream 117025 11481645 ~ 11482089 (+) False depdc1b
TU96041 lncRNA upstream 162415 11436471 ~ 11436699 (+) True G71873
XR_005639740.1 lncRNA upstream 289262 11236294 ~ 11309852 (+) True LOC120562313
TU96106 lncRNA downstream 90498 11706557 ~ 11772009 (+) True G71921
TU96118 lncRNA downstream 205581 11821640 ~ 11821934 (+) True G71929
TU96144 lncRNA downstream 595951 12212010 ~ 12215147 (+) True G71952
TU96145 lncRNA downstream 600204 12216263 ~ 12216560 (+) True G71953
TU96151 lncRNA downstream 657335 12273394 ~ 12275941 (+) True G71959
XM_039804687.1 mRNA upstream 116691 11467345 ~ 11482423 (+) True depdc1b
XM_039805263.1 mRNA upstream 582532 11010980 ~ 11016582 (+) True LOC120561921
XM_039806342.1 mRNA upstream 596644 10973385 ~ 11002470 (+) False macf1b
XM_039805264.1 mRNA downstream 92322 11708381 ~ 11710258 (+) True LOC120561922
XM_039806390.1 mRNA downstream 105057 11721116 ~ 11768925 (+) False LOC120562594
XM_039806389.1 mRNA downstream 108203 11724262 ~ 11768925 (+) False LOC120562594
XM_039806392.1 mRNA downstream 108203 11724262 ~ 11768269 (+) False LOC120562594
XM_039806391.1 mRNA downstream 118205 11734264 ~ 11768925 (+) True LOC120562594
TU95885 other upstream 731282 10785654 ~ 10867832 (+) False LOC120562569
TU95894 other upstream 777614 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 777697 10820295 ~ 10821417 (+) True G71743
TU95730 other upstream 1390917 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 2749394 8849632 ~ 8849720 (+) True trnay-gua_42
TU96107 other downstream 92394 11708453 ~ 11709509 (+) False LOC120561922
TU96328 other downstream 1144758 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 1508875 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1852168 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 2517552 14133611 ~ 14144296 (+) False cmc1

Expression Profile