RNA id: XM_039805443.1


Basic Information

Item Value
RNA id XM_039805443.1
length 2700
RNA type mRNA
GC content 0.44
exon number 5
gene id has1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18314669 ~ 18318666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTATAAAGCCAACAAACTTTACGCCAAGTTGCGGCACAAGAGAAACACCAAGTGGATGTCTCGCAAATTTAAAGCAGGGGAACTTGACATCAGGTGAAGAAACACAATGGAGCTGAAACCTTTATTGAAGAAGCTGGGCACAACAGTTCGTGCCATCCTCACTTTCACCTTTGCTCTGCTGGTCCTGGGCGTGATGGTGTGGGCCTATGTTGACGGTTTCCAGCTGGCCACCTCCATGTATGGAATCATCTCCTTTGGCTTTTATGGACTACTCCTCTCACTCCACGTGTTGGTCCAGAGTTTATTTGCCTTTATTGAGCACCGGCGAATGAGAGCTCGCACAGACCCCTGCACATTAACCAAAACCATCGGCTTCACTATATCAGCGTTCCAGGAGGACCCTGTGTATCTCAGAGAGTGCCTGAACTCCATCAGGGCCCTCAAGTATCCCCCTGAGCTGCTGCGCATCATCATGGTGATAGACGGGAACAAAGATGATGACCGGTATATGATGGACATGTTCAGGGAGGTGTTTGCGGACCAAGACCCTGGCTGTTATGTGTGGAAGAACAACTATCATACATGGGACCCCATTCAGGCCCAGCAGGATGTGGAAATGGCAACAGAAATGGGCCCAGGAGGGGATGCTGATCATATTGTAGGTGAGGATCTACAGCGAAAGGAGGTAGAGCGCCTGATCCAGAGCAAGAGGTGCGTGTGCATCATGCAGAAGTGGGGCGGCAAGCGGGAGGTGATGTACACAGCCTTTAAAGCACTCGGGCCATCAGTTGACTATATACAaGTGTGTGACTCGGACACCAAGCTGGACCCTCTGGCAACCATGGAGCTGTGTAAAGTGTTGGAGAGTAACCACAAGTATGGAGCTGTGGGAGGAGATGTGATGATCCTCAACCTGAAAGACTCTTACATCAGCTTCATGAGCAGTCTGAGGTACTGGATGGCTTTCAACATTGAAAGGTCCTGCCAGTCCTTCTTCAACTGTGTGTCCTGCATAAGTGGCCCTTTGGGTCTGTACAGGAATGATCTCCTCCAGCAGTTTCTGGAGTCCTGGTACAATCAGATGTTTTTGGGAAGTCACTGTACGTTTGGTGACGACAGACATCTTACCAACCGAATGCTGAGCATGGGCTATGCTACAAAATACACAGCCCGCTCCAAATGCTATACAGAGACACCTGCTCAGTTTCTGCGCTGGCTTAACCAGCAGACCCGCTGGACAAAATCTTACTTCCGCGAGTGGCTCTACAATGCAATGTGGTGGCACAAGCACCACCTCTGGATGACCTACGAGTCCATCGTCTCAGGTATTTTCCCCTTCTTTGTCACCGCCACCATCATCCAGCTGTTTTGGACAGGCACGCTGTGGGACATCCTTTGGATCCTGTGCTGCATCCAGCTGATCGGGCTGGTGAAAGCGGCATACGCCTGCATCCTGCGAAGAGACATGGTGATGGTGTTTATGTCCCTCTACTCTGCTCTGTACATGACCAGCCTGCTGCCTGCTAAGTACTTTGCCATTCTCACCATGAACAAAAGCAGTTGGGGGACATCAGGCAGGCGTAAGATTGTAGGGAATTACAtgcccctcctccctctgtcaGTGTGGGCAGCCATTTTATTAGGTGGGCTTGGTTACACAATCTACAAGGAGAGTCAACAGGATTGGTCTACACCAGCCAAGATACTGGAAACAAAGTTTATTGTCTTTGGCTGTGTGGCCTACACGTGCTACTGGCTGCTTATGATGTTCCTCTATTGGATATGGTTCCGCCAGTTATGTAGGAAACGCAGCCAAAGTTACACATTGAGTGTGTAGGCCCAAAGTGTCCAGTAAAGGAAGATAATTTATTTGAATTCAACAATTTACCTTATTTTATTCAGTgggtttcatttatttattttatctcaCATTTCAGTAACTGATGGACAGGGGCTTTCATGCAGCTGctaaaccaacaaacaaaatattgttaaaattGATGATATGGATCCATATTACCTGAGCATTTTTGAAAAACTAAATTTATAATGACAAATGTcactataaaagaaaaagactataaaaacaaatgtttaattCATATGGAGATGCTGTTgcacatttaaatgaaactaTACTGATGGCTTTTGGGCCAATGCACTTCTCAGGTTTATCTTTGTCAGATTATGATGGGAGAGATGGCCTTCCAtcagatatttatttattatatctaAAGATTGGAAATCTGCtatttagataattttttttgtattcaaaAGGTGGGTAATGGATCTTGGGGTATGTGTCTTTTAAAAATATTCAGATGATATGTCCACATATGTGTATATAGATTACTTTAACAACACAATGAACTTCACTTGTATGACTGTGTCAGTTTAGTGACCACTACTTCACCACTGTTGTTAATATATGCACTGGATCCTGGATGGCACTTTCTGCAGCGTTGCAGACTTACTTGAAAATATAGAAAACTGTTATAAACAGTTATAGTTTTGCAAAGTGGGAAAAATGCCGAGAAAAATAAACTGTACCTCTAAAACTGGACTGATAATGATGCTGTGTCTGAGGATCAAAACATGGAGTCACTTACTGAAACCTGAAACAATGGGGACTGATGTTTCTTTAAATATTGTATACCTATATTGTATACCTATTTTCTTGATAGGGTGTACTGT

Function

GO:

id name namespace
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0050501 hyaluronan synthase activity molecular_function

KEGG:

id description
K00752 hasA; hyaluronan synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97894 lncRNA upstream 103246 18202757 ~ 18211423 (+) True G73254
TU97863 lncRNA upstream 184351 18130052 ~ 18130318 (+) True G73233
TU97862 lncRNA upstream 185450 18129019 ~ 18129219 (+) True G73232
TU97861 lncRNA upstream 186782 18127423 ~ 18127887 (+) True G73231
TU97860 lncRNA upstream 187351 18125080 ~ 18127318 (+) False G73230
TU97952 lncRNA downstream 12001 18330667 ~ 18330913 (+) True G73307
TU97956 lncRNA downstream 72673 18391339 ~ 18395195 (+) True G73311
TU97975 lncRNA downstream 105323 18423989 ~ 18424403 (+) True G73326
TU97979 lncRNA downstream 122321 18440987 ~ 18448429 (+) True G73330
TU97980 lncRNA downstream 136908 18455574 ~ 18461325 (+) True LOC120562807
XM_039806696.1 mRNA upstream 3171 18310072 ~ 18311498 (+) True LOC120562798
XM_039806700.1 mRNA upstream 142426 18170829 ~ 18172243 (+) True LOC120562800
XM_039806002.1 mRNA upstream 208920 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 208920 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039804754.1 mRNA upstream 559614 17750930 ~ 17755055 (+) True paqr7b
XM_039806719.1 mRNA downstream 68679 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 76741 18395407 ~ 18397717 (+) True si:dkey-79d12.5
XM_039805448.1 mRNA downstream 80395 18399061 ~ 18420721 (+) False kcnn4
XM_039805447.1 mRNA downstream 80396 18399062 ~ 18420721 (+) False kcnn4
XM_039805449.1 mRNA downstream 80974 18399640 ~ 18420721 (+) False kcnn4
TU97779 other upstream 535539 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 667483 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 854342 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 862101 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 945894 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 80390 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 80390 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 96432 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 313736 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 313740 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile