RNA id: XM_039805455.1


Basic Information

Item Value
RNA id XM_039805455.1
length 1981
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120562035
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18749085 ~ 18773822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAAATGACAGCGGCTCCTGACAAGTCTGAAAATATTTGTCACTTTATTTGCAGGTCTGACCCCGAGAGGACGACATGGACTTTCTCAAGTGGCCTCTGTTTTTTGTGTGCCTTTGCTCTAAGGGTTCTGAAACTGAAGGCTCATCTTGGACAATTAAGGTGCCGTCCTCAGTAAAAGGTCTCCCTGGATCCTGTGTGGTGATCCCCTGCTCGTTCAACTACCCAGATCCAGGCAGGGTGGTCACTGAATTCACTGGGATGTGGGCCGAGGGGGAACATGAGCTCATCTATCACCCAGACAAGTTAACAGTGAAGCAGCAGTATCGGAGTCGGACAGAGCTGCTGGGAGACATCAGTCTGAAGAACTGTTCATTTAAGATTGATCCCCTTCGACAAAGTGACCAAGGGCCGTTTTATTTCAGGATCGAAATGGCAGGCTATGAAAAGTTTTCTTACAAAGAGAACAGAGTCTCCATTACAATGAGTGTACCAAATCCCATCCAGTTCTCTGTGAAAGAGGAGGTAGTGGAAGGTGATAAGGTGTCTGCATCCTGCTCAGTGTCTCACTCCTGCCCCACCTCTCCTCCTGTCTTCACCTGGAGTCAcaaaggacacacacatgtCCAACCACAGCAGCTTGACGATGGCCAGTGGAGAGCGACATCTACCATAAACTTTCAAGCTACCAGCGCTGATCACAACAAGCCTTTAAAGTGTACTGTAACATACCATGGAGGGCAGCACCAAACAACATCCAGAGACCTCAAAGTAAAATATGCCCCAGTAAATGTGACGGTTGAGCACAAGTCAGATGTAAAGGAGGGAGAAGCTGTGCGGCTGAGATGCTCCAGTGATGCTAACCCCCCTGCCAGCAGCTATCAGTGGCATAATGAAACTGGTGCTCAGCTGCATCAAGGAAACGTCTACATGCTGCCAAATGTCTCCAGACACACAGGAGCTCTGTACTGTACTGCCATCAATGCAGTAGGACAAGGCAATTCAACCCCTGTGCAGCTTAATGTGTTATATGCCCCTGAGATTAAGACGGCTTCTTCCTGCTCCTCAGAGGCAGATATggtaaagtgtgtgtgcattgcGGAGTCCAAGCCTCCCAGCATGGTCTATTTTGTGCTTTCTGACAGAGTCCTGCCAAGCACCAAGGTAGAGAAACATGGCTTTGTTACCATTGGAACTCTGCGGGCAAAGTTTGGATCTTCTGAGGCTGTCTACTGTCTGGCAAACAACACCCTGGGTAATGCCAACCTCACACTCCCTTTACCTAACAGTAAGATGCAGAATCTTTATATTATCATCGCTTCTGGAGCAGGAGGGATTTTGGTGATGCTTTTAATAACAGTGATAGTTGTTAAAAAACGCAGGGGGAGGTCTAAGGATGCACCAACACCTCGCATGAACTCACTGAAAACAGATAAAGATGTGGTGCTCCCTCAGTATGCTCCAACAAAAAGAATAGAAAGGTGCTATGATGAGGTACAGTGCTCTGGCATTTACGTCGATGATCATGTGTATGGCAACATGGAGACTGACTGCGATGAAACAATATATGCCAACATGTAACATTGTTGAACTCATTTGAGGAACCGCTCCATCTGATGTGGGTCAAGAAAGTTGTACAAAAAATATGCTTTCTTCTGTATATAAGTGCTGTTTTTCCCCTGTAATTCCCacatatttttgaaaataattccCTGACTGCTTGTCCGATCAACAGTAACAAATGTGAATGATGAAAAATCACCATTAAACTGCTGTCATTTTTTAGTTACATATATGTTTGATAACTTTTAATTTTCCATCAAATCAATGTATCAGTCACCTAAGACAATACATCTTGCACAAGTCACACCTTTTGAATGTCCTCTTCAGCTGTATCTGTAtttgaatgtactgtataaacACATGCATTTTCACAGattgtattcatttattaatcaaataaaacaaactgatAAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98059 lncRNA upstream 17537 18750345 ~ 18750799 (+) True G73377
XR_005639852.1 lncRNA upstream 22932 18744669 ~ 18745404 (+) False LOC120562824
TU98032 lncRNA upstream 75366 18687042 ~ 18692970 (+) True G73361
TU97987 lncRNA upstream 203254 18501151 ~ 18565082 (+) True G73338
XR_005639851.1 lncRNA upstream 272992 18490124 ~ 18495344 (+) True LOC120562823
TU98218 lncRNA downstream 39487 18813309 ~ 18815597 (+) True G73484
TU98220 lncRNA downstream 52760 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA downstream 52760 18826582 ~ 18828688 (+) False proser3
TU98224 lncRNA downstream 52760 18826582 ~ 18828688 (+) False proser3
TU98215 lncRNA downstream 86506 18860328 ~ 18861838 (+) False kmt2bb
XM_039806699.1 mRNA upstream 24536 18725052 ~ 18743800 (+) True LOC120562799
XM_039806698.1 mRNA upstream 24536 18737117 ~ 18743800 (+) False LOC120562799
XM_039805482.1 mRNA upstream 31751 18731402 ~ 18736585 (+) True LOC120562045
XM_039805283.1 mRNA upstream 55368 18700302 ~ 18712968 (+) True LOC120561938
XM_039806723.1 mRNA upstream 112605 18652386 ~ 18655731 (+) True LOC120562819
XM_039805458.1 mRNA downstream 16803 18790625 ~ 18799451 (+) True si:dkey-238d18.4
XM_039805438.1 mRNA downstream 26533 18800355 ~ 18805299 (+) True hsc70
XM_039806695.1 mRNA downstream 32180 18806002 ~ 18808414 (+) True LOC120562797
XM_039805462.1 mRNA downstream 35534 18809356 ~ 18812372 (+) False LOC120562037
XM_039805460.1 mRNA downstream 35534 18809356 ~ 18812372 (+) False LOC120562037
TU98057 other upstream 21661 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 114699 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 131029 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 374791 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 374791 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 873153 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2234211 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2629305 21403127 ~ 21404603 (+) False crot

Expression Profile