RNA id: XM_039805463.1


Basic Information

Item Value
RNA id XM_039805463.1
length 1997
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120562037
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18809356 ~ 18812372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTCGGCTACAGCTAAGATAACGTCACTTCAACAGAAGATACACCAGCCGGGGGGGATGGGGTTCTCAGAAAAGTGCGGATGGCTTCCCTGGTAATCTACTGTGTGATCGTCATTGTGGGGACTCTGGGCAACGGTCTGGTTATCTACGTGACAGGCTGCAGGATGAAGAGAACAGTCAACTCAGTTTGGTTTCTCAACTTGGCCCTGGCTGACTTCCTCTTTACGGCCTTCCTGATTTTCACGATCATTTCCAGCTCTCAGGATCATCAATGGCAATTTGGAGAATTCATGTGCAAGTTCAACAGCTTTGTGATTATAGTCAACATGTTTGCCAGTGTCTTTCTTCTGACAGCCATAAGTCTGGATCGTTGCCTGTCAATCTGGGTGGTGGTGTGGGCACAAAACAAGCGCACCGTTCGCAAAGCCCAGCTCATATGCGTTTGCATCTGGATGACTGCTATGGTCTGCAGCACCCCTTATGCCATTTTTCGCAGGCTGGTTGGAGAGGATAAGACTTATTGTACTTATTCCATAACACATGAACAAAAATGGATTCTTGGCATTTTTCGCTTTGTTGTGGGCTTCCTCATCCCATTCCTGGTAATAATTGTCTGTTATGCCGCCATAGCTGTTCGTGCAGGGCGCCTGCATAGGACCAGGAAACAGAGATCTCGCCGAATAATTTTTTCTATTGTTCTTGCATTCTTCATCTGCTGGTTGCCCTACcatattatacattttatagAGTTAAAGGCCTCTAATAACTCAGATTATGGGAATATTGTCTTGATTGTAGGTCCACTGGCTTTGAGTCTGGCTTTTATGAACAGTTGCCTGAACCCCATTCTTTATGTTTTCTTGTGTGATGAATTCCAGAAGAAGCTCAGGCAGTCCATATGCTTTGTCCTGGAGAGTGCCCTGGCAGAGGACCACTTGTCCTTTATGTCCTCTCGTTCCTTGTCATCACACTTGTCTCGGTTTTCTCGGAAGTCAGACTCTGCTGCACCTTTGGAGAGGAAAGACACAGCAACTTCCTTAAACTTCACAGAAAGCAAAGTGGTCATGACTGACGAGAGAGACTGTGAGCACTGAATAAAGGCCTCCACAGACACTTCCTGAAACTTCACAGAAAGCAAAGTGGTTATCACtgatgagagacagagacattgAGCACTGATTAAGACCTCAGGCGTTGTAACTTCAATGAgtccagatgttttttttaaagcaaacttGTAATCAATAGTgacaaaagaaaagcacaaactGAAAATGACATGTTAAATTGATTCGGTCAGTACTTCtgtgcacagaaaaaaaaattgttgaatATTTGctatgattgattgattgattgattgattgatattttTATTCACGTGTCATGCCACTACATGGCACATCCCACACAGAATAACATGACACCAATACAACAGTAATTCATTCCACAGCTTCCAGTCCAATGTCCACACACAACATTCTCCActttacacaaaaaaaagaacaaataaaacataGCACAATGCTATGAGtgattttttaatgttttttatattaatgcacCTTTTCACGATCAGATGTTTTCACTTATGGCTGGTAAGACATCCCCACTGACTCCCCTGCTACTGCGTGCACCTGTTACATCTTCCATCTTTTTCTTACAAGTACATGTAGATTGATATTGCATAGCTCCCTATACGTTCCAGGTCTAATCAGCCGGAATaattgaaaacacctgtgtgggtgttgtggTTCTTTGTGTAACAATGAATTATTTTGTACCATGTAAACTTCAAGACATCAGATATGGAATTGCCTATACCTAATATGATAAAGGAACcaattttatgtttgtctgtaaGCTTTTAATGCTCATTTACCCATGGTTATTGACAGGCTATTTGTCCATAGCAGCATCCATGATATGTCACACAAGACTGAGCTTTAATGATTGAGCGTTTCAATAAGGTGAATAAAAACATATACGTATTTAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98059 lncRNA upstream 59134 18750345 ~ 18750799 (+) True G73377
XR_005639852.1 lncRNA upstream 64529 18744669 ~ 18745404 (+) False LOC120562824
TU98032 lncRNA upstream 116963 18687042 ~ 18692970 (+) True G73361
TU97987 lncRNA upstream 244851 18501151 ~ 18565082 (+) True G73338
XR_005639851.1 lncRNA upstream 314589 18490124 ~ 18495344 (+) True LOC120562823
TU98218 lncRNA downstream 937 18813309 ~ 18815597 (+) True G73484
TU98220 lncRNA downstream 14210 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA downstream 14210 18826582 ~ 18828688 (+) False proser3
TU98224 lncRNA downstream 14210 18826582 ~ 18828688 (+) False proser3
TU98215 lncRNA downstream 47956 18860328 ~ 18861838 (+) False kmt2bb
XM_039806695.1 mRNA upstream 1519 18806002 ~ 18808414 (+) True LOC120562797
XM_039805438.1 mRNA upstream 4634 18800355 ~ 18805299 (+) True hsc70
XM_039805458.1 mRNA upstream 10482 18790625 ~ 18799451 (+) True si:dkey-238d18.4
XM_039805457.1 mRNA upstream 36111 18764760 ~ 18773822 (+) False LOC120562035
XM_039805436.1 mRNA downstream 6829 18819201 ~ 18826624 (+) True proser3
XM_039805437.1 mRNA downstream 6829 18819201 ~ 18826624 (+) False proser3
XM_039805421.1 mRNA downstream 20873 18833245 ~ 18861958 (+) True kmt2bb
XM_039805423.1 mRNA downstream 20873 18833245 ~ 18861958 (+) False kmt2bb
XM_039805431.1 mRNA downstream 121858 18934230 ~ 18956037 (+) True zmp:0000001114
TU98057 other upstream 63258 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 156296 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 172626 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 336241 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 336241 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 834603 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2195661 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2590755 21403127 ~ 21404603 (+) False crot

Expression Profile