RNA id: XM_039805496.1


Basic Information

Item Value
RNA id XM_039805496.1
length 1673
RNA type mRNA
GC content 0.48
exon number 7
gene id gpatch3
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17509056 ~ 17512860 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGTTTTCtgtccaggaaaaaaaaaaaacaatcatggCGGACGCTGAAGCCGTAGCTCCGGTGTATTTGGCAATTAGTAACATTCCTGTTGCCTTTCACTCCGCTGACCTGAGAAATTATTTCAGTCAGTTCATAGAAAGTGGCGGGTTTCAGTGTTTTCACTACCGACATCGACCGGAGGTTCTTAGGGAGTCCGAAGTGTCCGAAAACACCGTGTGTGGTGACGGTGAGGAGGGTAGCTCCAAATCTTCGGAGACTGACCAAGGGACAGAAAACAGCTCCGCGAAGAAGCAGCAAGCGCTGAAGTCCTGCTGTTGTATCGCCTCACTTCATGCTAAAGATGCCGACAGATTCGTCAGGATGTATGCGGGGAATCACTGGATTGACTCGAAGGGGAACTGGCTGTCTAGACGTTGTGTTATTAAAAGAGTAAAGGTTTCACAGGACAAAGaTGATGGGTCATTCCCCTATAAATCAAAGTACGAGCAGCGGCACCGGGTGTCCTTAACAGAATGTTTCACAGAGGCTGACCTCAAAAGTTTATCCGAGCTGAATCCACCAGCTCTGATGCAGAATGGGAATGTGGGCACACCGGTGAAAGTGTTCCTACAGCTCATCCAATCCTGCCGACTGCCTCCGCGCCTCATCCGGAAGTTAGGCCTCACTTTCCCCAAGACCAGCTCGAATCGCCGTTACGGCAATGTACCTTTCCAGTATAAGGACAGTTGGACACTTCCAGCCACAGAAGAGACTATATTAACAGCTGCTGGACATGAAATATCAGGACCGGGAACTTTGACTGCTCCACTTTGGCGGCTAGCTGATCACACAGAAACAACAGAGACTGATGAGCCacagaaagaagaggaggaggatgcaCAGTCAAATGCAGATGATGATGATGACTACTGTGAGGAGTGGGAGCGCCATGAGGCTTTGCATGATGATGTAACGAGCCAGGAGCGAAGCAAAGAGAGGCTGTTCGAAGAGGAGATTGAGTTGAAGTGGGAGAAGGGCGGCTCAGGCCTGGTGTTCTACACTGACGCCCAGTACTGGCACAAGGAAGAAGGAGattttgatGAACAAACGGCAGACGACTGGGATGTTGACATGAGCGTTTACTACGATAAAGATGGAGGTGACATGGATGCCCGTGACTATGTCCGAATGCGATATGAAAAAAGGCTGAGGGTGGGTCTTGAAGATAGATCTGGACACAGTCAGTCTATTGGCAGCTTTGAGAGGTTCACAAAGggTTTTGGTCGTCGTTTGATGGAAAAGCAGGGCTGGAAGGATGGTGAAGGGTTAGGACACAGTCAGATTGGGATTCCTGACGCCCTTGAGAGTGAGGGCCAACATCCCAATTGTAAAAGAGGCTTTGGGTATCATGGAGATAAATTGCTCTTACATCCTGTAAAAAAGGCCAGGACAGATTTTCATATAACTACGGTGTATGATAAACCCAAAGACATCGATGGAGGGGACACCTTGCTGAGACGTCAACCAAACACTAGTATGAAGTACAGAGGCTGGCAGCCAGGTGGCAGCATTGGACCACGACGATGACTTCAAATTAAATGTTTCTTATTCATAGATTTTTTGTTACTCACATATTTGTCTCACTGtgttattaaaacatttcaaattgcTGACTCACTATCCCAAAAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639682.1 lncRNA upstream 4135 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 46029 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 105429 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 443145 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 517067 16991716 ~ 16991989 (+) True G72879
TU97801 lncRNA downstream 411090 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 601855 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 612134 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 612134 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 612220 18125080 ~ 18126954 (+) False G73230
XM_039805493.1 mRNA upstream 11323 17492444 ~ 17497733 (+) True kdf1a
XM_039805494.1 mRNA upstream 11323 17492444 ~ 17497733 (+) False kdf1a
XM_039805491.1 mRNA upstream 17115 17490075 ~ 17491941 (+) False LOC120562050
XM_039805489.1 mRNA upstream 17509 17489596 ~ 17491547 (+) True LOC120562050
XM_039805492.1 mRNA upstream 19582 17486166 ~ 17489474 (+) True LOC120562051
XM_039805497.1 mRNA downstream 167 17513027 ~ 17517296 (+) True gpn2
XM_039805498.1 mRNA downstream 7144 17520004 ~ 17535611 (+) True arid1aa
XM_039805499.1 mRNA downstream 7144 17520004 ~ 17535611 (+) False arid1aa
XM_039805500.1 mRNA downstream 7144 17520004 ~ 17535611 (+) False arid1aa
XM_039805503.1 mRNA downstream 7144 17520004 ~ 17535611 (+) False arid1aa
XR_005639656.1 other upstream 48729 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 56488 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 140281 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1436855 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1953104 15553464 ~ 15555952 (+) False irx4a
TU97725 other downstream 132653 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 238096 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 886196 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 886196 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 902238 18415098 ~ 18420327 (+) False kcnn4

Expression Profile