RNA id: XM_039805501.1


Basic Information

Item Value
RNA id XM_039805501.1
length 6903
RNA type mRNA
GC content 0.57
exon number 20
gene id arid1aa
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17520004 ~ 17535611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCCGCTCAGGTCGCCAGCGCCGCCACTCTTAACACTAGCCCGCCTTCCGAACTCAAAAAACCGGATCGAGACAACAAGGAGGAGTCGGTACCGGGGGAGAAGCAGTCCGACAAAAAGCAGCCGGGCTTGGACAGCGGATCGCCGGGCCGGGGAGATCTGCAGGACGGGGCCGACGGTGGAAATgcagggggaggaggggaaCCTGAGATGAAGAACGGGAATGGGAACCCGCCCAGGGCTAACAATAATAACCAGAATGACTCTGTCGGACCGGAGGGAAATAACCATCCCGGGTTGGTGCATCACCACGGCACGGCGTTTCCTCCACCTTCGTACGGATATAGTCAGCACTACGGTCGGGCCCCTTTTCATCAACATGGCGGACAACAAAGCCCTGGCATGGCAGCTGCTGCGGGTCCGGTCGTGCAGTCGAGCAACATGATGGACCCGTATCAACCTAATTCACACGAGCATGGCTTTTCAAACCACCAGTTTAACAATTACAACCCATTCCCGAACAGGACTCCATATCCCGGCCAGGCATACGCCATGAACTCCCCTCGCAGTACCCAGGCGCCGACAGCTGGGGGGCAGCCAGCTAACGTTAAGCAGCAGCCACCAGCGGGAGGACCCACGGCGATGGCTGGATCTTACAGTAACCAGAGATATAATATTGGAAACCCACAACCTACATCCACACCGACACTCAACAAGCTCCTAACCTCCCCCAGCGCAACGCGGGGTTATCCAAACTACCCGTCTAACGACTACAGTAGCCAAGAAGGAGCTAATAAGGGACCAGCAGACATGGGCAGTAGCGGTCTGTATGGAGGGAGCAATCCGGGTTGGCAACAAAGAAGCCATCACCCGTCGCCTATGAGCCCGGGAAGTGCCGGGCAGCCGCTAGTTAGGAACCAGCCACCTGGTCCTATTGACCCAATGGCAAAAATGAGAGGTCAGCCATACGGAGCAGGCAGTCCATATAATCAGCAGGCGCCGCAGGGGCCTCCCACAGGTCCACAACAGGGGCCCGGTTACCCTGGCCAGGGTTATGGCCCTCCAGGTCCTCAGCGATTCCCAGTGGGAATGCAAGGACGTACCCCTGGAAGCATGGGTAGCATGTCGTATGGTCCACAGATGGGATCTTATGGACAGCAGGGACCAGGAGGCTATGGCTCTCAGGGCCAGGCACCATATTACAGCCAACCTGGCCAGGCTCCTCACCCAAGCCAGCAGCAAACCCCCTACTCCCAGCCCCCATCAGTGCAACCGGGTGGCCAGACACCTTACCCAGGGCAAACCCACCCTCCACCGACGTCTGCTCCACACAACCAGGGAGCACAACCCTATCCGCAGCCCCACATGCCCCCACAGTCCCAGGGGCAACTGCCAGGCCCATCCCAAGGGCCTCCACAGTCTCAGCCCCCTTATTCCCAAACCTCAGCCCCACAATCTGGCCAGTCTCTCTACGCCCAGCAGCAGGGTCCTCCCAATCAGGCCCCACAGCCGCCAAGTTCCCAGGAACCCGCTGGACCACAGGGCCAGTCCAACTACCCAGGAGCCACACAGGGGCCTCAGCAGCCCCCCTCGCAGCAACAGCAGGCACAGTCTCAGCCTCCACAGCAGCCACCGGGACACAGCCAACACCCACAGGGCCAGCCTGCAGCGTACCCGCAGAACCCCCAGCAGCCGCCGCAGCAGCAAGCACAACAGTCACCTTATCAGCGCTTTCCTCCTCCACAACAGCAGGAGGTATCCCAGGACTCATTTCAGTCGAGCGCCCCTCCATCCACCCAGCCTAAAACTGGCCCAGAGGACAGTCAAGGCCGCCCCTCCAGCCTTCCGGACCTGTCAGGGTCCATTGATGACCTGCCTACAGGTGCAGAGGGTGCCCTGAGTCCCGGTGTGAGCACGTCAGGTGTGTCGAGCAGCCAGGGTGAGCAGAGTAACCAGGCCCAGTCGCCCTTCTCTCCTCACACGTCTCCCCACCTGCCAGGCATCCGAGGGCCTTCACCTTCGCCAGCTGGCTCCCCTGCCAGCGCTAGCACACCCCGCACAGGACCGCTGTCACCCGCCAACATGCCAGTGACCCAGATGCCTCCCAGGCCATCAAGTGTGCAGTCAGATGGAAGTCTACACCCTGCAATGAGCCAGTCTCCTATGGCCCAGGACAGAGGGTTTATGCAGAGAAACCCTCAGATGCCTTATGGCTCCCCCCAGTCAGCCTCTGCACTGTCGCCACGCCAGTCTTCAGGGGGACAGATGCATCCTGGGATGGGCCCATATCAGCAGAACAACTCCATGGGTGGCTATGGACAGCAGGGAGGACAATATGGCCCCCAAGGTTATCCCCGTCAACCGGGCTACGGCAACATGCCCAACGCAAACTACACTGGGCCAGGCATAGGTCCAATGAACTCCATGGCAGGACAGGGTGCGGGGCCGCCATATTCTGGCATGCCCCCAGGAAGGATGCCTCCTAATCAAATGGGGGCACGTCCCTACGGCCCCAATATGGGTCCAAATATGGGGCCCAACATGGGTCCAAACATCCCTCCTAACATGGGCAACATGCCACCCCAGGTAGGCTCAGGAATGTGTCCTCCTCCAGGCATGAACAGAAAGCCCCAGGACCCCGCAGCCATGCAGCACCCTGCCACCAACTCCATGCACAACAGGATGCCTGGTTACCCCAACATGTCTCCAGCCATGATAGGCTCCGGCCCACCCTATGGCCCTCCCATGAACAACATGCCTGGAATGATGAACACTCAAGGTGGATCACCTTATCCTATGGGGCCAAACATGGCCAATAACTCAAGTGGTATGGCCCCCAGTCCAGAGGTGAACAATAAGATGAATAACAAAGTAGATGGGAGTGGAACGCCCAAGCCAGAGCCCAAATCTAAGAAGTCCAACTCTTCCACCACAACCAATGAAAAGATAACCCGTCTGTATGAGTTAGGACCAGAGCCGGAAAGGAAGATGTGGGTGGACCGTTATTTGGCCTTCATTGAAGAGAAAGCCATGGGCATGACCAACCTGCCCGCTGTAGGACGCAAACCGCTCGACCTCTTCCGTCTGTATATGTCAGTCAAAGAGATCGGAAGCATGGCACAGGTGAGTAAGAATAAGAAATGGCGTGATCTGGCCACTTCCCTGAATGTGGGCACATCCAGCAGTGCTGCCAGTTCTTTGAAGAAACAGTACATCCAGTGTCTGTACGCCTTTGAGTGCAAAATTGAGCGTGGTGAGGACCCTCCTCCTGAGATTTTTACAGACAACAAAAAGAACCAAGCTGCTAAGGTCCAGCCACCCTCTCCAGCGTCCCTCTGCTCCACAGCTGGGTCAGGCTCTCTGCAGGGTCCTCAGACACCCCAGTCCACCAGCAGCTCCATGGCTGAAGGGGGGGACCTGAAACCTCCCACCCCAGCCTCCACTCCTCATACCCAGATGCCCCCCATGCCACCGGGGTCCAGGAGCAGCGTTAACCTGCAGGACCCCTTCTCTGAAGGAAGTGACCCTGCTTTCCCCAGGAAGAACATGACGCCCAACTCTGCCTATCAGGCTGGCATGAACACACCAGACATGCAAGGGCGCATGGGCACCTACGAACCCAACAAGGACCCCTTTGGTAACATGCGGAAAGTCGGGGAGCACTTTCTACCTGCTAACCAGGGCCCGAACAGCGGGGTGGGtgaccaacagcagcagcaaccgccgcagcagcaacagcagcagcctcCGTTTAACAGAGGACCGCCTGGGGCCATGGGCACAATGCCAATGGGGCCCAGACAGCAGTTTCCCTATGGACCAGGCTACGACAGGAGATCGGAGCAAGGAATGGGCCCAGAGGGCAACATGGGATCCGGTGTTCCTCAGCCAAACCCTATGATACCTGCCAATGCCGACACTGGGATGTATTCGCCAAACCGCTTCCCACCACAGCAGCCACGGCATGATTCCTATGGTAATCAGTATCCTGGACAAGGAACGCCCCCTACAGGCTCCTACCCCAATCAGCAGCCTGGAATGtacccacaacaacaacaacagAGTTACAAGCGTCCTGTGGAAGGGGGTTATCCTCCATCAAAACGCCATGAGACGGAGTACAGTGGGCCCTTCCATGGTggacaacaacaaccaccaccACCGCAGCAACAGCCCGGAGGTACCTCTGCACCCTCTTCAGGACAGCAGGAGTACAATCAGTACAGCGGCAGTGGACCCTACCCCGGCTCTGATCGCCGTCCACCTGGCCCAGGCAATCAGTTTCCCTTTCCTTTTGGTCGTGAACGTATGCCGGTAGCGACGGGGCCCAACTCTCAGCCCAACATGCCCCCTCAGATGATGCAGTCAGGCCCTGAGGGACCTCAGGGAGGTATGTGGCAGGGACCGCGAGACATGAACTATCAGAACTACCCCAACCGGCAGGGTGGCCCCGGGGGCCCACCCCAGGGACCCGGCTACCCTGGCATGAACCGCTCAGAggagatgatgtcatcagaACAGCGCATGAATCATGATGGACAGTGGGGGGGGCAGATGGGCCCGCGGCAGCCTCCTTATGGTCCAGCAGGGCCTGGCCAACCTATGCCTCGTTCAGTACAGCCCAACTACCAGCCCCTTCAGGGTGTGCAGAACCACATTCCACAGGTGTCCAGCCCGGCCTCCATGCCCCGCCCCATGGATAGCAGGACATCGCCTAGTAAATCTCCCTATATGCACGGAGTAATGAAGATGCAGAAGGCTGGCCCTCCAGTGCCTGCGTCTCACATAGTGCCCCCTCCGGTGCAGTCGCCTCTAATAAGGCGAGACATGCCTTTTCCCCCGGGCTCTATAGAAGCTTCACATCCTGTCCTGAAACCACGTCGGAGACTCACGGTGAAAGATATCGGAACCCCCGAGGCCTGGAGAGTTATGATGTCATTAAAGTCTGGTTTATTGGCTGAGAGTACGTGGGCCTTAGATACCATCAACATTCTCCTGTATGATGACAACAGTATTTCTACCTTTGATCTCAACACGTTGCCTGGCCTACTAGAGTTGGTGGTTGAGTATTTCAGACGCTGCCTCATTGAAATCTTTGGTATTCTTCGGGAGTATGAGGTGGGAGACCCTGGCCAGAGGACACTACTTGATCCTGATGCCTTGAAAGAAGCCTGGGACAGCGCAGAAGAAGAGGAACAACGGGCTGAGGACATGGAacaagaggaaggagaggacgAAGAAGAGGAGGAACGAGAAACTGAGGGGCCAGCTCGtgtgaaggaggaggagcagcagcagcagtgctcGGAGTCTCTGGGTCGAGAGGAGAAAACCGAAGATGAGGAGCGGAAGAACAAGGGTTCTTCATCTGAACAGACGGGCTCATTGCAGTCCTTAGCTGCCAATGAAAGACCCAAACAAGCCAGCAAGTTTGACAAGTTTCCTCTAAAGGTGGTACGGAAGAAGGATCCATTTGCGACTGGCAAGTCAAATAATCACGGCAAACTGCAAGAGTTTGACAGTGGGTTACTTCATTGGAGCGCTGGAGGCGGAGACTCAACAGACCACATCCAGACTCACTTTGAACCACGCAAAGACTTCTTGGAACCACGAGAACGAGTATATGTGCCCTCAAGTTTGCTGAAGCGACGAGTCCCAGAAGAAGTGTCACTGGAAAATTGTTTGCCAGCTGAGGAAGAGAAAAGCAAGAATcaagatgaagaagaaatgcCAAAGGAGACCGCTTTCTCAGAGAAGGCCAGCTCCTCACTCAgcattgaggaggagaggaaaatggATTCTGAGACAAAGACAGTTGAGAAAGTTGCTAAAAGTCACCAGGAGAATAATAGACCTATTCCTTTCCCCGGCAGTGTTTTAACCCAGCAGGCACAGCAGACTGGCACCATCCTGGAGGATGAGCCTCACAGTAAGGACGAGGGGCCGCTCGTTGCACTGGCTAACTGGCAGGATTCTTTAGCCCGCCGCTGCATTTGCGTCTCCAATATAATCCGCAGCCTCTCCTTTGTGCCAGGCAATGACCACGAGATGTCCAAACATCCAgggctactgctgctactgggACGCCTGATCCTGCTCCACCACAGGCACCCTGAGCGCAAACAAGCTCCGCTCACCTACGAGAAAGATGAGGACTCGGACGAGGGAATGGGCCAAAGGGATGAATGGTGGTGGGATTGCTTGGAGCTCCTGAGGGAGAACACACTGGTCACTTTGGCGAACATCTCAGGCCAACTGGACCTCTCTATTTACCCAGAGAGCATCTGCTTGCCTCTGTTGGACGGTCTTCTCCACTGGGCTGTCTGCCCATCAGCAGAGGCCCAGGACCCCTTCCCCACCCTCGGCCCCCACAGTGCTTTGTCACCTCAGAGACTGGTCCTGGAGACGCTAAGCAAGCTAAGCATTCAAGATAACAATGTGGACCTCATCTTGGCCACTCCGCCATTCAGTCGGTTGGAGAAGCTATATGGGAACCTTGTGCGGCTAATCGGAGACAGGAAGGTTGCGGTCTGCAGGGAGATGGCCGTGGTCCTACTGGCCAACCTGGCCCAGGGTGATACTGTGGCAGCCAGAGCAATCGCTGTTCAGAAAGGCAGTGTGGGCAACCTGCTGGGCTTCCTAGAGGATAGTCTGGCTGCCACACAGCTTCAGCAGAGCCAGAGCTCTCTACTACACCTACAGGGGATGCACTTCGAGCCCACAAGCCCGGACATGATGCGGCGAGCTGCCCGGGCTCTGCACGCCTTAGCCAAGGTGGAGGAGAACCACTCAGAGTTCACACTACAAGAGTCCCGACTCCTCGACCTTTCAGTGTCTCCCCTAATGAACTCGCTGGTTTCTCATGTTATCTGTGATGTACTCTTTTTGATTGGCCAGTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639682.1 lncRNA upstream 15390 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 57284 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 116684 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 454400 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 528322 16991716 ~ 16991989 (+) True G72879
TU97801 lncRNA downstream 389617 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 580382 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 590661 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 590661 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 590747 18125080 ~ 18126954 (+) False G73230
XM_039805497.1 mRNA upstream 3015 17513027 ~ 17517296 (+) True gpn2
XM_039805496.1 mRNA upstream 7451 17509056 ~ 17512860 (+) True gpatch3
XM_039805493.1 mRNA upstream 22578 17492444 ~ 17497733 (+) True kdf1a
XM_039805494.1 mRNA upstream 22578 17492444 ~ 17497733 (+) False kdf1a
XM_039805491.1 mRNA upstream 28370 17490075 ~ 17491941 (+) False LOC120562050
XM_039805504.1 mRNA downstream 2197 17536530 ~ 17539422 (+) True pigv
XM_039805505.1 mRNA downstream 6724 17541057 ~ 17550194 (+) True zdhhc18a
XM_039805506.1 mRNA downstream 6724 17541057 ~ 17548372 (+) False zdhhc18a
XM_039805507.1 mRNA downstream 28140 17562473 ~ 17567266 (+) True tent5ba
XM_039807047.1 mRNA downstream 49690 17584023 ~ 17593027 (+) True tcea3
XR_005639656.1 other upstream 59984 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 67743 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 151536 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1448110 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1964359 15553464 ~ 15555952 (+) False irx4a
TU97725 other downstream 111180 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 216623 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 864723 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 864723 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 880765 18415098 ~ 18420327 (+) False kcnn4

Expression Profile