RNA id: XM_039805518.1


Basic Information

Item Value
RNA id XM_039805518.1
length 1110
RNA type mRNA
GC content 0.42
exon number 5
gene id krtcap2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22110516 ~ 22113062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTTATATAAATTAATGTATGTAGAACTGAAACATGAGACACATGTATCATGACTTATGACCCTGCGGTTTATTCGGCAAAAAAATGTCAATCTAACCAGCACAAAGGTATTAGCATGACAACAAagtcctctcttcctcccattGACATATTCAAGACTCCGCCCACTGGTCCTACCTGTCATTTGGACCGGGTGGTAAGGTTTTTAGTTCCTAGAGCCTGGACATTAAGTTGCCAAGTTAAACCTAATTCCTCTCTGTTTCATTACGAGGACTCTAATATCGAATCATGGCAGCGGTGAACACGGGCACCTCTCTAGTGCTGTCCAGTCTGCTGTCAGTGCTGGTGTTTGCTGGGATGCAGATGTTCAGTAAGCAGCTGGGATCCACTGAGTGGCTTACCATCCTGGGAGGTTTCCTGGGCTCAGTCCTCTTCATCTGCTCCCTCACTGCATTTAATAATCTAGAAAATCTGATTTTCGGGAAGGGATTCCAAGCCAAGATATTCCCAGAGATTCTGCTGTGCCTGTGTCTGGCACTGTTTGCCTCTGGTCTGGTACACCGTGTCTGTGTCACCACATGCCTGATATTCTCCCTTTTCGCCCTGTACTACATCAACAAAGTATCTGCCGCTCTCTACCAAGCAGCTGTTCCCGCAGTAACACCAGCCAAGGCTGCCAGCAAAGGCAAAAGGAAGAACTGATGAATCTGTTGGATCCCACTTGTATCCAGTGAATCAGTTATTGCTACCCAGGTGCTGATGGCCAGTGCAACACAGCAGTTGcatattttgacatttgtgtctTGAATCCATAACCCCCTGCaggctttttaaagattatttggAAAGTGACTGTTAGTTCAATGGCTACAAGTTTAAAACCATCATAAAcacatagttttttttacaatgatCTCAAATTCAATCAAGGCCATAAAAAAAGCTGTCAACATTCCATTGATAACCTTTTCCTCAGCACTGTTTTTTACAGTGATTGCAAAGAGATTCAACCCTCCCATCACTTTATCTGTGTATTCATCAGCACATCAAgttgattttttgtttttgtttaattcatTTTGTAATTAAACTCTGTAAAAGACTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99858 lncRNA upstream 18600 22090620 ~ 22091916 (+) False slc50a1
TU99814 lncRNA upstream 25992 22083682 ~ 22084524 (+) False slc50a1
TU99850 lncRNA upstream 73857 22036278 ~ 22036659 (+) True G74673
XR_005639855.1 lncRNA upstream 384811 21724948 ~ 21725705 (+) True LOC120562851
TU99494 lncRNA upstream 774823 21334669 ~ 21335693 (+) False LOC120563169
TU99933 lncRNA downstream 2554 22115616 ~ 22116026 (+) True G74729
TU99938 lncRNA downstream 6676 22119738 ~ 22121346 (+) True G74732
TU99939 lncRNA downstream 6676 22119738 ~ 22120861 (+) False G74732
TU99945 lncRNA downstream 16590 22129652 ~ 22129914 (+) True G74737
TU99948 lncRNA downstream 40541 22153603 ~ 22154684 (+) False snx27b
XM_039805517.1 mRNA upstream 381 22107943 ~ 22110135 (+) True LOC120562069
XM_039805516.1 mRNA upstream 381 22107943 ~ 22110135 (+) False LOC120562069
XM_039805304.1 mRNA upstream 18553 22083669 ~ 22091963 (+) True slc50a1
XM_039806800.1 mRNA upstream 30214 22069006 ~ 22080302 (+) True efna1b
XM_039804783.1 mRNA upstream 77249 21975192 ~ 22033267 (+) True efna3b
XM_039805520.1 mRNA downstream 1057 22114119 ~ 22115560 (+) True s100a10b
XM_039804670.1 mRNA downstream 8642 22121704 ~ 22124437 (+) True s100w
XM_039804669.1 mRNA downstream 10183 22123245 ~ 22124437 (+) False s100w
XM_039804665.1 mRNA downstream 19653 22132715 ~ 22136094 (+) False LOC120561539
XM_039804664.1 mRNA downstream 24485 22137547 ~ 22139223 (+) True LOC120561537
TU99801 other upstream 340230 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 507286 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 705913 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 1099145 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 2461005 19646975 ~ 19649511 (+) True G73779
TU99947 other downstream 19516 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 24503 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 84732 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 172242 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 183786 22296848 ~ 22306152 (+) False rusc1

Expression Profile