RNA id: XM_039805559.1


Basic Information

Item Value
RNA id XM_039805559.1
length 2526
RNA type mRNA
GC content 0.47
exon number 13
gene id me1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2942726 ~ 3121115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCTACAGCAAATAATCAATCTATGGCAAATTGGATTCATCTCCATACTGTAAGGCATACAGAAATGTGATGAATTGCATGTGACAGAAGCTAATTTGGTTTACCAATATGAAAACAGTACTCCTCAAGAGCAACTATCATCACCGTGTATTGTGCAGCTGCTGTGGCCTAACCTATAGCAGCTTTTTATTCCCTTAACAAGAGGCACCTTGTGCTCTTGGCTCTATGGAAACTCCTCTGATTAGGAATAGAGCCCTTTCTGGCGTGCTCTCCGTAATTTTGGTTCAATGCAAACCCTTTAGTTCCCGGTCAGTCTGTAGAACAAAGAGCTTGTGTAGGCTATCTTAAGGGCTGATTGTTATTCTGTGTATTTTTCCAATCATTTGGAACAAAACCAACACATATCTATAATTATTGAATGTGTGTGCAGAGTccctttcttctctttccttctttctctctgttttgtaACTACTCACTGCTTTTGCTTTTGCTGGGTTTTACAGTGTTGTTGCCAtgttatctcttttctctgACACATTCTCTTTAAAGTCTTTCCTTGCTGTTCCTCCAATCTTGCTTGATATGTGTTTCTGATGGGGCTCCAGGACCGCAACGAGAAACTGTTCTATCGGGTGCTAGCGTCAGACATCGAAAGGTTCATGCCCATCATTTACACCCCCACTGTTGGCCTGGCCTGCCAGCAGTATGGCCTGATATTCAGAAGACCAAGGGGGCTGTTCATCACTATTCATGACCGAGGCCACATCTCTACAATTCTCCAGAACTGGCCAGAAAAGGACGTCAGGGCGGTGTGTGTGACGGATGGAGAGAGGATCCTGGGGCTGGGAGACCTGGGCTGCTGTGGCATGGGCATCCCAGTGGGTAAGCTGGCCCTCTACACAGCCTGTGGAGGTGTGTCGCCACAGCAGTGCCTGCCTGTCATGCTGGATGTAGGCACAGACAATGAGGTGCTGCTGAAGGACCCTCTCTACATTGGGCTGAGACATAAGAGAGTGCGAGGCCAGGCCTATGATGACCTGCTGGATGAATTTATGAAGGCTGTGTCAGACAGGTATGGAATGGACTGTCTGATTCAATTTGAGGACTTTGCAAATGTTAATGCTTTCCGGCTGCTGAGCAAGTACCGCAACAAGTACTGCACATTCAACGATGACATCCAAGgtactgctGCAGTGGCAGTAGCTGGACTCCTGGCAGCTCTCCGCGTCACCAAGAGCAGTATGTGCGACCATACCATTGTGTTCCAAGGTGCAGGGGAGGCAGCGATGGGAATTGCTGAGCTGATCGCCATGGCCATGGAGAAGGAGGGACTCGCTAAGGAAAAGTGTTTGGAAAAGATCTGGATGGTTGATTCCAAGGGCCTCATTGTCAAGGGCCGAGACCAGCTGACTCATGAGAAGGAGAGGTTTGCTCACGAGCATCCACAGATGAAGAAACTGGAGGATGTGGTTCGGGAACTGAAACCCACAGCTATCATCgGTGTGGCGGCTGTTGCCGGAGCCTTCAGCGAGCAGATCATCACAGACATGGCTTCCTTCAATGAACGCCCAATCATCTTTGCCCTCAGCAACCCTACCAGCAAAGCAGAATGCACTGCTGAGCAGTGTTACACACTCACAGAGGGGCGGGGCATCTTTGCCAGTGGCAGCCCATTTGACCCTGTCACCCTGTCCAATGGGAGGACGTTCTACCCTGGTCAGGGAAACAACGCCTACATCTTCCCCGGTGTAGGCCTGAGTGTCACCGTTTGTGGCATCCGACATATTACAGAGGGAATCTTCCTTGCTGCAGCAGAGGCTCTTGCTCACCTGGTGACGGAGAAAGACCTGGCGGAGGGAAGGTTGTATCCTCCTCTCAGCTCCATCAGGGACGTCTCTCTCAAACTGGCTGTAAAGGTCATGGAGTATGCCTATGAGCACAACATGGCGACACTTTACCCGGAGCCGTCTGACAAAGAAGCATATTTGCACTCCCTTACCTATAGCACTGATTATGATGAGTTTGCTGTGGACTCGTACCGCTGGCCAGAGGACAGTATGAATATGCAGTCGTGCAAACTTTAAAACACTGGACAGAGAGACGGAATAAGCGCTGGAGGGGTACAATAAATACTGACATGACATGCGATATCACCACAAGACATGATGTTGGAATATGAAAGAGGCTGTGTGTAGAATTATCTCATTTATATATCACTGTGAAATTAATGGTGGCAACACATGTCGATTTATTGGGCTTTATGTCTTTGATGTCTCCCTCTTCAGTGAAAATCAATATTTAATAATCACTGAACCAAATGAAGCTGACAAAATGTGAAACAGAAAGCACTTTGCAGAacttatatatttaatattccaCTAATGGTTGTTATCACATTGAATTTTACAATACATTTGGTCCTTCACAGGTTACTTTTAGTTGTACTGTAATAGGCAGTTTTTATGACTGTCAGCTATAATCCAAAAACTCTTTGTCAAATAAAAATGGTTTTGATTCATGTT

Function

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94078 lncRNA downstream 608 2940922 ~ 2942118 (-) True G70249
TU94082 lncRNA downstream 8662 2933717 ~ 2934064 (-) True G70253
TU94079 lncRNA downstream 25865 2916457 ~ 2916861 (-) True G70250
TU93957 lncRNA downstream 189458 2749888 ~ 2753268 (-) False G70156
TU93956 lncRNA downstream 189479 2741925 ~ 2753247 (-) False G70156
TU94101 lncRNA upstream 83315 3128267 ~ 3128634 (-) True G70265
TU94092 lncRNA upstream 125377 3170329 ~ 3172511 (-) True G70262
TU94209 lncRNA upstream 391735 3436687 ~ 3436920 (-) True G70352
TU94201 lncRNA upstream 393023 3437975 ~ 3438216 (-) True G70344
TU94215 lncRNA upstream 409220 3454172 ~ 3454938 (-) True G70358
XM_039805969.1 mRNA downstream 124699 2727168 ~ 2818027 (-) False usp45
XM_039805970.1 mRNA downstream 124699 2727168 ~ 2818027 (-) False usp45
XM_039805967.1 mRNA downstream 124699 2727168 ~ 2818027 (-) True usp45
XM_039805968.1 mRNA downstream 127484 2727168 ~ 2815242 (-) False usp45
XM_039805966.1 mRNA downstream 220936 2713443 ~ 2721790 (-) True pnisr
XM_039805532.1 mRNA upstream 128026 3172978 ~ 3268100 (-) False snap91a
XM_039805542.1 mRNA upstream 128026 3172978 ~ 3268100 (-) False snap91a
XM_039805534.1 mRNA upstream 128026 3172978 ~ 3268100 (-) False snap91a
XM_039805543.1 mRNA upstream 128026 3172978 ~ 3268100 (-) False snap91a
XM_039805541.1 mRNA upstream 128026 3172978 ~ 3268100 (-) False snap91a
TU93283 other downstream 2209978 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 2914043 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 2914400 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 2915409 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 2916096 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 584181 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 934359 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 1027372 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 1027372 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 1027372 4072324 ~ 4077779 (-) True eny2

Expression Profile