RNA id: XM_039805594.1


Basic Information

Item Value
RNA id XM_039805594.1
length 2297
RNA type mRNA
GC content 0.55
exon number 1
gene id fzd1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 7295946 ~ 7298242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggagagcaGAACAGGTTGGAACAGCAGACTGAACGCTAGACGGTCAGACGCTTTCCTGGAGGAGTAACGTTACGCTTTCATCTTTTGCGGATTTTAACTGGAGAAGTCGAGTTTGTCATTCAAAATAATCTGTGGATTTGTTTTGTTCCATGTTTGTATCACCTCGGCTCGGTGTGAAGCCGGGGGAAAGGGAAGAGTGAAACCCCGCTGGAAGAAGCTGCTTTTACCTCGCTAAGAAACGCCAACAAAGAGCGTTCAAGgaagtaacgttagcctggcGAGGGGAACGCAAGTAAGTTAGCAACAAATACAAAGTACCGCGGCGGATACGTTCTTCACCATGGCTTACAACAGACTTCTTCGCGCCGTTttgactttgttgttttttacgcTGTTTCTGAACGTGGGGATCTTTCGAGTCAATGGCCAATACGGCGGCGGTGACCGAGGGATGTCTATACCGGAGCACGGATTTTGCCAGCCCATTTCCATCCCGCTGTGTACGGACATCGCGTACAACGAGACCATCATGCCCAACCTGCTCGGTCACACCAACCAGGAGGACGCCGGGCTGGAGGTGCACCAGTTCTACCCGCTGGTTAAAGTCCAGTGCTCTCCGGATTTAAAGTTCTTCCTCTGCTCCATGTATGCGCCCGTGTGCACGGTGCTCGAGCAGGCGCTGCCCCCGTGCCGCTCTCTGTGCGAGCGCGCGCGCCAGGGCTGCGAGGCGCTCATGAACAAGTTCGGCTTCCAGTGGCCCGACAGCCTCGCGTGCGAGACCTTCCCGGTACACGGCGCGGGAGAGCTCTGCGTCGGGCAAAACATGACGGACCGCCCCGAGCCGGACGGCCCCGCGCCGTATCCCACCGAGCGCCCGCCTCCTGGCCCCCCGAACGGTCAGTTCAGCTGCCCGGCTTCGCTCAGGGTGCCTCCCTACCTGAACTACCGCTTCCTCGGGCAGGAGAACTGCGGCGCTCCCTGCGAGCCGAAGAGGTCTCACGGGATGATGTACTTCAGCGAGGAGGAGCTGAAATTCGCCCGGATATGGATCGGCATCTGGTCGGTGCTGTGTTGTGCTTCCACCCTGTTCACGGTGCTGACCTATCTGGTGGACATGAAACGCTTCAGCTACCCGGAGCGGCCCATTGTCTTCCTCTCCGGCTGCTACACCATGGTGTCCATCGCCTACATCGCTGGCTTTCTGCTGGAGGACAAGGTGGTTTGCAATGACAGGTTCGACAATGACATAAGGACCGTGGTGCAGGGCACGAAGAAGGAGGGCTGCACCATCCTCTTCATGATGCTCTACTTCTTCAGCATGGCCAGCTCGCTGTGGTGGGTCATCCTGGCTCTCACCTGGTTCCTGGCAGCGGGGATGAAATGGGGCCACGAGGCCATCGAGGCTAACTCCCAGTACTTCCACTTGGCCGCCTGGGCCGTGCCCGCCATCAAGACCATCACCATCCTAGCCGTAGGCCAGGTGGACGGAGACGTGTTGAGCGGGGTCTGCTTCGTTGGCATCAACAGCGTGGACGCCCTGCGGGGCTTCGTCCTGGCGCCGCTGTTCGTCTACCTGTTCATCGGAACCTCCTTCCTCTTGGCGGGCTTCGTGTCCCTATTTCGCATCCGGACCATCATGAAGCACGACGGCACCAAGACGGAGAAGCTGGAGAAGCTGATGGTGCGGATCGGGATCTTCAGCGTGCTGTACACGGTGCCGGCCACCATCGTCATCGCCTGCTACTTCTACGAGCAGGCGTTCCGAGAGCAGTGGGAGAGGACGTGGGTCAGCCAGACGTGCAAGACGTACGCCGTGCCCTGTCCCGTCCAGAACCACCCCAACATGAGTCCCGACTTCACCGTCTTCATGATCAAGTACCTGATGACGCTGATTGTGGGCATCACGTCCGGCTTCTGGATCTGGTCTGGGAAGACGCTGAACTCGTGGAGGAGGTTTTACACGAGACTGGCCCACAGTAAACAGGGGGAGACCACGGTGTGATGGGGTctcccacctcctccctccctcgGCCCTCACCTCACAGACTGCTTACTGACAAACTGAATGATAaggtacggaagaggattagggtcACATGTGAGAGAATGCAATTCTCACCTTTTTCttacaattcttttttttttattactttttttaagtaaaaaaaaatatcagaattctgactttaatctcagaaaaGTCAGAGATTGAAGTCAAAATTCTGAcctttttttactgaaaaaaactaaagtcagaattctgacttctTAGTATTCTGAGCtttttaggtaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02432 FZD1_7, fz; frizzled 1/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95023 lncRNA upstream 3511 7228707 ~ 7292435 (+) False cdk14
TU95000 lncRNA upstream 388176 6907561 ~ 6907770 (+) True G71013
TU94994 lncRNA upstream 414884 6880782 ~ 6881062 (+) True G71007
TU94985 lncRNA upstream 424017 6871131 ~ 6871929 (+) True G70998
TU94983 lncRNA upstream 430001 6865609 ~ 6865945 (+) True G70996
TU95030 lncRNA downstream 262 7298504 ~ 7299093 (+) True G71039
TU95033 lncRNA downstream 2117 7300359 ~ 7303091 (+) True G71041
TU95034 lncRNA downstream 2117 7300359 ~ 7302315 (+) False G71041
TU95032 lncRNA downstream 4183 7302425 ~ 7303114 (+) False G71041
TU95049 lncRNA downstream 76159 7374401 ~ 7376280 (+) True G71054
XM_039805595.1 mRNA upstream 3511 7039163 ~ 7292435 (+) True cdk14
XM_039805598.1 mRNA upstream 3511 7085713 ~ 7292435 (+) False cdk14
XM_039805600.1 mRNA upstream 3511 7086008 ~ 7292435 (+) False cdk14
XM_039805599.1 mRNA upstream 3511 7094304 ~ 7292435 (+) False cdk14
XM_039805601.1 mRNA upstream 3511 7094314 ~ 7292435 (+) False cdk14
XM_039806231.1 mRNA downstream 158525 7456767 ~ 7483608 (+) False znrf2b
XM_039806230.1 mRNA downstream 158537 7456779 ~ 7500182 (+) True znrf2b
XM_039805052.1 mRNA downstream 366996 7665238 ~ 7707591 (+) True LOC120561797
XM_039805054.1 mRNA downstream 433584 7731826 ~ 7741034 (+) True LOC120561799
XM_039805059.1 mRNA downstream 469517 7767759 ~ 7783482 (+) False rbm42
TU94835 other upstream 1335092 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 1702897 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 1878025 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 2629840 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 3182665 4113209 ~ 4113281 (+) True trnar-ucg_13
TU95170 other downstream 432780 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 823359 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 985139 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 985139 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 1450701 8748943 ~ 8751443 (+) True G71470

Expression Profile