RNA id: XM_039805616.1


Basic Information

Item Value
RNA id XM_039805616.1
length 6689
RNA type mRNA
GC content 0.55
exon number 41
gene id ascc3
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10007275 ~ 10200405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTCCTCCACGGCTCACAGGTGCACTGCGCTCCTTCTCCAATGTCAGCAAGAAGGAGGACTTTACTGATCACCTCCATGATCTGAAGACCAAACGACTAAAGAGACGGGAGCTGTTTGCCAGAGAGGGACTGACGTGGCACAAGATTGTCCATTTCTGCTCTGAGGATCAGGACAAAGCTAAACGGCAAGCTGCCAATCAGGAACTGAAGAGCCTCCTTCTGGCAGCCAAAGAAATTGtGGGGTCTGACCAGGGTCAGGCGGCCTTTGAAAGCGCTGCCGTCTTTCTGTTTGAGACCTTCCACAACAAAGACCATGTGGGCACAGAGGAGACTCGGGCCATTAAACAGATGTTCGGCCCCTTTCCATCATCTGCAGCTGAAGCCTCCTGTGCCTGTGTGGCTCGGCTGGTGGCTCCACTCGGAGAATCCCGAGTGGAGAACTTTATCCAGACCCTGTGCTCCCGTCACAACCCCCAACGAGGCTCTTCTTTTGGACGCAACATTGTCTTCTCGTATGACTGCTACACACTGGACCCACTGGAGGACCTGCCGTGCTCGGGCATCGATGAGGAGAACGTGAGTCTGGACTTCATCAACTTCCTCAACAGCCAGCAGAGTGGGAGGAAGGGCGCCAGTGAGGAAGAGGTGTCCAGCTCAGGGAGATCTCTGAGCTCTGGGGATGGAGCCATCCTTAGAACAGAGGTTGAGAAGTATCTGAATGGAGGCAACATGATCTCATCCAGCCCAGAGGAACTGTGCACCTCCCTGTTTGAAATGCTGGCCTCCCGCAGGAGCGATGATGAGCTGCAGAATGAGCTGTTCGAGCTGCTGGGCCCAGAGGGGCTGGAGATGATCTCCACCCTCCTCCAGCGGAGGGCGGCCATCGTTGACTGCCTCCTCACCATCCCACCTGACAGGACTGGCTACCCACCAGATGGGAGCCGAAAAGCCAGTGGCGATGTGACCAAGCCCACCTATGGGTGCCAGGTGACCATCCAGTCAGAGCAGGAGAAACAGATGATGAAGTTGTACCgcagggaggagaagagagagaggaagagaggcaaAGGAATAGACGACAGCGACTCCTCAGATGCTGCCTTGACCTTCGACCCCAGAGAGATGAGAATCCAGAGGGAGCAGGCCCTGCTGACTGCACGGCGTGAACCTGTactgagcagagagagagtgtatGAACGTATTCGATATCCAAATGTGTATGACAGCTACGCAGAGGCCACAAAGATGCCTGCGTTTGTCGGAGGAGCCAAGATGATGCTACCCGAGGGAATCCGCAGAGAGAACACTAAGATGTATGAAGAGGTGGAGATCCCACCCAACGACCCCATGTCTATTGGTTTTGAAGAGAAGCCCGTCTACATCTCTGAACTAGATGAGATCGGCCAGCTGGTGTTCAAGGGGATGAAGCGTCTGAACAGGATCCAGTCCATCGTGTTTGAGACGGCCTACAACACCAACGAGAACCTGCTCATCTGCGCTCCGACTGGCGCCGGCAAGACCAACATCGCCATGCTGACCGTGCTCCACGAGATCCACCAGCACCTGCAGCCCGGGGGCGTCATCAAGAAGGACGAATTCAAGatCGTATATGTGGCTCCTATGAAGGCCTTGGCAGCTGAGATGACTAATTACTTCAGTAAGCGACTGGAGCCACTGGGCATCACAGTGAAAGAACTCACTGGAGACATGCAGCTAACCAAAGGAGAAATCCTACGAACACagATGTTGGTGACGACTCCAGAGAAGTGGGATGTTGTGACCAGGAAGAGTGTTGGAGATGTGGCTCTCTCCCAGATCGTGCGTCTCCTAATCTTGGATGAAGTTCACCTTCTCCATGAAGACCGAGGACCAGTGCTGGAGAGCCTGGTGGCCAGGACCATCAGACAGGTGGAATCCACCCAGAGTATGATCAGGATCCTGGGACTATCAGCCACCCTGCCCAACTATCTAGATGTGGCCACCTTCCTACATGTCAACCCCTACATTGGCCTCTTTTTCTTTGACAGTCGCTTCAGACCCGTGCCCCTTGGACAGACCTTTGTTGGCATCAAATCCACTAACAAGATCCAGCAGCTTCATGACATGGAGGAGGTTTGCTACAACAAAGTTCTGGAGCAGGTTAAAGCTGGTCATCAGGTGATGGTGTTTGTCCACGCTCGTAATGCCACGGTGAGGACGGCCATGGGGCTGATCGAGATGGCAAAGAACCACGGAGAAATATGCTTCTTCCAACCAGACCAGGGTCCAGACTACGGCCAGTGTGAGAAACAGATCCAGCGCTCCAGAAACAAGCAGATGAAGGAGATGTATCCAGAAGGCTTTGGGATCCATCATGCTGGCATGCTGCGGTCTGACCGCAGCCTGATGGAGAGCATGTTCTCCAAAGGCCACCTCAAGGTGCTGGTCTGTACTGCCACCCTGGCCTGGGGAGTGAACCTGCCGGCCCATGCAGTTATCATCAAGGGTACTCAAATCTACGACGCCAAGCGCGGCGCCCTGGTGGACCTGGGCATCCTGGACGTCATGCAGATTTTCGGGCGTGCAGGTCGTCCCCAGTTTGACAAGTACGGCGAGGGCACCATCATCACCACCCATGAGAAACTGAGCCACTACTTGACCCTGCTGACCCAGCAGAACCCCATCGAGAGCCAGTTCCTGGACAGTCTGGCTGACAATCTCAACGCCGAGATTGCTCTGGGGACGGTCACCAACGTGGAGGAGGCGGTGAAGTGGCTCAGCTATACCTACCTGTATGTTCGCATGAGGGCCAACCCATTGGCATATGGCATCAACCACAAGGCTTATCAGATGGATCCCTCCTTGGAGCTGTACAGGAAGGAGCTCGTGGTGGAGTCAGGCAGGAAGCTGGATAAAGCCAAAATGATCCGCTTCGAGGAGCGCACCGGCTACTATGCCTCCACTGACATGGGCAGGACCGCCAGCCACTTCTACATCAAATACAACACCATAGAGACCTTCAATGAACTTTTCAACTCACAGCGAACAGACGCTGACATCCTCAGTATTGTGTCCAAGGCTGAAGAGTTTGACCAGCTTAAGGTTCGTGACGAGGAGATGGAGGAGCTGGATCAGCTGCTGAGTAACTACTGTGAGCTGCCGGCCGCCGGCGGGGTGGAGAATGGCTACGGCAAAATCAACGTTCTGCTTCAGACGTACATCAGCCGAGGAGAGGTGGACAGCTTCTCTCTCATCTCAGACCTGTCGTACGTGGCACAGAATGCTGCTCGGATCGTCAGGGCTTTGTTCGAGATCGCTCTGAGGAAGCGGTGGCCGGCTATGACCTACCGACTGCTCACCCTCTGTAAAGTGATCGATAAGCGGCTGTGGGGCTTTGCCCACCCTCTCCGCCAGTTCCCCAACCTAAGCCACGTTGTGCTGAACCGCTTGGAGGAGAGGAAGCTCACTGTGGACCAACTGAAGGAAATGAGGAAGGATGAGATCGGTCACATGCTGCACCATGTCAACATTGGGCTTACAGTCAAACAGTGTGTCCACCAGATCCCCTCCATCACAATGGAGGCCAACATTCAGCCAATCACACGCACCGTCCTACGTGTTCGGCTCATCATCACGCCTGACTTTCGCTGGAACGATCAGGTCCATGGTTCAGTGGGCGAGCCGTGGTGGTTATGGGTGGAGGATCCCATCAATGATCACATCTACCACTCGGAGTACTTACTCCTGCAGAAGAAACAGGTGGTAACAGAAGAGCCCCAGCACATAGTCTTCACCATCCCCATCTTTGAGCCGTTGCCCTCCCAGTACTACATCAGGGCAGTGTCTGACCGCTGGCTCGGGGCCGAGGCCGTCTGCATCATTAACTTTCAGAACCTCATCTTGCCTGAGAGACACCCCCCACACACtgAGCTGCTGGACCTGCAGCCGTTGCCGGTGACGGCGCTGGGTAACCGCGAGTATGAGAGCCTGTACAAGTTCACTCACTTCAACCCCATCCAGACTCAGATCTTCCACACGCTGTATCACACCGACACTAACGTCCTGCTGGGGGCGCCAACGGGCTCCGGAAAAACCATCGCCGCAGAGATGGCCATGTTCCGGGTCTTCAACAAGTATCCAACCTCTAAGGTTGTGTATATCGCCCCCCTGAAAGCCCTGGTCCGAGAGAGGATTGAGGACTGGAAGATCAGGATTGAGGAAAAACTGGGGAAGAAAGTGGTGGAACTGACGGGTGACGTGACTCCAGACATGAGAGCTATAGCACAGGCGGACCTCATCGTCACCACACCGGAGAAGTGGGACGGAGTGAGCAGAAGCTGGCAGAACAGAAGCTACGTTCAGAAAGTAGCCATTCTCATCATCGATGAGATCCACCTGCTGGGTGAGGACAGAGGTCCAGTGTTGGAGGTCATTGTGTCCAGGACCAACTTCATCTCCTCTCACACTTCTAGAAGTGTCCGAGTCGTCGGCCTGTCCACAGCTCTGGCCAACGCTCGAGACCTCGCCGACTGGCTGGGAATCGGACAGGTGGGTTTGTTTAACTTCCGTCCGTCTGTTCGCCCTGTACCGCTGGAAGTTCACATCCATGGTTTCCCAGGGCAACACTACTGCCCCCGCATGGCCAGCATGAACAAGCCTACTTTCCAAGCGATACGCAGCCACTCCCCAGCCAAGCCAGTGCTGATTTTTGTCTCATCACGACGGCAAACTCGACTGACCGCCCTGGACCTCATCGCCTTCCTGGCCACAGAGGACAACCCCAAACAGTGGCTGCACCAGGACGAGAGAGAGATAGAGTCTATCATCGCCACAGTAAGAGATTCCAACCTGAAGCTAACGCTGGCCTTTGGGATCGGCATGCATCACGCAGGCCTGcatgagagagacagaaagactgTGGAGGAGCTGTTTGTCAACTGTAAGATCCAGGTTTTGATTGCCACCAGTACTCTGGCGTGGGGCGTGAACTTCCCTGCTCACCTGGTGGTCGTTAAGGGAACAGAATACTATGACGGCAAATCCAGGCGCTACGTGGACTACCCCATTACAGATGTTCTGCAGATGATGGGGCGAGCAGGTCGGCCTCAGTTTGATGACCAGGGCAAAGCGGTTATCCTCGTTCATGACATCAAGAAGGATTtctacaagaagttcctctatgAGCCTTTCCCTGTTGAGTCCAGCCTCCTCACTGTGCTGTCCGACCATCTGAATGCTGAGATTGCTGCAGGAACCATCTCGTCCAAACAGGACGCAATGGACTACATCACCTGGACGTACTTCTTCAGGCGGCTGGTGATGAACCCCAGTTATTACAGCCTAGAAGACATCAGCCACGAGTCCATTAACAAATACCTGTCCAACCTGGTGGAGAGAAGCCTGCGGGACCTGGAGTGCTCTTACTGCATAGAGATAaaagagGATGATCAGACCATTGAGCCACTGACTTATGGTCGCATCTCCTCCTATTACTACTTGAAGCATCAGACCATCCGCACGTTTAAAGAGCGACTGAGGGCGGAGCTGCCCATCCATGAGCTGCTCTCCGTTCTGTCGGATGCAGAGGAGTATGCCGAGCTGCCCGTCAGACACAATGAGGACCAGCTGAACAGTCAGCTGGCTCAGCAGCTCCCCCTGCAGGTTAACCCCCACTCCTATGACAGCGCCCACACCAAGACccacctgctgctgcaggcccACTTCAGCCACGCCCAGCTGCCGTGCAGCGACTACAACACCGACACCAAGACAGTGCTGGACAACACCATTCGAATTTGTCAGGCCATGCTGGATGTTGCTGCCAATGAAGGCTGGCTCGTTACGGCCATCAGTATCTGCAACCTGGTGCAAATGATCGTCCAGGGCCGCTGGCTGCACGACTCCTCATTGCTGACGCTGCCACACATAGAACAACAAGACCTCTATCTTTTCAGAAAATGGGCAAATAAGAAGGAGAGGCCAATCGAAGGACTTCCTGAGCTGATTGCTGCCTGCAATGGAAAGGAAAGTGTTTTCGCTGCTATCGTTGGGCAAGAGTTTCAGTCAAGTCAGATTGCACAGGCATGGTCCTTCCTGAGTCATCTCCCGGTGCTGGAGGTTGAGATGAGTGTGAAGGGCTGGTGGGAGGAGAGCCAGGAGGAGACGGAGCGGCCCCTGCCTGCAGCAGGAACCAACCCGAAGGCGGAGCGCCGCTGGCTGGATGTCCACGCTGACCAGGAGTACGTCCTGCAGGTGTCACTGAGACGCATCAACCTGGGCCAGCAGAGGAGGAAGCAGGACAGTAAGGCCCAGGCACCGAGGTTCCCCAAGGCCAAGGATGAAGGCTGGTTCCTGGTCATGGGAGAGGTGGATCGCAGGGAGCTGCTGGCTGTCAAACGGGTCGGATACGTGCGCCACCGCACCGCTGTGTCTGTGGCCTTCTACACACCGGAGAAGGCTGGGAAGTGCATCTACACACTGTACCTGATGAGTGACAGCTATCTGGGTCTGGACCAGCAGTACGACATCCACCTGAATGTAACACCCGCCAGCATCTCTGCTCAGGTCAACTCCGAGGTGTCCGACTCAGCGACTCAGCTGTCCCTCAAGAGGAACACTGACCGAAAAAGTCGTTGATCAACAGATGAGTGGGATGAATCTGAAACACAAGCGATTGTATTAAAGGATTTCTTCCTGGCATCCTCAAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95726 lncRNA upstream 4781 10003481 ~ 10003693 (+) True G71607
TU95707 lncRNA upstream 179167 9828594 ~ 9829307 (+) True G71591
TU95676 lncRNA upstream 552833 9455375 ~ 9455641 (+) True G71562
TU95671 lncRNA upstream 636526 9371004 ~ 9371948 (+) True G71557
TU95668 lncRNA upstream 684457 9323817 ~ 9324017 (+) True G71554
TU95728 lncRNA downstream 1271 10201676 ~ 10202139 (+) False G71609
TU95729 lncRNA downstream 1271 10201676 ~ 10202591 (+) True G71609
TU95864 lncRNA downstream 379755 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA downstream 379755 10580160 ~ 10589062 (+) False G71723
TU95887 lncRNA downstream 417852 10618257 ~ 10618575 (+) True G71738
XM_039805944.1 mRNA upstream 818385 9147615 ~ 9190089 (+) True hace1
XM_039805945.1 mRNA upstream 818385 9147617 ~ 9190089 (+) False hace1
XM_039807105.1 mRNA upstream 863720 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA upstream 864181 9127850 ~ 9144293 (+) True bves
XM_039804863.1 mRNA upstream 885387 9115711 ~ 9123087 (+) True popdc3
XM_039805617.1 mRNA downstream 15088 10215493 ~ 10241076 (+) False sim1a
XM_039805620.1 mRNA downstream 15088 10215493 ~ 10241076 (+) False sim1a
XM_039805618.1 mRNA downstream 15229 10215634 ~ 10241076 (+) True sim1a
XM_039806375.1 mRNA downstream 127759 10328164 ~ 10357777 (+) True LOC120562586
XM_039806376.1 mRNA downstream 127880 10328285 ~ 10357777 (+) False LOC120562586
unassigned_transcript_348 other upstream 1158754 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1159137 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1159903 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1160993 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 1161319 8847067 ~ 8847155 (+) True trnay-gua_38
TU95730 other downstream 7010 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 585249 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 619890 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 619890 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 1398632 11599037 ~ 11616242 (+) True G71896

Expression Profile