RNA id: XM_039805620.1


Basic Information

Item Value
RNA id XM_039805620.1
length 3828
RNA type mRNA
GC content 0.53
exon number 12
gene id sim1a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10215493 ~ 10241076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCTGCTATCCATAAAGTCACATAGGATGGAAGATATGCGAATGCTGGGCTTTTTGGAGATTCTGCCTGGACACTTTCAACAGGCGTCAGTTTAGCAAACTGTCGGCTATCTGCGCAGAGGGCCTGATGTCCCCAGTGGTTCCACAATCCCTTTGAACATCAGGTGTGATGGATCCAAGTGTGCGGTGAGCCCTCCAATGGGCTGACCAAAGCGCCACTATAATCCTCAGAAATCCAGGAATTAGCCGCTCCCTGCTCGTCGCCAACCACCAGAAAACCTGGGAAATATGGGAATGGGTTCACGCGCCAGCAGCTGTGGATTTTAGGCCGAGCAGAGGGAGAATTCTAGTTCCATGTGTGGAGACGTCGCCGCTCCATTTCAATGCTACGAGACACCTGGACGGACAGTGACTGACCGCAGCGGGACCGAGAGTGGAAGAGCAGCCAGGCGGTGAAACAGAGTCGGCAACATGAAGGAGAAATCTAAAAACGCTGCCCGGACTCGGCGGGAAAAGGAGAATAGTGAATTTTATGAACTGGCTAAACTATTGCCCCTTCCGTCCGCTATCACCTCCCAGCTGGATAAAGCCTCAATCATCCGACTGACAACAAGCtacctgaaaatgagaatagTCTTTCCAGAAGGCCTTGGGGAGTCCTGGGGTCATGTAAGCCGCAGCACTTTGGATGGAGTCACCCAGGAGCTAGGCTCCCATCTCTTACAGACATTAGATGGCTTCATTTTTGTGGTTGCTCCAGATGGGAAAATAATGTACATATCAGAAACAGCATCAGTCCACTTGGGCCTGTCGCAGGTAGAGTTGACGGGAAACAGCATTTATGAATACATCCATCCAGCAGACCATGATGAAATGACAGCCGTCCTCACTGCACACCAGCCTTACCATTCACACTTTGTTCACGAATATGAGATGGAGCGCTCCTTCTTTCTGAGAATGAAATGTGTCCTCGCTAAAAGAAATGCTGGTCTTACCTGCGGAGGCTACAAGGTGATCCACTGTAGTGGCTACCTGAAGATCCGTCAGTACAGCCTGGACATGTCTCCGTTTGACGGCTGCTATCAGAACGTGGGGCTGGTGGCTGTCGGCCACTCGTTGCCACCCAGCGCTGTCACTGACATCAAACTGCACAGCAACATGTTCATGTTCAGGGCCAGCCTGGACATGAAGCTCATCTTCCTCGACTCGCGGGTTGCAGAGCTGACCGGCTACGAGCCTCAGGATCTAATTGAGAAGACTCTCTATCATCATGTCCACAGCTGTGACTCCTTCCACCTGCGATGTGCTCATCACTTGTTGCTGGTGAAAGGTCAGGTCACCACAAAGTATTACCGTTTCTTGGCCAAGCCTGGTGGCTGGGTCTGGGTTCAGAGTTATGCAACCATTGTACACAACAGCCGCTCATCCCGACCTCACTGCATCGTCAGTGTCAACTATGTCCTCACGGAGACAGAGTACAAGGGCCTCCAGCTTTCTCTGGACCAGACCACATCCAAGGCCTCTTTCCCgtaccacagcagcagcaccgccgGCAGCCTTACGGAGAACTGCAGAACTCCCAAGAGCAGAGTATCCCGGCCCAAGACCAAAGCTAGACTCTCGCCATACAGACAGTATCCTAGTTTCCAGACGGAGCGATCCGAGTCGGACCAGGACAGTCCGTGGGGCAGCAGCCCCCTCACTGACTCAGCCTCCCCTCAGCTGCTGGAGCAGAGCGAAGGCCTGGACGCGTCCTGTGTGTACAGGCAGTTCCCCGATCCCCGCCCGCGCTGCTACAGCTTGTCTGACGAGCACCATCACGCCACCAGCGACGGCTACACCCACCTCCATGGTCAAGGACAGAGTTGTGAGCGTGGTCGATGTGAGGCGGGGCGTTATTTTCTCGGCGCACCTCCGACTGGCAGGGACGCGTGGTGGGGCAGCGCCCGGTCCGTCCTACCATTGAGCAAGAGCTCCTTGGAGAACCACGAGGGATATGACAGCAGCGTGCCGCACATCACAGCCATCCACAGCTACAACGGCCGGGGCCACTGGGACGAGGACAGCGTGGTCAGCTCTCCAGACGGAGGCTCAGCCAGTGACTCGGGGGATCGCTACCAAGCTGACCACTACCGCTGTAGCCCGCAGGAACCCAGCAAGATCGAGACGCTGATCCGTGCCACGCAGCAGATGATCAAGGAAGAAGAAAGTCGACTGCAGCTGCGCAAGGGCCCCCCGGATGCTCCACTGGGGCCGGCCAACGGGCTGCCCAAGGGCCCCGGTCCGTGCTTCACTCCTGAGTATACTCAAGGGCCGCTGCCGCTGCAGACGGTGGTGTGTCGAGGTCAGAGTCAGGCCGTCAGCCCCGCGCCCAGTCCCGCCCCCCTGTCCAGGCTCAGCAGTCCAGGTCCCGAGCACCTCCACAAGCCCAAAGACTACCTCCAAACAGATCTGTCCTCCTTCTCTTTGCCATTACACCACCCGTTTGTGCGGCCGGGTCCGTGCTCGGCTTCACCCGCCTCGGCCCCGGCCCTCTACCCCTCCCACACCCACCCGCGGCCCTACTTGGACAAGCATAAAGCCTACTCCCTGACAGGCTACGCTCTGGAGCACCTCTATGACCAAGAGAGCCTGCGGGGCTACTGCACCTCGGCCAACACGGGCCCCGCCCACTACGATGTGACCCCTCACCTCCGCATGCCATCAGAGCAGACCTCCGGACATAAAGGCACCTCTGTAATTATCAGCAGTGGCAGCTAACGCTCATCTAACACACGCAGGACGCCCCAGGTCACACAGCCTGAGCTCCAACAATAAGCCATCGTTATTCCGGATCCTGTTTTTCCATCATACCGATGACTTTCTTCATATTGTTGCTTCATTACACATGGAGCTAcatttagggctgggtatcattcaaAAATGTCCAATACTGGTTGTTACGTCCCTACTGTGTGTAGGGGTGGAGGACGGTAACAATTAAATAAGGCCAAGGGAAAGGCGAAACCATTTCAAGACGAATCaaattatttattgttaaactcaCGAAACTTAAAGCGGTCTCCTAAAAGGAAGACGAATGAATCGCAAAATGTAAACTAAAGAGCAAGGTTTTAAACACACAACTAAACTCAATTAACACAGCCGATAAGAGGATCACACCGGCTCTGGCTTCCACTGTAAGCCTCCACCTCTGCCACAGGCTCAGCACAGCCATTTAACGCCATTTTATAATCGTTACATCGTTACAGCTACGCAGCCTGAGCTGCGGGGTTACGTCACCCACAGCAGCACCCCTGGAGGGACTCGCACACGAGTAGAGAACAACAAAACACGGCACGTACcaccggtaccgataccaataccataTCTTCGATACCTGTTCCTGATCGCTACTTTTGAATAGCAATTTTATAAATTCCATTCGACAATCAATTACAACGTTACACAAATTGTAAGTGTccctacgacgtgtaacgttagacagctaATCAccaacattattagatcttgttagaagcatgctgcgtgctgattggctcactgacactggtgaaatttactccttaggtattgaaattgggtattgaatgacgagccTGTTTTTGTTAGATAGAGATAGCTTTTCgctgtctcttgtagctaatgtgactgaggGGTAAGCGAGatagagtgactgaagagagggagagccCAGCGGCGTTACAGCGAAGCCGTGACTCAGCGAAATAAAGCGGGTTTTCGCCGactcatcactagaaatgcaactgtagcaagcatgtcactatcaccaaagttatccacattcatatttacacgaaacaaat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95729 lncRNA upstream 12902 10201676 ~ 10202591 (+) True G71609
TU95728 lncRNA upstream 13354 10201676 ~ 10202139 (+) False G71609
TU95726 lncRNA upstream 211800 10003481 ~ 10003693 (+) True G71607
TU95707 lncRNA upstream 386186 9828594 ~ 9829307 (+) True G71591
TU95676 lncRNA upstream 759852 9455375 ~ 9455641 (+) True G71562
TU95864 lncRNA downstream 339084 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA downstream 339084 10580160 ~ 10589062 (+) False G71723
TU95887 lncRNA downstream 377181 10618257 ~ 10618575 (+) True G71738
TU95891 lncRNA downstream 502935 10744011 ~ 10744271 (+) True G71741
TU95873 lncRNA downstream 504932 10746008 ~ 10751849 (+) False LOC120561920
XM_039805616.1 mRNA upstream 15088 10008474 ~ 10200405 (+) False ascc3
XM_039805613.1 mRNA upstream 15159 10007275 ~ 10200334 (+) False ascc3
XM_039805615.1 mRNA upstream 15159 10007658 ~ 10200334 (+) True ascc3
XM_039805614.1 mRNA upstream 15159 10007906 ~ 10200334 (+) False ascc3
XM_039805945.1 mRNA upstream 1025404 9147617 ~ 9190089 (+) False hace1
XM_039806375.1 mRNA downstream 87088 10328164 ~ 10357777 (+) True LOC120562586
XM_039806376.1 mRNA downstream 87209 10328285 ~ 10357777 (+) False LOC120562586
XM_039806357.1 mRNA downstream 127789 10368865 ~ 10378754 (+) True LOC120562578
XM_039804822.1 mRNA downstream 275781 10516857 ~ 10518991 (+) True LOC120561655
XM_039805508.1 mRNA downstream 380116 10621192 ~ 10656796 (+) True eif3ea
TU95730 other upstream 7296 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 1365773 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1366156 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1366922 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1368012 8847392 ~ 8847481 (+) True trnay-gua_39
TU95885 other downstream 544578 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 579219 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 579219 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 1357961 11599037 ~ 11616242 (+) True G71896
TU96069 other downstream 1357961 11599037 ~ 11616242 (+) False G71896

Expression Profile