RNA id: XM_039805628.1


Basic Information

Item Value
RNA id XM_039805628.1
length 7540
RNA type mRNA
GC content 0.49
exon number 28
gene id smarcc1a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32166319 ~ 32193048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTCGAAAACTTGCACGGTGAGCGACGCCGTGGAGGAGAAAGACAACGCAGCgaacaaaacacacaatggCGACGGCGGCGACAACGGCAGGCGGAACGGGCTCAGGCGGACCGGCCACCGGTCCGGTCGGCGGCGGGACCGCAGTGGGACGAAAGAAGGACGGTGGTCCTTCCACGAAATTCTGGGAAAGCTCAGAGACGATTTCCCAGTTCGAGACGGTGCGGCAGTGGATCGGAAAGCACTACAAGAAgTATGTCCAGAATGACTCCCCCTCCAGTAAATCCTTGGCGGGCCTGGTGGTCCAGCTGCTGCAGTTCCAGGAGGATGCATTTGGACGCAGGGTCAACAATCCTGCCCTTACCAAGTTACCTGCCAAGTGTTTCCTGGATTTCAAGGCAGGAGGTGCTCTCTGTCACATCTTGGGTTCGGTCTACAAGTTTAAGAGCGAGCAGGGGTGGCGTAGATTTGACCTGCAGAATCCTTCCCGGATGGACAGGAACGTGGAAATGTTCTTAAATGTAGAGAAGAACTTGGTCCAGAACAACTGCTTGACTCGACCCACTGTCTTCCTGTCACCGGACGTTGAGCAGAAACAAGCCAGTAAGCTCAAAGACATCATCAAAAGGCACCAGGGCTCCATTACTGATGACAAGTCAAAGGCCACCCACCACATCTACCCCTCTCCAGCCCAACATGAAGAAGaggAATGGCTTCGCCCTGTCATGAAGAAAGACAAGCAGGTGCTGGTTCACTGGGGTGTGTCCCCTGACAGCTATGATACCTGGGTGTCAGCCAGCGAGGTGGATGGGGACGTGGAGGACCCCCCCAACACTGACAGACCATGGAAGGTCCATGCCAAGTGGGTTTTAGACACCGATGCCTTCAATGAGTGGATGAATGAAGAAGACTATGAGGTAGATGAGAACAAGAAGCCAGTCAGCTTCCGCCAGAGGATCTTCCccaaggaggaggagTCTTCCCGTACACCCGATCGCAAGGAGCGCAAGGCCAACTCTGCCAGCAAGAAGAGGAGGCGCTCGCCCTCGCCACCAAGCACTCCTGCCGAGTCCCGCAAGAAGGGAGGAAAAAAGGGGAACCCGGGGCCTCACTGGAAGCAGCGGCGGGGCCACAGAGGTGAagaggaggacacggaggaggACGTAACTAAGGACATGGACGACTCCTCAGCTGGTGCCAGCATGGAGGAGGGCAACATGTCCAAGAATGCGAATTCAAAGAAAGACAGTGAGAATACTCCAGTGAAAGGAGGGAACGGGGCAGACTTGGATGACATGGAGGACGACTCTGTGCTGTCCGGTGGAAAGgACGATGAGGAACAGAGCAAAGCTGAAATCAACCGACTGATGGACGCTAGCGAGGACAATGTGACTGAACAGACTCACCACATCATCATACCCAGCTATGGAGCTTGGTTTGACTACAACTGCATCCATGAGATTGAGAGAAGAGCCCTGCCTGAGTTCTTCAATGGAAAGAACAAGTCCAAAACTCCAGAAATATACCTGGCCTATCGCAACTTCATGATCGACACATATCGGCTAAACCCTCAGGAGTACCTCACCTCCACCTCCTGTCGCCGGAACTTGACCGGGGATGTCTGTGCCATCATGAGGGTTCATGCATTTTTGGAGCAGTGGGGTTTGGTAAACTACCAGGTCGACTCTGAGAGTCGCCCTTTGCCCATGggccccccacccacaccccaCTTCACCGTGCTGGCTGACACACCATCTGGCCTCATGCCCCTGAACCACAGACCCCCACCGATTCCCCCTCAACAGCCAATGCCCAACTTCGCCGACAAAGGCAAAGACAAGGCCATCGACCTGCAGAACTTCGGCCTTCGCAGCGACCTCTACAACAAGAAAAATCTCAAGGGTAAAGCTGCCAACTCTACCAGGGATTGGACCGAGCAGGAGACTCTACTGCTGCTGGAGGCCCTGGAGATGTTCAAAGACGACTGGAACAAAGTGTCTGAGCACATCGGTTCACGCACCCAGGACGAGTGTATCCTGCATTTCTTGCGGCTACCCATTGAGGATCCGTACATGGAGAGCACTGAGGCCTCCCTGGGCCCTCTGGCCTACCAGCCCATACCCTTCAGCCAGTCTGGAAACCCTGTCATGAGCACAGTAGCCTTCCTGGCCTCTGTGGTCGATCCCAGAGTGGCGTCTGCTGCTGCCAGGGCAGCCCTAGagGAGTTCTCCCGTGTCCGTGAGGAGGTGCCAGCTGAGTTGGTGGAGGCTCACGTGAAGAAGGTGCAGGAGGCAGCCAGGAGCACAGGAAAGGTGGACCCCGCCTTCGGCCTGGAGAGCAGTGGCATTGCTGGCACCGCCCCTGAGGAACCAGAAAAGACCGAAACCCCAGAGGCAGAGAAGATAGACACGGACACAGATTCCCAACAGGCTGATAAGGCGGAGTTAAAGGACGAGGCAGAGAAGCCCAGCGAGTCTGCGGAGAAGAGCGACAAGACAGAGGCCACAGAAAAGGTGAAGGAGGGATCCGAGGCGTCGGAGCGTGATGAGGAGAGtgaagagggaggggaggcCAAAACGGCTTCAGacaaagacaaagaggagGCTATGGAGACGTCGTCCTCAGAACAGGAAAAGGATAAGGAGGAGAAGGCAGCTACAGAGGAGGGAGATGAAAAGAGGAAGAAACTGGAGCATGACATTGGAGAGGGGAACATTGCCACCGCAGCTGCTGCTGCCCTGGCATCTGCTGCCACCAAGGCCAAGCACTTGGCGGCggtggaggagaggaagatcaagTCCCTGGTGGCTCTGCTGGTGGAGACCCAGATGAAGAAGTTGGAGATCAAGCTGAGGCACTTTGAGGAGCTCGAGACCATCATGGACCGAGAGAAAGAGGCTTTGGAGCTTCAGCGACAGCAGCTGCTCACTGAGCGACAGGCGTTCCACATGGAGCAGCTTAAATATGCCGAGATGAAGGCGAGGCAGCAGATGGAGCAGCAAGCCGCCGCCGCGGCTGCCGCTGCTGCCCAGGCTCAAGGACAGGGGCAGGCTCCTGGATCTGCACCCAACTCGGGGCCCCCTCCATCAGGCATGCACCCTGGAGGGCCCCCACCACACCACGGTGCCCCAGTGCCCTACCACGGAGGGCCTCCACCCGGTGCTGCCATGCACCCAGGCTACCCTCCGATGGGTCACCACCCCATGGCCCCTCACCACCCAggacagacagGACCAATGGGACCAGGCCAGCCCATACCGGGACGTATGATGCCTGGCCCACCCTCTGCCGCACCCCCTCCTGGCGGCATGCCTCCTATGATGCCCCCACGTCACCCTGGAGCACCCAACGGCATGTACCCTGGCCCACAACCTGCACAGCCTGAAGCGGTACCTCAAGTTCCTGTGGGTCCTCCAGCGCCCGCGAGTGGCAGAGTGGCTGAAAACTAAGACCTAcgttcacaaacacacacaaaagcgcacacacacacacacacacacacacacacacacacacacacaaaactaactATCTCTGAACCCCTTTTTGATGGCCTTTGCTACTGGCTCGGTATATTTCCCTCAACACTCAAAACTACCATCAACTTTATCACAggtcacacacacccacatacacactcagGGTCTCTCAGTGGCAAGGGTAACCCAAttatccacacacacatccagactTCCTCTCAGGGCACAGCGCAAGGGTCGTCGTAGTAATAAACACTGTTTTCTGCTCTGTTGGGCCAAATGGAGGTTGGAGAGAATGGACTGTGTATGGAAAACAAAACCAGGAGAgagaatgattaaaaaaaaaaaaaaaactttcttacctttttcttttttcaatgcTGTTTTGACACTCTAATCCCCCCCTCTCCCATCTCTCTTTAAAACACACACCTCCTTATGTCTGGTGCCCCCTTTTGCAAGCCAAACACTAGGGGGAGCTAGTGAGAGCAGAAGGCCAGTCAGACATGCAGGGTGGTGAGTGTGTGCTGAGCAACCTCAGCGGTAACACACACGTTACTCAGATTATGATATGActaaatctcacacacacacacagaggggggGCCAGCCTACCCTCGCTCTTGTCTTGTTGAGTATCTACCTCTCGcccttttttaaatgatacaCTGTAgttctgtgtgtgggtgtgtgtctgtgaaagtgtgtttcatGGCCCTTCACGCGTCTGCCACCTCTGACCAAAGTTTGTGCCACTTGTGTAATCTTTGCTTTTCCATTTGAGACTTTTGCAATAATGAGTTGAGATACAGACATAAGATACTCTTTGGTCAATAAAGTACAAGTTGGACAAACGAGGCAGGTTTatggataaaaaaaactaaactaaacttgtTTTTTAAGACCTGTTAATAGTTATTAAAGGTTCTTCTTTCTTGCCGCCACAAAAAAGTAGTTTTTAAGTAGTAGTTTGACAAGATACGTCTCCGTTCCCATTCCAACCCAAACCAAGATGGCGACTGGAAAGTTTTTCGTCACTACGGAGTGGAGTTTGAAGATTATCTGCCAAAATGCATCAATTCATGTCTACTTTTTGACTTTCTTGGCTGACTTCAAAAGGATATGATTGACTTTATTGGGTTTATCAACAAaccccatgaaaagaccaaaacaaacaatGCATTAGACTGACTCTGATtactttctgacttccctaCTCAGTCTGTAGCTCTCAACCCCATGCCCGTTGGTTCCCACTGAAGGCTCAGTAGTTTgccactgtagtttttagcaaatcCTACTCAAACGGGAGTAAACAAAGCCTTcgttggggactatttttagCAGTGGATTAATCAACATTTGTTGCTCTAATGTTGAATTTCctcaaaataaatgtgtttgtggGAAACAAGGAACATGTCAGCCAGTGCAAAAATCTGGCCCATCCATGTGtttaaatagtttttggacaacaatggagttctatggcacagaggaaccAATTCATGGTTGCTTTTGGTTCTGATGAAAGCAGTTTTGCTCGATACGTCACCACCTAGGTACAGTTAATAAATGGATCATTGGAGCCCTGCAGTGTGCGagctatttatttctgttacttcATATGTTTTTGCTCATTTTTGGCTCAGCACCTGTCGTCCTTGGTTTGGATGTGCGACCATAAGGAAAATGTACTGTATCACCAGACGTAtcttttaaacattaaagcataAGTCTCAGATCTGATTACTCGCGAGACACAAGGCGATGCTCGGTCAGAGACTATTAGAGGACAGACGGCTAAACACACAATCGTTCCCTCTGCCCCACACTAACCACagtactgtaacacacacacacacacacacacacagagatagaaaTGTAAGCTAAGCTGAGGCTCACACTGGAGGCTGCATGCGTACACTGACTTGGCCGGACCCTGCCCGCAACGCACtggacaaccacacacacagatacatgaacacgcacacatatacatTTAATCTCCTGCTGACCTTCCCACAGCCTTTACAGAGAGGGAGACGCTGTGATATGGCTCGACTGAGACATCAGAACATGAATGACGCTCTTCCTCAGCGCGGTGGGCTTCTAGATGTTTTTAGGTGCTGATACTGTAGCGAATAAACCCcgccaccctcctcctcctctgctcacGCCTAGTGCTGCCTACCTCGCTAGCCCCGCCTCACGCACAAAAACTGTTTTGCTTTTATGGCCACCAGCCACGGGAAAACTAAAGCAATATCCTCATTCCTGTGTATCAACCTATTTGTGGTCGGCACACAGAGAAATACGGCTCTGCCGACGAGAAGCAATCATGATTTCACAATTTGGTCCTCATTTCTGTCCTGTGGTGTCGTACATAAAGAGCTGCGTAAACAAGGGGAACAACCacccaacatttatttatagagctGAAATTACAGGCAATTGATTAGTCAATCCACAGGAAATTAATTGAGAACAATTTTGtgatttgtcatttttcaagcaaaaataacaacgttctctggttccagcttttcAGATGTGAATTTTTGGtgattttctttgtcttatatgATGATTAATTGAATATCTATAGACGTATATAATAGACATCACCTTGAGCTTCAGGAGTTTGTAAGAGGTGCATTTTTACCATCtcctgacattttattgactgaaataatctgccctgttcttttcattatcaataaattatttaatcGTGAGATTTAAAGCTGTACTCGGCAGATATTTGGTAATTTTGCTTGGTAATCGGTTACCTAGATTTCCTGTTGACTAATTGGTTAATGCGATTGAAAAGCTCATTCTTGACCCCCTGCCAAGAAGCAGTCTCATTCTTACTATTGTATCACACAATATTCCTCAGCAGTTGTTACGATGTTTTAGATGTTCAAATTTCCGTTGTTTTCTGCACATTTTAACGACTTTGCATTTTGGCTTTAAAGTTTAGACTGAAAGTTCCTTCTCAACCTCGGAATCCGCAGTTGGCTCAACAATCTCGCCAGAAGATCAATTTGTAGCCGTTGAGCAGCTTTTGGTCGTATTACAATCTTCCTCGGCAGATGAGGTTGCCCAGTTGTCGTGGGAATCCCTAAAATGCTCAAAATAGATTTGGACAGCTACAATTCCACGACAAGTGCTTGAGGAATACCATGTATTGCAATCAAAAGCTCTAAAACCGCTAATACAGGACCACGCGACGAGACTGTTTAGCCAACTACTCGATTGTTTTCATCCCTACACGAATAGAAAAGAAACGGTGACGTGACTTAGCTTTCTACATTTTCCATTTAAGTCTTTGAGTTGACCGTGCATGTTGGCTTGAAATAAAGGTAAACTAATACTGACAATAGGAAAATGAGTAAGCTAAACTCAAGTGGCTCCTGCTCACTCTACTAAATTCCTCAGAAACTGAACGGATATGGCGCGCTGCATCGCTCTTCAGTCGACACAAAGGTTGATAATAagctaaaagtttttttttaatgtgaagTTTTAACTGAAATTACTTCTCTCCCCCCTTCGCTAGCACTCTCTGCTACCTCTTCCTCGTCCATCCGCTAGCTACCTCTTCTAGAAATCTTCCTCTCGCTATCTGCTACCTCTCTGCGCACCCCTTCGCTACCTCTCGTTcccatttccttttctttttatgcctattttttttttttcctgcccaCGTGACTGCTTCATCACTGATCGTTGCCCTCTTCTACCAGTCTGATGGAAGAAGAAAACCTACGTACAGTCGTTCACTCTTGCTCTCATTCACCGCGCCCTCCTTTCCCATTCAACATCTTTTACAGGCTTGTTATGTAATATCACTTAAATATGACGGGAATCCCCTTCACATATATTATCTTTAATCGATACTTTTTTGTGTTGATGGTATGTATTTTTAAGGAGACGTTTTGTGTAGATGGAAGTTATGTTATTTGAAAGTTTGtagcattttgttttttcttttgtatgGGGGTCTGTTGGTACTTGGACCTAGACACTGTCAAATAAACTGTTTTGTATGAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11649 SMARCC; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103929 lncRNA upstream 26176 32138777 ~ 32140143 (+) True G77722
TU103887 lncRNA upstream 175949 31989886 ~ 31990370 (+) True G77687
TU103884 lncRNA upstream 180579 31985466 ~ 31985740 (+) True G77685
TU103883 lncRNA upstream 183603 31982468 ~ 31982716 (+) True G77684
TU103882 lncRNA upstream 183927 31980051 ~ 31982392 (+) True G77683
TU103984 lncRNA downstream 102047 32295095 ~ 32295320 (+) True G77757
TU103992 lncRNA downstream 167497 32360545 ~ 32369078 (+) True G77764
TU103989 lncRNA downstream 181649 32374697 ~ 32376913 (+) True G77762
TU104008 lncRNA downstream 260139 32453187 ~ 32453410 (+) True G77776
TU104096 lncRNA downstream 573223 32766271 ~ 32766508 (+) True G77862
XM_039805801.1 mRNA upstream 16988 32145392 ~ 32149331 (+) True LOC120562212
XM_039806046.1 mRNA upstream 41942 32090158 ~ 32124377 (+) True dpy19l1l
XM_039805810.1 mRNA upstream 206921 31949622 ~ 31959398 (+) True herpud2
XM_039805808.1 mRNA upstream 218546 31943411 ~ 31947773 (+) True pkdc
XM_039805809.1 mRNA upstream 218546 31943411 ~ 31947773 (+) False pkdc
XM_039806158.1 mRNA downstream 11706 32204754 ~ 32212177 (+) True LOC120562445
XM_039806026.1 mRNA downstream 35955 32229003 ~ 32293702 (+) False cspg5a
XM_039806033.1 mRNA downstream 35955 32229003 ~ 32293608 (+) True cspg5a
XM_039806034.1 mRNA downstream 35955 32229003 ~ 32293607 (+) False cspg5a
XM_039806024.1 mRNA downstream 35956 32229004 ~ 32293702 (+) False cspg5a
TU103881 other upstream 186410 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1030173 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2041681 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2753906 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 2776427 29384135 ~ 29389892 (+) True LOC120562177
XR_005639638.1 other downstream 212085 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 212085 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 907365 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 1432883 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 1437991 33631039 ~ 33631110 (+) True trnap-agg_4

Expression Profile