RNA id: XM_039805639.1


Basic Information

Item Value
RNA id XM_039805639.1
length 4740
RNA type mRNA
GC content 0.46
exon number 19
gene id spag1b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 295507 ~ 321882 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTGCGTTACGTGTTTCCGCTTTGGAGTGCAGCTTCCTTCCATGTGTGGTTACCATAGTAACAGACCCCGCTTTGCAGATAATAGTTTATCCAAATAGGCCAAACAGCAGCAGGTATGAGCGCAGATACGGTTTTCTCTCTTCAAAACCAGTCTACCACCATTGACTATAGAGGGAAGGTCCCTGTGGAGCACCTGGATTATGGTTACATTGAAAAATGCAAAGATGTAAAATACCTGGAGCAGATCTTGAGAGTACTGAGGTCTGGCGATGAGGGCATTTATCCTCATCTGATTAAGTTCTGTGAGAGTCACTTGGAGAAACTGGACCCTAGGAGCCGAGTTCTCAGGAAGGAAACCCCTGTGGCCACAGCAGCCAGCCTTTCTAATGATGAGTGGAGCCAAATTGTTGATGATTTGAAGACATGGCAAGAAGAAACCAAAAAGACTGAGACTTCACTGAAACAGCAGTCAATGTTTGATGATCTAGTGAAAGAAAATATGCCACCTATAAGAGGTTCCAATTGCTCCTTTCCACTTAGTCAGACTTCAGTTCCAAAAAGGAATCCTTCAAAACATGCTCTCCCATGTGATTATAGAGAATGGGACAAGTTTGATGTCGAAAAAGAATGTGAAGAAATCGACGGCAATTCTGTCAAAAATGATCCAGCTGCCATTATAAACACAGGACACCCCAAATTAAAGACTAAAGTGGATGCATCATTGCTGACACAACAGGAAAAGCTCCTTCTGTCAACTCGTGAAAAGGACAAAGGCAATGAAGCTTTCAGAGCAAAGGATTATGAGGAAGCAGTTGCATACTATTCCAGGAGCCTTTCCATTATACCAACGTTGCCTGCATACAACAACAGAGCCCAGGCAGAGATCAATCTAAAGCACTGGCACAATGCCATGAGAGACTGTCTGAGAGTACTCGAGCTGGAGCCAGGCAATATGAAAGCCCTGCTACGTCGTGCCAAAGTTTATAATCACATGGGCAACTTCCAAATGGCTGCTGAAGACCTGAGGGTGGTGCTTCGGGAAGAGCCGCAGAATGCTGCAGCCACTCAACTTCTGTCTGAAACTGAGAAGAAAATGAAGGAATGTCAACCGGAGCCGCACAGCAAAGGCAAAAAAATCCTCATCCAAGAAGTAGACGAGGAAGATGACAACAATAACGATGAGACAAAAGCAGAACACACTGCTTGTCCGGTTGAACCCAGCCAGCCtgtgggaggggaggagagcTCAGCCGCTCCTGCCGAAAGGGGAGACATGGGTAACGCTCAAAAAAAGCCCCACAGCAGAGGGGACGGGGGTCCTCACAGTGATTTCACCAACTCCCATCAAGGACActggaggagcagaggaggaagCTCTGACAAGTACAAAGTCACGCAGGAGTCCAAGGAAAAGGTAGCCAATGGAACTGGCAAGAGCGGCTCGACGGCTTCAGTGCCGGCTGATCATAGCAACAACGGTAAAGAAACTCCGGCTAGAGGAAATGCAGGGGAAACTGTCAACCTTGATGCCCCATGTGGAGCCCTGCCCCCACCCCTGGCCCGGCTAAAGAATGAAGGAAACCTGCTATTTAAAAATGGACAGTTTGCCGATGCACTGGAGAAATACTCACAAGCCATTCAAGGATTTATAGATTCAGGGATTGATAGTCCAGAGGATctatgtattctgtattctaaCAGAGCAGCTTGCTACCTTAAAGATGGCAACAGTCAAGAGTGCATACAGGACTGCACAAGAGCCCTGGAGCTGCAGTCATTCTCCCTCAAGCCCCTCCTGCGCCGGGCCATGGCTTATGAGTCCATGGAGCGCTACCGTCAGGCCTACGTGGATTACAAGACTGTCCTGCAGATAGACACCAGCGTGCAGTCAGCACACGACAGCGTCAACAGGATCACTCGGCTGCTGATTGAGCAGGACGGCCCAGAGTGGAGAGAGAAACTTCCAGACATTCCCCTGGTGCCTCTGTCAGCTCAGCAGCACCGCAGAGAGGGGCCACCCAGCGCAGAGGTCCTTAAGGCTCGAGCAGAGAAGGCAGCCATAGATGCAGAAAGGAAAGCAGAAGTCCGTTTTACAGCTTTGAAACAAGAAGGGAATGACTTTGTGAAGAAGGGCCAATACTCGGATGCACTGGGAAAGTACACTGAATGCCTTAAGCTAAAGCCAGAAGAGTGTGCTATCTACACCAACAGagcTCTGTGCTACTTGAAGCTGGATAGGTTTACCGAGGCCAAGCAGGATTGTGATGCAGCACTGAAAGTGGAGCCAACCAATAAGAAGGCCTTCTACAGACGAGCCCTGGCTAATAAAGGCCTTAAGGACTACCTGGCGTGCAGCTCTGACCTGCAGGAGGTACTGCAGCAGGATCCCAACGTGCAGGAGGCTGAGAAGGAGCTGGAGGAGGTCACGGTGCTGCTCAGACAGAGTCTGGCCAGTGCCAACGCTTCACCAGCCAAACCCAGAACGACTGTCCCCATCACAGAGGTTGAGGGTGACGAGGAACCAGCCGGCGCTCCTGCCTCAGAGAGCAGTCGCAGAGGAGAGGACATCATCGTCAACCTCCAGCCGACCGACGCCTGCCAGTTTGGCCAGGCTCTGAACGCGGCTCGCTGCAGCAGAAACACGGCAGCCTGCGCTGACCTGCTGGCCTCCACAGCCCCGGAGATGCTTCCCAAATTCCTGAGTACCCATCTGGATGGAGACAACATCAGCTTCATCATACAGGCGCTGGACTACCACCTCCTGGAGAAAGACCCCAACCTGGTCTACCAACATCTCAACAACCTGCACACCACCGACAGGTTCTCGGTTGTGTTGATGCTGCTGGAGAAGAACGAGCGTCTCCACGTGACTCAGCTGTTTGAGCATCTGTCTGCCGTGCAGAGCACAGAGTTCACCAAGAACGATGTCCAGAATCTGGCCAACAAATACATTTGACCCTCCTGGCCCTGCTCCCTGCTGCATGAGCTGCTGCACCATGACAACTCTTGGATCTATGCAAAACACTGCACCAGAACTGAGTACACAAAGGCAGGAAGCTGCAGAATGTGCCCCAGAGCAAAATACCATGGAACTGAATCACATTCACTCTACTGGTCTGTGCTGTAAATTATCTGATCACTGTATGTTTGAGTGACAGTATAAGGAATATATTTTTCTCTCCAAAACATTTTGCTATGCAGATTTACTTTTGTACCACCACTAACCATATGCATTGTACAACACGCAGACAGTGGGATACTATGGGCATCTAGTGTATTGATAAATGGGGTCCAATGTACAATGTTATGTAAGGCTGCCGGCAAGTGTTCCctacaggcaggcaggcagtttGCTCAGGACAGGCTCATGTTCCCAGGACTGAGCTTCGTCTGTCTTATGATATCAGTCCTCTAATAAATGAGCTTCCGTCAGACACCAGCCAAGTTTAGAAATGATATTCAGCGCATGCTGATATTACCTAGCCAAGGAACAAGTTGGGACATTTGCTACTGAGCTAATTAATAAGTTTTTTGCTGTGAGTCAAAACTATAAGATAAACAGTTTTTATTATGACCATATGTACTCTATGATCTCTGTGGGAGATATAGGCCTGCATGATATCTTATTGCTGTTCTGTGCGGTATGATACCAGTATATGTTGAACTGATATCTACTGACAATGTTGtaggaggaaaaaatacaatttgtaaCCTTACATGACTCAGCAGATGCTCTCTTTGGTTTATTCAGCTATGCAATCAGCAGATCTGGGTTTTAATGTCAAATCACTCTGAAAGGCTGGTGTTTGTGTCTTTTCCGTAAGGAATGACAAAGTCTTTCAACCCCTCCGTTTACCAAATTAGCCCGACAGCCAGCGCACATCTGCACATTCATCTGCAAGCAGTTCAGCCATGCAGATGTGTACACAATGGAGAGAAGCAGCATCCTACTGAGATGTGTGCCTTAGATGTCAGACTAGGGGTTGACTTACTTTTTGGTGAGTGTGCAGATACTCCTAAAGAGagagtatatatgtatgtcacTCAGTAGCTTTTATCAAAATGTTAAATGGTTTGGATTCATGCATCATAAATCATACATATATTCACGTAGCTATATATGCACAtacttgtttaaaatgtcatttatttactAATAAAAGAGATTCTATCaacattaaatatttaattattaaacatTCCAGAGGGGCTGGGGgggaaatcgatacagcatagtatcacaatattttccgtggcaatacagTATCGATACATGGAcgccaagtattgatctttgattatataaattgcacatgagaatttaacttatttgtcagtttgtctgcttgacagtccattttgcagcaataaaagtgACATGAGATAAACAAAGATGAGTTATTTCCCtaatttgaaattggaaaaCAAGGTAATaagtttaaaatcacaataatacTGTATTCCCAGCCCTACAGTCCAGTCTCCATAGACTGCTTGAATCCAAACCattctttgttttcaaatgttttagCAATCTACATGAATGTACCAAATTTAGTTCAGGGTGACAAGGTGGGTGGGGGCAAGAGGCAATATTTTCATGTACTGCAGTTTCTCTTCAACATTATATTTCAGTAGAGATGTAAAATAAGTGTGTACAGTACTCAGAGGGCTATTTAATaaactggagaaaaaaagtTCTTCTCTGTGCTAAGATGAAATTAAATagttaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93218 lncRNA downstream 48567 246688 ~ 246940 (-) True G69564
TU93185 lncRNA downstream 62009 217828 ~ 233498 (-) True G69541
TU93176 lncRNA downstream 140215 155074 ~ 155292 (-) True G69539
TU93168 lncRNA downstream 235407 58702 ~ 60100 (-) False G69532
TU93271 lncRNA upstream 21771 342587 ~ 343038 (-) True G69615
TU93309 lncRNA upstream 484234 805050 ~ 805302 (-) True G69650
TU93366 lncRNA upstream 642680 963496 ~ 963736 (-) True G69698
XR_005639806.1 lncRNA upstream 732514 1053330 ~ 1055361 (-) True LOC120562682
TU93421 lncRNA upstream 759563 1080379 ~ 1080878 (-) True G69742
XM_039805286.1 mRNA downstream 117209 157257 ~ 178298 (-) True LOC120561943
XM_039805631.1 mRNA upstream 23722 344538 ~ 724566 (-) False LOC120562122
XM_039805634.1 mRNA upstream 23722 344538 ~ 724566 (-) False LOC120562122
XM_039805630.1 mRNA upstream 23722 344538 ~ 724566 (-) True LOC120562122
XM_039805632.1 mRNA upstream 23722 344538 ~ 724566 (-) False LOC120562122
XM_039804740.1 mRNA upstream 407669 728485 ~ 732756 (-) True osr2
unassigned_transcript_293 other downstream 266824 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 267181 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 268190 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 268877 26557 ~ 26630 (-) True trnai-aau_13
unassigned_transcript_289 other downstream 269235 26200 ~ 26272 (-) True trnar-ucg_6
TU93283 other upstream 409108 729924 ~ 732748 (-) False osr2
TU94269 other upstream 3308317 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 3658495 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 3751508 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 3751508 4072324 ~ 4077779 (-) False eny2

Expression Profile