RNA id: XM_039805667.1



Basic Information


Item Value
RNA id XM_039805667.1
length 6240
RNA type mRNA
GC content 0.49
exon number 5
gene id erfl3
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24621700 ~ 24677297 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAACACGACACCCCGAGGACTGAGAGACGCACGGGGGGAGGAGAGAGTAGCACTGAATGGTGTTAGAGAGAGTGGAggacttaaaaaaaagtctgtaaaGAAAGAGAGGTTCCTCTCCAACGTTCATTTCTGTCAAAGAACAAAGCGAGATGTCAAACAGCGACGAAGATGCGGTTGAGACGGAGTAAACAGCTACCGGACAGTTAGCGAAAGAACTtgttaaaagagagagagagagagagcctttACGGCTGGCTCGAGTCGTTTTCCGCCGCAACTTGGGCAGATTTGAACGCTGCCAGTTACGGGACGAGAAGCGAGGACCAACAGCGAGGTCTTGACCGCTGAAAGGCAAGCCATTCGGTCGGTTTGGTCGGTTGGCAGAGATCCGCTGAAACGGACCGAGAGTGCGCGGTGGCCCGAGAAGAGAGAGCCGCTGAAGCAGCAGCTACAAAAGTTTGCCGTATATTCACCCAGTTTTCCAGATTGGGAACTAGAGGGGGGAGGAAGAGGCCGAGAGACGGGCTTTTCTTTCCACAAGCAACTTTGTGGAATTCATCCTGTTGACCAAACTTTAACCGCTTGCTGTCTAGCTAAGTAgctaaagcagaaaaaaatgaaaacacctgGAGATAATGGGATCGCCTTCCCAGAATGGGCTTACAAGCCTGAGTCGAGTCCCGGGTCCAGGCAGATCCAGCTGTGGCACTTCATCCTGGAGCTGCTCAGGAAAGAAGAGTATCATGATGTCATCGCCTGGCAGGGGGACTACGGCGAGTTTGTCATCAAGGACCCGGATGAAGTGGCCCGGCTGTGGGGAGCCAGGAAGTGTAAACCCCAAATGAACTATGATAAGCTGAGCAGGGCACTCAGataCTACTACAACAAGAGGATCCTCCATAAGACCAAAGGGAAGAGGTTCACCTATAAGTTCAACTTCAATAAACTGGTTTTGGTCAACTACCCCTTTATCGACATGGGCTCCACTGGAAGCAGCGTTCCTCAGAGTGCCCCTCCTGTCCCCTCTGGTGCAGGGACTCACTTCCGCTTTCCTCCCTCAACGCCCTCCGAAGTCCTCTCCCCGAACGAGGATCTGCGCAGCCCCGGTGGCATGTTCAGCTCTGTGGCCCGACGAATGGCACGAGGCTCCGTCAGCGATTGCAGCGACGGCACCTCTGTCAATTCTGAGATTGAGGAAGGCAACACTGGAGCGgcggaggagaggggagagaggggtgtgagtggaggaggaggatctggtggtggaggaggaggttaCCGGAGTATCATCCATCCCCGTCTGTCTCATGAAGCCCTGTTCCGCATGTATGGAGGACCGGGTAACCCTGCAGGGCACCCAGGCTCCCGTGGTCACACAGGGCACCGGATCCACCCAGATTCCCTGTCGCCCTTCCCCGTGTCCCCTCTGCCAGGGCCAGGAGGAGCTGGCCTCCTAGCCCCTCCTCTGTCCCCAGCGCTCTCCATGACCCCGACATCTCACCTCCCCTACACCCCCTCTCCCACCCTGTCACCCATGTTAGGCTCCCACTTCTCCTTTAACCCAGAGGACATGAAGCGCTACCTGCAGGCCCACACCCAGTCGGTGTACAACTACGGCCTCAGCCCCAGAGCTTTCCTCCATTACCCCAACATCGTCATCCCTCAGCCCCACCGGCCCGCCGCAGACAAGGCTGGTCTGAGCGGAGAGAGAGTAGCTGCCGAGAGAGCAGAAAGAGCAGCGACTgcaggggggggagagaggggaggagaacgGCACCACCATCCACCTCTGGCTCACTCTGCCCACCACCACCCACATCCACCTCATTCTGCCCATCCTCACACCCATTCTCATCCCATGCATCACCCACTCCACCTGGGTGAGGAGCCTCCACACATGTCTCCCTTCAAGTTCAAGTTGCAGCCACCGCCACTGGGTAGGAAGCACAGGGAGAGTCAAAGCCAGAGTAAACCCAGGCAGAGCTCACTGTCCTCAGGATCTGGGTCCATGTCGTCTACCTCTGGCCTGGGTTCCTCGCTGTCATTCGGCAGTGACCTGAGCTCAGCCAGCGGCTCAGGCCTcatctctgcctcctcctcaacGCAGTCTCTAAACAGTGCAGGACTTCCCAAGATAAAGGTGGAGCCCATCTCTGATATCGAGTCAGAGGAAGAGGTGGAGGTGACCGACATTAGTGACGAGGACCCAGATGAGAGGGATGAGGAGTTTGAACTCTTTTCCCCTCGCCACTCCAGAGCCCCTGACCACCACCACCGCCAacaccaccaacaccaccaaCACCTTGCTAACGGCACAGTCGCGCCCCAACATCACCCCCATCCTGATGAGGACCTGGACGAGGATGTCTTCAAAGCCCCTGCTCCGCCTCCACCTGGCCTGATGCCCTTCTTCACCTCGCAGCACACACACTCCAGTCCACTCCATCGCATGCTGCCCACTCTTAAGAGTGAACCCACCGAACCAGGGGACAGTAACACACCCCCACCTCAGACGGGCTCGGCGGGAGCGTCACAGACAAAGTGCATCCCCCTTAAGCTGCGCTTCAAGAGGCGCTGGAGCGAAGACCAGCGCATGGAGGCCTCACAGGAGGAGTCCGACGACAAGAAAGTAcggccagaggaggagagggaaagagggaggcaAAGTAATGGACggatggagatggaggaggatggGACATGCAGTGGAGAAGGGGACAGTCCTCCCCCATTGGCATACGAGGGCTCTTTAGCCACACCGTTGGCCTCACAGCGTAGGGTGAGCGCTGAGCTGCATCGCGCCACTGCACAGCTGTCTCTGGAGAACAAAGACTGCTGATGAGAGACAAAGCCCAAACACTACTGCTCCAGTAGCACTAGAGGTGGCACAGGAGTATGTAAATGGTTCCTCTGTGATCCCTCTCCCACACTGACAAACTAGATTCCTGAAACCTCCAGTGAACTGAGAGCACAGtccaacatacacacatagaaaACCAacatctcaaagacagcctgactCTTGTTCTGTCAGACGCCCCACCAATCCTGGATCAAGGCTCTTCTGGGACACATCCTTTGGGAGGTGGGACTCACTCAAACTCATCCCAGGCAAAGTGACTGTAACAGTGCTGAAATCAGAAGGAGGCTCCCTCATGAACTCGGCTCCAAGTTCACCTCCCACCTAGCCAGTGAAGCTACAGATGCCCTGCCCCAGTAGCACAGCTCCTGCCTTTAGGCCCCATCAATAGGATCAGCAGCCACTCAGCACTTTCCTGAGGGGACACACACCCCCTAAAAACCCAGCAACACACATAGGATGAGGATGTGCACACTCtcttatgttttattttcctaTAAGCTGACGGGACTTTGATAAGTGCCTGTATCTAAAAACCCACAGCCCTGGTGTGACATGGAAGAGAGCAAAGAAAGGAGAGGACTGCTACGAGTAATCCATCTTTAACTCATGAAACCCTTGTAAAGTTTGGCAGATATTGAAAAATcacgggggggaaaaaaggaaagTGTGTCTCTGAGCATGAATAGTGGGGCTGTTGGGTGTTGTCTAACTGACTCTTAAACCTGGCCCACTCCACTCAGGGAAGCCTATTGCTGTATGTTTATTGGattcatgcacacaaacacacacaagcaaaaaaaaaacagccaacaGTGAAGGGGACTCACAGTGAAAGCATTGCTTATGGACACTTAACAATGTTCACTGTGACGCAAGActcaacacacattcacatttacACATCCACAGACTTTGACTCTGGCACACTGTTCTCTCAGAGCTTTTGACTTTTATATAaccttctttctgtctctcctgtCCTGCCCCTCTTTCTCTTGCGGACCACCTGTGGAAAGATCATGACTCCACTCACAGAAATAATTTCAACCCCAgggagatgtgaggagaggaaaagagaagaatgaAGAAGTACTTCAGCGTAGAGAAAGGACTGCTGAGGGGACCACAAGGGGAAGGCAGCAGGGGGAGGAAGGATTTGAGGGGTTCAAGTAACTGTTAACTAGCCTTCTCACTTCACCTAACATGGCTTGTACACTGAAAATAGTTTCTCTTAAGTCCCAGCAGCACAGAATCCTCGTTCACCAGCTGAAGCTcctctaacaatcatagatagtgTTAAACTAAAccagcaaaaacacacacacacacacacacacacacacacacacactgcctctCTATGCCTTGTTTTTATAGCATGTACAAAAGTGCAAACTGAGCtctaataacacacacatacagactataTCTTTATATATTCTAAATGAAATTATTAAGAAAGTGAGATTTTAAGAAGAACGAAAGCATTTTAATGATATGattgatttacatttttttgtaagtGAATTATTTTGAATGGTAAGACATGTCATGCCACTCACTGGGTAATATGGTATGGAGATGGGGTGGGCAGAATGAAGCGGGGTGGGGGTCCGGGTTCTTCTTGTAAATTTGTCTTATAGAAAAACAAGCCAGAGAAGAACAGCACAGGCCAGTCTACCAGAACAAGACCAGctagaaaaggaaaaaacaggACTCAAACAGACTGCTAATGATTCAGATGTGTGGTTCACTCTGCTGTTCACTTCATTTGCAGTAGCTTGCCCTTTCCGCAACACTCTGCTCTTTCCTGTCTGTACAGTCTCGCTCAGCTCAGTGGGGTTCTCCCCAACCCAAGCTGTCCTGGCCCCAGgccacctctgtgtgtgtgtgggtgtgctcATAGTTAGCTCGTGGATTATAAAGAAGTAATCCTTTCCTGTCTTTTAGGCCAGTTAGCATAATGCTTCAAAGTTCACAGCAGCTCTGGATTGGGAGTAAAGGGGTTCATCATTACTGTAAGATAGCCTGGAAATGGGAGGCCCTGTCTTTAAAGGCCCTCTCCTCAAACTATGCACATCAAATTATTATACTTgtgattatgttttaacatcctGGAACTTTTCGTCTCTGCGGCAAGTACATCCAGGCGTCTGATTGGTTAACTGAGCCATGTTGACCAGTGGCCGGTCCCTGCCTGACAAGCGACAAGACGGATCTATAGCAGCAAACTGTGAGATAGATGGCCTCCAGGCTGTCTGTGTAGCTGAGCTGATTGAATTTCCTCATCAGACCCCTGTGGTCTGGACTGGAGCATGTCAcaacacgcgcacacgcacgcacacacacacacacacacacacacacacacacacaccaagtccTGTGTCTGTATTTAAACTGACAGCTGCCTTATTACTACTTTTCATATCTCAGCAACAGATGAGACATCAGTCTTACCTGCTCtgcactctttctctcttttttctgtttaatTTTTCCTCACTCTGTTTGAGGCATTGTCTGACTTCCTGCAAATTGCGGCGTGATCTGAGTCAGTCATGATATTGCAGGGTGAAACGATTGATTGTAACGCAGACTCTCTCACATCCTGTTTCAGGCTCTACAGTCAAAGAACGGTAGATAAACAGCACAAAGATTACATTTCTCTATCAAAAGAAAGGTTTCTCAGTTTATTTTTCTGATGTCAATATTGCTATTGATTATTGTTGTTAATATTGTTCTCATTGGGTTATTTACCTCTCCACCtggcattattattattccatGGCTCTGTTAGCTGTTGCTTTTTTATGTTGTGTTGCATCACTTTGGATGATGTGGAATCCCCCCAAACTTTCCCTGTTTCAAACCTTTCAAAGCCCCCAACCAGAGACCTTTTTCTTGTCTTTAGTTTTTACAAATGTAATATAACTAAAATGTGTAATATTAATTTTGATGCTGACAGAGAAATAACATCAGGACTGAGAGGAAATGGCAGTGGTGGAGGATTATATTTAGGGGCAAAGGGGGAGTGATTTTATCTATTTTGTCATGtattgtaatttttattttataatgttaccttttttttctctctttgcttctgtatattttttcatttgttttggaggggtggggggttgtatcattttaaaagaagaaaaaagatgtGTATTGTTTGACTGTGTATCTTCTCCCTCTTTCAGTCTCTCTTCTTTCGCCTTGTCTCCCTCGAGCAGTTACATAACACTCAGATGGAGAGATGGGAGTTAATACCATGATGTAACATTGAATTTCTCCACTTCtttcgtgtttttttttcaaacttgtaATTAAGCTGTAATCAGGGTTAATTAAAACCGTTTGAAACCCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101229 lncRNA upstream 87531 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA upstream 87531 24520765 ~ 24534169 (+) False dedd1
TU101238 lncRNA upstream 87531 24520765 ~ 24534169 (+) False dedd1
XR_005639731.1 lncRNA upstream 141577 24468835 ~ 24480123 (+) True LOC120562289
TU101425 lncRNA downstream 122944 24800241 ~ 24804853 (+) True G75798
TU101430 lncRNA downstream 145729 24823026 ~ 24824765 (+) True G75803
TU101426 lncRNA downstream 186300 24863597 ~ 24863843 (+) False grik5
TU101431 lncRNA downstream 196707 24874004 ~ 24937218 (+) True G75804
TU101604 lncRNA downstream 438259 25115556 ~ 25115757 (+) True G75941
XM_039806812.1 mRNA upstream 22993 24560065 ~ 24598707 (+) True pou2f2a
XM_039806813.1 mRNA upstream 22993 24560068 ~ 24598707 (+) False pou2f2a
XM_039806814.1 mRNA upstream 23193 24585015 ~ 24598507 (+) False pou2f2a
XM_039805271.1 mRNA upstream 87424 24520735 ~ 24534276 (+) False dedd1
XM_039805272.1 mRNA upstream 87424 24520735 ~ 24534276 (+) False dedd1
XM_039806401.1 mRNA downstream 12003 24689300 ~ 24729988 (+) True cicb
XM_039806402.1 mRNA downstream 12003 24689300 ~ 24729988 (+) False cicb
XM_039806403.1 mRNA downstream 12003 24689300 ~ 24729988 (+) False cicb
XM_039806407.1 mRNA downstream 60234 24737531 ~ 24767436 (+) True gsk3ab
XM_039806680.1 mRNA downstream 94212 24771509 ~ 24791556 (+) False znf574
TU101208 other upstream 184881 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 184930 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 567372 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 589255 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 742285 23873916 ~ 23879415 (+) False LOC120563047
TU101448 other downstream 237957 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 814517 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 825303 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 1462604 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 2130821 26808118 ~ 26815391 (+) True G76315

Expression Profile