RNA id: XM_039805673.1


Basic Information

Item Value
RNA id XM_039805673.1
length 7520
RNA type mRNA
GC content 0.48
exon number 12
gene id mdc1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24309049 ~ 24320416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCCCCGATTATGTTAAAACAAACTCGTATTGCACCCACATTGCAAATTTACATGAGTTAACGTTAATGCGAACAATGTTGCCATGCAGCGGGTGTATTACGGTCATGCCACTTGCTTAATCATGTACACTTAGCTACTTCATAATTTTcaagCAGTCGCCCTGTCTTACTCAGTGTGTGAGAAATGGATGCTACTCAGATGATCTGTGACTCAATCTTGGAGTCAGATGAGGAAGAAAATGAAGAGGAGAATAAAAATAAGAGGGGACGACCATTGGCTAAACTGTGCATCTTAAAAAATGAGCACATCCCTGAGACAGAGTTACCACTCTTCTTGGGAGATAATGTGCTAGGCCGTGACCCCAACACCTGCACCCTGCCGTTGCTAGCACCCTCGATATCCAAGCAGCACGCTACCATCTGCGTCTCTGTCTACAGGAGAAGAGGTTGTCACAGTGAAGTGGACGTAGAGGCTTTGGTTTGGGACCTAGGGAGCATGAATGGGACCCACAAGGGCCGCTTAAAGCTGACTCCTAATGTACGCTATGCCCTCAGTGAACGTGACAGTTTGGTGGTGGCAGACATCCCATGTCAgtatgtcagctgtgctgtagACACAGTCCCTTCTCAAGGGGACATGAGGACTCCTGTAAGCAGAAATTCAGGGGTTAAGGCCCCGTTGCCAGATACCTCAGGAGAAAAGGGAGGTGACACAATCACAGGCAGCAAGAAATGTGTCAACAGAGGTACAAAAACTAGGGTGTCATCACCTGATCAGGAGGACACAAGGAAGACTCCTGTCAGAACCAGTTGCCTGTCCTTTGAGCAAACTCCAACCCAGCCACAGGGGACCCTGGTCCCAGAATCTGGCTCAGACTCagatggagaaagaggagaCAGGAGGCGCAAGACTCTGGTGTCTGATTCTGACTCCTTTAAATCAAGTCCCACATGTTCAACATTACTGAGTCCCCCAAACAAAATCGTGCCTGAAAGTGAGGATGAAAGTCCCATCACACCGTCCtcctccactaaaaataggccTTACAGACATGTCAGCTTCAGCAAGGAGGAGACAGACTTAGATGTGGGGCGACAGCAGGCGATGAAAAAAAAGGCACTTGTGGTTGTGGATGAcagtgaagaggaggaagaaagggaagaagaaagagcagCACTCGGAGGGAGAAAGTCTGACGAAAGTGGACAGCATGTGCCAGTGAAACAGGAAAGCAATGTCAGTCTTACAGGAAAAGATGAATTGCCTGTATCCACACCATCAATCTTCACAGATGCGATCCCTGCATTTCACATGGACAGTGACACTGATATAGAGGGAGAGGAGGTAGGAGTGGCCTCTGTGGGTCCTGTGACCATGAATACAAACCAACAAGCTGATCAGCCACCAGACACAGCCCAGCTTCACATGGACAGTGATACAGATGTCGATGAAGATGATTATGCCTCAGACAAAGTTCCCAAATCTGTGCCTTCCTCTGCTGACCACACCAACCCTCCTCATGTAATTTCAGTTATTCAGCCAGAGGGCATCACTATGGACAGTGACACTGATGTGGATGATGACGATGCTCCTGTGTCAGACGCTGCCACAAAAGCAAAACCCACATCAattcagagcacacacacagctgactcTGCTCCTTCAACGCAGCTGAAAGATTTCCACCTAGACAGTGACACAGATGTTGAcgaggaagaagaaaagaaatgtgGAACAAATAATACGTGCTCTAAAATAGATGAAACTCCCACTAGATTAGATATCGTGCCACTTGGGCCTGAATCCACCCCTCCTGCGCCTCACAGCCTGCATCCAGACAGTGACACAGATGATGAAGCTATTCCTGCCCCTGCCATCAGTGAACCCTCGATGGTGTCTGCTGTCACAGAATCATGCGCCGCTGCAGACGCAGGAGCTGAATTGGGTATTTTGTCTGACAGCGACACAGATGTGGAAGACggctctcctctgctctctctaCCTGTTGCTGTCCCAGCCTTGTCAGTGGGTCCTGGTACCACATCAGAAGCTCTTCAGTCAGAGTCGGAAGCAGACACCGATGTTAATCCAGATGACCTCAGAGTGGACAGTGACACAGATGTGGAAGATGAGAAGGTGGATTTTGGAGAGGCTTGTGAGGGCCAGATTCCTAGCTTGCCCAGAGAAAATACACCTGGGTTTCTGGTTCCTCTTAAGCAGAACTGCTCCACTCCTATACAGGTGTCAGAAGGAGAAGTGGAAGACATGGAGACTCAGGCTTTCCTTAGTCCCTCCACAGGTCCATTTAGACGTGCGGTAGCCCCTGCTATAAGACCTATACCATTGTCTACTGTCTCAGACAGCCAGGAGGATGAGGAATTTGTCGTGGCTGAGACACAGTCCTTCGTTCTTCAGACCAGAGACTGCCAGGCCAACCGTCCAGAGGACCACACCATGGACCCCACCCAAGATTTCGGCCTTGACTCTTCTGGTGATGAACAAGGCGAACAGTCCAGCAGAGGAGGGTCTTTCCAGCTGGGATCGTCTGACAGCAACCACCTGCAGGCTCAGGATCAGGCCCAAGCTCTAGCAATGGCGAGCACCCAAGCTTTTGTCTCTGTGGTGGGGGGTGTGAATCTGGAAGATACCCAAGAATATGCAGCCATCTCAAATGCAGACAGAACCTCCATGCAGAATGATTTAAATCTGGAGGCTACGCAGGCCTATGGAGAGAATGAGGAACCTGCCCGATGTTCAGTCATGTCTGTTAAAGAAGGTCAGTTAGATTTGGCCCTAGAAGCAACACAGGCATATCTTTTAGAGCCCTCCAGTGATTCAGGGGATGAAACCGATGaagatgaaagaaaaaacactgctaCTGCTGAGACTCAGGCTTTCGACTTTCCTACTTCATCTACTCTCGCCATGGCTAAAACCCAACCAATGTCTGCCTTTGAGGAGGAGAGTTTGGATAAAGAAAATCCTATTTCCTCTGTACTAGAAGTTAAGCCCACACCACATAATGGAACAGATGAGAGGGAAGAACATGGGGAGGCAGCTCAACCTCAGAAGAGCCACCTCAGTGAAGCTCTGTCTCTAGCTGAAACTCAGCCAATGCGTATAAGTGACGATGAAGAAAGTGATGATGAGGACTTGATTCCAGGTCCACGAATAAGAAAAGCAAAGCCACTGCAGCTTGGAGAGGAGCAGACACAAACTCTCCCAAACTCTGAGCTCTCTGCTATTGAAACTCAGCCCATGGGTACATGCGACGGTGAGCAAAGTGATGAAGAAGACTCAAGTCCAGGTCCTAGAAAAAGACCAGCAAAGCCTCAGCAAATTCAAGAAGAGGAGACACAACCGCTAACTAATTCTGAGTCCTCCACTGTTGAAACTCAGCCCTTGGAAACAAAAATGGGTCTGCAGCCTCAGAGGGGAAAGGGGAGACAATCTGAAGTTGGAACCAGTGGCACCACTATTAGAGGTACACGAGGGACGAGGGCAAGATTAAGAGAAGCGGAGGAGCAGGCAGAGTGTTCCGAACCTCCCAAGAGACAGACACGAGGGAAGAATAAAGCTTTGCCAACTaccagaggaaggagaggaaaagcGAGGCctgatgaggaggagagtgaggaagaggaggagatagTGCAGGCTAAAGGAGCTGGAGGAAAAAAATCCAAGAGGGAACAGAAAGATAATGAGGATAAGGAAGAAAGGCTTGAAACGGGGAGAAACAAGCACACTGAAAAAGCCAACCTAatgaaggaagaagaagaaaggagggGAGCCAAAttagaaagggaaagaaaagagaaggaagaaaaagaaagatcgCAGGCTAAAATTGCAGAAAGGTTAAGACTTGAGCGGGAGAAAGCAGAAAAAGATAGAATAGACAGTGAAAGAAAGGAACAAGAAGACAAGAAAAAAGCTGATAAGgcacaaaaggaaaaagaagaacaatTGGGCAGGGAAAGAAAggagaaggaagaaaaagagagattaGAGCATGAAAAggcagaaagagaagagaaggagagattggagaggaaagagaggctagaaaaggaaagaaaggaacAAGAAGAGCAAGAAAGATTACAGGCTATAATTGCAGAAAGGGTAAGACTTGTGCAGGAGGCAGCAGAAAAAGATAGAATAGACAGGGAAAGAAAGGAACAAGAAGAGCAAGAAAGATTGCAGGCTATAATTGCAGAAAGGGTAAAACTTGTGCAGGAGGCAGCAGAAAAAGATAGAATAGACAGGGAAAGAAAGGAACAAGAAGAAAAGAATAAAGCTGATAAGgcacaaaaggaaaaagaagaacaatTGGGCAGGGAAAGAAAGGAGaaggaagaaaaggagagatTAGAGTGTGAAAAggcagaaagagaagagaaggagagattggagagggaaaaagagaggatagaaaaaagaaaggaaaaagaaagctTGCAGATGGCAAAGAGGGAACAAGAAGAGAGACttgagagggagaggaaggacaAAGAACACCAGGCGAGACTGGAGAGGGAAGCAACGGAAAGGGAAGAACGAGAAAGattggagaaagaaaaagagcaagAAGAAAACAAGCCCAAAACACCCACAAGAAGTCGAAGAGCAGCCAGAACAACTGCTGCCCCCTGTACAACCGAGCCGGAACAAGACTCCACCGTATCAGCCAATGATGATGTCCCAGCGAGGAGAACCAGATCTCGCTCTAACTCCTCCAACTCGGTCAGCTCAGAGAGGTCTGCTTCAAGTGTGAACACCCAGGGGAGCAGGGGGAGAGGCCGAGGCCGAGGAGCAAAGAGGACCAGTGGGCCACCCCAGGCAGCCATCGTCCGAAGCAGCAATAGAAGGAGGACGGTGGCTGCAGAGGCAACACGAGTAACAAGTAATGTGGTTTTTCCTCAGGGAGTCCGTTCTAGGTCTAACTCCACCAACTCAGAGATTTCCAGCTGCAGCGTGAGCTCTCagggcagaggaagaggaggcatgCAGCATGGCAGAGGCAGGAAAACAGAAGCAGAGCCACACTCCATCCCTCCTGTCAATAGTCTGAGTGAACCGAATTTGTCTCCCAAACCTACAGCCAAGGGCAGGAAGAGCAGGAAAACAGAGGAATCCTCTAATGAGGTTCCCCATGAGGATGAAAATGAGAAGGCAGACTCTCAGCAGGCTAGTACCACAAGAGGGCGACGGCGAGCCAAGGAAAACCGCTCTGAACCTGCTGCTGCAGATGAGCAAGGGCCTTCTAATCAGGAGGAGAGATGTGCCAGTGAAGATTCACCTCCGCCTAAAAGGAATTTCAGAGGCCAAAAAGCGTTCAAGAGCGAGACTGTGGAGGCACCAGTAACTCCTGCAATCAGTGATGGAGATGAGgctaaagacaaaagaaaaggaagaaaaagagagttGCAGGTGAATAAAGAAGAGGATTCCAGCAGTAGCTCCAAAGTGTTGAAAGGGAAGGAGAAAGCCCAAACACCAGAGGCAGCAGAGGAAGAAGCAAATGGTGAAACAAAAGATGACATTCCAGTCCAAGCTAAAAGAAGAGGTAGAGCATCCAGCACTCAAGCGAAGAAAAACGCAAAAGATTCCCCCACTGAAGGGCAGGTGAAAGAAGAGAGTGAGAAAATGGAGGAGGAGACTGTTGAGAGGAGAGGCAAAGGTCGGCCATCAATGGtccagaaaaagaagaaagaggagcaGGGAGAAAGTGGAACATCTGTTGAACAGGATCCACATGTGGAGGCATCAGAGCCCCAGACTCCAGCCAGCAGTGGATCCCGGAAGCGACAGGCTCCTGTGGACTCCTCACCTGTGGCAAAGACCCCTCGCTCCTCCTCTGCGTCCCCGGCAGCTAGTGGTCGATTACGAGCTGCCAGCCAGGACTACAAGGTGCTGTTCACCGGCGTGGTGGATGAAGTAGGGGAGAGAGTGTTGGCACGGTTGGGAGGCAGCATGGCTAAAGGTGTGGCAGACATGAACTGTCTGGTGACTGATAAGGTGCGCAGGACTGTCAAGTTCCTGTGTGCCGTGGCTAAAGGAGTTCCCATTGTCACTACACACTGGCTGGAAAAGAGTGGTAAGGCTGGGAGCTTCCTGTCTCCTAATGCTTTCGTTGTGAAGgacctggagcaggaaaagaagTTAAATTTCTGCCTACAGGAGTCTCTAAGGATTGCCAGCAGTCAGTCTCTCTTACAGGGCTATGAGATCCATGTTACAAAGTCCGTGAAACCAGAGCCAGTTCATATGAAAGACATAATCTCTTGCAGTGGAGCTACCTTTCTTCCTAAAATGCCCTCTTCTCACAAGCCTCAGACTGTAGTTATTTCCTGCGAGGAGGACTGGCTGCTGTGTACCCCGGCTCTCTCTGCATCTCTCCCAGTCGTCACGGCTGAGTTTATTCTCACAGGGATCCTTCAGCAGAAAGTTGACCTTCAGACCCACACACTCTCTGCCCCTAGAAATACTCTACAGCCTGCAGGAGGCCGGGGGAGGGGCAGAAAGAAGACTTAGCACCACCAGGGTATACTGTAAAAACCTGTCGTCTGTGAAAATCTGCCACAGTGGGGTTTTTCCATCGCTTATAGATTCCCTTTCAAATTAGAGACCGGTACAAACACTAGTGAGTCAGCTAGTGTAAGAATGTATTGTAACACATTATGGATGTATTAGCATGGATGCAGTTTTACAGtgttagctgttttttttttcttcaattttacCTTTTGCCTTGTACATGTaaaaatttagtttttaaagttgcAAAAGCTAAACGCGATGTTGCTGCTGATCAGGGTGGGGAAGAATTACCCATCAACCTTCCTTGTCCTGTCCTCATTTCATTCTCCTCTGTGCTCCACCCCTCTCTTTCTACAACGATAACAAGCAGAGCAGGAATTTACACTGCTAAATTGGTGCTACTCTCTAATGTGCTTTGGCTAAATCAGCCAGTTTGGCAGGAAACCAGAAGTGAAGTGTGAGTTGTATAATCATGTTTGGGTGGTTGAATAGTGGAACCGACCGGGGTCTGACTTGAAATGCATCTGCTGCGATGGTCAGTGGATGCAAAGAGCTTGTCTCCTGTCCTGATAAGAAGTGCatagtgcctttttttttttaccgagGTAATCACGAACCTACGAGTGTTTCTTGTTCCTCTGTCTCCATTAACCACCACCACGTACTCCATTAAGGCTTCATATATAGGAACCTGAATGCTGATGCTGCTTTTACATCAATATCTTATGgtcatacatttatttattgtttgtctatACATGCTGTTAAAAAAGACCAGTGTACAGAACTCAGATTTGGTTTCTCTCCTGACCCACAGTACATCTTTCAACTACCTGtattgtttggtgttttaaagatGACTCATTAGCTTGTAACCAAGTTATACATCTCAACACCAAGTTGTACCTAGTATCAAATCATGAAATCTGTCAGTTACCAATGAAAACATTAAATCTTTTCTATTATGCTTAa

Function

GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101174 lncRNA upstream 12442 24295838 ~ 24296723 (+) True G75622
TU101154 lncRNA upstream 92596 24216140 ~ 24216569 (+) True G75611
TU101108 lncRNA upstream 184084 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 187156 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 235521 24073389 ~ 24073644 (+) False lpcat3
XR_005639733.1 lncRNA downstream 148418 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 148419 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 148419 24468835 ~ 24472842 (+) False LOC120562289
TU101229 lncRNA downstream 200349 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA downstream 200349 24520765 ~ 24534169 (+) False dedd1
XM_039805680.1 mRNA upstream 1585 24302838 ~ 24307580 (+) True tubb5
XM_039805676.1 mRNA upstream 16679 24253203 ~ 24292486 (+) True ddr1
XM_039805682.1 mRNA downstream 886 24321302 ~ 24335701 (+) True si:dkeyp-77h1.4
XM_039805687.1 mRNA downstream 21621 24342037 ~ 24345944 (+) True ino80e
XM_039805685.1 mRNA downstream 21621 24342037 ~ 24345722 (+) False ino80e
XM_039805686.1 mRNA downstream 21788 24342204 ~ 24345722 (+) False ino80e
XM_039805662.1 mRNA downstream 31152 24351568 ~ 24365583 (+) True vars1
XR_005639925.1 other upstream 254837 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 276720 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 429750 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 540588 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 541698 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 114723 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 114723 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 594838 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1171398 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1182184 25502600 ~ 25504052 (+) True apoc2

Expression Profile