RNA id: XM_039805678.1


Basic Information

Item Value
RNA id XM_039805678.1
length 5466
RNA type mRNA
GC content 0.50
exon number 20
gene id ddr1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24253203 ~ 24292486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAACTGCTCCAGAGCAGCGTTTGGATTATTCAGTGGACGCGTGTTGTTCAGGACAAAACACAGCTTTACTTCGTCTAACACAGACTTCATCTCAAAGTTTGGACTCTCTGTCAACAAACTTCTGCGTGTCTTTTAGCAAAAGTAGGGGCATAAAGTGAGGAGGAGCCCTGAGCGTGTGTACACAGTCCCTCACAGCAAACTCAGGTCTTCTGGAGCGCTGTCTGATGGGCATCTGGCTGCTAAGTCTCCCACAGCATCCCACGAGAGCCGTTGGCCCTGCATAGCTGCTTTTCCTCAGCTGTGCAGtccagcagagaggagacacaGAATATATTAATTAGTTGGATTGAACAGTTATGTATGCCTGGGGACATCATTGCGTCCCTGGACAGGTAACCAGGTGTGTCGCTGCTGTCATGGCCTTGCCAACCCTGCGGCTGTTTCCGGTCACTGTGGTCACAGTCCTGGTGGCACTGGTGTCGTCTTCAGGGGATCATGAGTGGCACTTTAACCCAGCTCAGTGTCGTTACGCCTTGGGGATGGAGGATGGCACCATCCCAGACTCTGACATCACTGCCTCCAGCGCCTGGTCAGACTCCACTGAGGCCAAACATGGAAGGTTGAGTACTGGAGAGGGGGATGGAGCGTGGTGTCCTGCAGGAGCCGTTTTCCCCAGTGGATCAGAATACCTTCAGGTAGACCTGCACAAACTCCACTTCCTGGCTCTGGTTGGTACCCAGGGTCGTCATGCTGACGGGCATGGGCAGGAATTTGCTCGCAGTTATCGGCTCCGCTATTCCCGAGACGGAGTGAAATGGATCACCTGGAAGGACCGCTGGGGCCAGGAAGTGGTGTCAGGGAATGAGAACACCTACGATGTTGTTCTGAAAGACCTGGGCCCTCCCATAGTGGCCCGCATGGTGCGCTTCTACCCCCTGGCTGACCGGGTTATGAGTGTTTGCCTTCGAGTGGAGCTCTATGGTTGTGTATGGaatgATGGGTTGAAGGCTTACACCGCTCCACTGGGTCACATCATGCACCTGTCTGGCATATCTGGCATGCCTGTCTATCTTAACGACTCCACCTACGATGGGAGCACTGAGCAAGGGATGCAGTTTGGAGGCTTGGGTCAGCTGTGTGACGGAGTCCTAGGAGGAGATGACTTCATACAAACTAAAGAGCTGAGGGTGTGGCCTGGGTATGACTACCTGGGTTGGAGCCGGGAAGCCCTTGGGCAAGGCAGCGTGGATGTTGAGTTCCACTTTGAGAAACCACGTGTCTTCCGCAACATGCAGGTGCACAGTAACAACCGCCACACTCAGGGTGTACGAGTCTTCAGTAAGGTAGAGTGTCTTTTTAAGCCTGGCATCCTCCAGCCCTGGTCCCCTGAACTCACTCTGCCTGTGCCACTTGAGGATCTGAAGGACCCTTCCTCACGACCCATCTCCCTCCCACTGGGCGGCCGGCCAGCTCAGATCCTTCGCTGCAAATTCTACTTTGCTGACCGCTGGCTCCTCATCAGCGAGATATCCTTCCTCTCTGAGCCGTTTGAGCAGGATGTCACAGAGATTGATTCATTTCCCAAGATCCCTACCACCACTTCCTCTCCTCGTCCTGTCAACCAaacctcctcctctcccacGTTGAGCCACAGCTCCTCCAATGCTACCGCCGGCCCATCTGATGCAGAATTTGGTGCAAACACTCCCAGGGCGGGGCTTCCTGTAGCCAAGGATGACAGCAGTAATACAgctattctgattggctgcctgGTGGGCATCATCCTTCTGCTGCTGGCTGTGATAGCGGTCATCTTGTGGAGGCAGTACTGGAAAAAGATACTGGGCAAGGCCCAGGGTAGTCTATCCAGTAATGAGCTGCGGGTTCACCTGTCCGTCCCCTCGGACAACGTGGTCATCAACAACACTCACAGCTACTCGAGCCGCTACCAGCGCATCCACACTTTCCCTGACGACCGCGACCACGACAGAGAGGGTGAAGGAGAGTACCAAGAGCCCAGTGCTCTGCTACGACCAAGGGATCACAGAGACAGCACAGCCTTGCTGTTAAACAACCCAGCCTATCACCTGCTTCTGTCAGATCACAGAAAAGGCTTGAGGTCCCTAGTCGTCCCCAGCACCACTCAGGCTCAGGAAAAGAGCCTCAATGTGCCCCAGGCCTGTGGTTTGGACATGGAGAAGGGTTTCCCCCTGACTCAAGAGGAGCCTCCTCCCTACCCTGGCTCTCCTCCTTACCCCTCCCTGTCTCCCCCCGTGTCTCCCCCACTGCCTCCCAGTGTCCCTCATTACGCTGAGGCAGACATTGTGAGTCTGCAGGGTGTCAGCGGTAACAACACCTACGCTGTGCCCGCCTTGGCCTCCTCAAGCCCCGGGGCCGACGCCACCCCGCTGCCGGAGCTGCCGCGCCAGTGTCTCATCTTCAAGGAGAAGCTAGGAGAGGGACAGTTTGGAGAGGTGCACCTGTGTGAAATCGAGAACCCTCAAGACCTTCCCAACttggagttcccctttaatgtGAGAAAAGGTCGCCCTCTTCTGGTAGCAGTGAAGATCCTGCGCCCGGATGCCTCCAAGAATGCCAGGAACGACTTCCTGAAAGAGGTGAAGATCCTGTCTCGCCTAAAGGACCCGAACATTATCCATCTGCtaggagtgtgtgtgagcagtGATCCCCTCTGTATGGTTACGGAGTACATGGAATGTGGAGATTTGAACCAGTATCTGTCCCACAGAGTGCTTCTGGACAAAACAGGGCCTTCACACAACACTCCAACCATCAGTTACCCGGCACTCATCTCCATGGCCAGCCAGATTGCGTCAGGCATGAAGTTCCTCTCTTCCCTTAACTTTGTGCACCGGGATCTGGCCACACGTAACTGTCTGGTCGGGGGTGAGAGGGGTGAGAGTGGAGAGGATCAGGGCGGTGAGCGTCACATCAAGATAGCTGACTTTGGCATGAGCAGGAACTTGTATGCTGGAGACTACTACAGGATCCAGGGCAGAGCTGTGCTGCCAATACGCTGGATGGCCTGGGAGTGTATACTCATGGGTAAGTTCACCACGGCCAGCGATGTGTGGGCGTTTGGGGTCACTCTGTGGGAGATGCTAAGCGTTTGTCAGGAGCAGCCGTACTCCAACCTCACAGATGAACAAGTCATCGACAACGCTGGGGAGTTCTTCAGAGACCAGGGCAGACAGgTGTATCTGAGCAGGCCGGCTGTGTGTCCTCAGGGTCTCTACGAGCTCATGTTGAGCTGCTGGTACAGAGACTGCAAGCTCCGCCCGCCCTTCGACGACATCCACTCCTTTCTTACCGAGGACGCCATGAACATGGTGTAAAGAGAGAAACGCAACAAAGATGGAGGCAACGCTAAAGAGGGGAACCGTCTTTTACGTTTTATGCATCCTTGCTACAGTGCCAAGGTGTGGTGGAGGGGCTGCACAGCAGAGGCAGATGAGAAGGGAGACTGGGTTGCTCGCTtttatatttgtacttttttggGTGAAGGGGGCTGAGACACCGCTGGTTCGGTTTATTTCCACATCAGACCCCCAACCCCAAAGGCAAAACTAACCCCAGCTTAGACGGGTAACAGTCGGAGCTATATTTCACGGGTGGTTGGTGGTGGGTGCAGTCTGCATAGGAACATTCTTTCTTCTCAGATACTTTAACATACAAGCAGGGTTTGTGTGACTGGTGATTAAGTGCTGTAGAGTTAATGACGCAGGAAGCTGCagagatttaataaaataaaatactccAAACAATGACCATAGCAAGCTAGGACATGAACAATTATTAAGTTTCATGACTTTAATTTATCCATCTCAAATGCTACACGGGGGTAACGGGTGGAGGTGCACACGGCACACAAACTTCTCTGAACAGCACACCTATCGTTCAGACATCAAAGTGCACACACAGGGATTGTCTTAGTATTTATAGTATGTATAACTTTCTGTGCACATTTTAATCAGTCTAAATCAGTAAGATTACTCCACGCTTCTGCCCCTTTTGCCCATCTGAGATGCAAAAAAAATGATAATCCATTAAAAGTCTATGAAAGGATTTTAACTTTCAGACATGACTGATGGCTTTCTAGAACATGAGTGATATGTCCTCTCACCGTGTTTCTTGACCCTTTAACAATCCTCTATCTCAAACCCAAAACCTTACATAGTGGCCCCATCCACAGCTGTAAGTTATTGTGGACTAATGTGAAATGATGTGGACAAGACAACAGCAGCCCCCTTTCTGCGATGACGTTTGTTTACCGACCCCCCTTGTAGTCGGAAAGTCCAAGCAGTTTTTGAACCCCATCTTTGAGCCACAGAGACTGTATCCCTGGTGCCAAATAGACTTCTCAAACCTGAGGAAACGGCACAGAAGAGGAGAGTCTGCTGCTGCCGAGGAGACGTGACCCAAAAAATGGAACGGCTTTTCCAAGCAGAGACAATACTGCCAGCCAGAGCAGTGAGCAGGACGGGACATCTTCAGATGTGACTGCTCAGGTGTTTTGGCAATTTTTTTGTATCTGGCTGCGACACAAAGGATAGATGTAAAATTCCACAACCAGCTGCACTTTAAATCCTACATGCATATCCCTGGCCATGATGAAACTCTTCTCTGTGAGGGGCCTGATATGATTCCTGTTGATGTGGATTCTAATGCATTTCACTTGCAGTGATTTCATATTGTTGCCAAGGGAGATCAAAGTCCaggactgtctgtctgtcttgttaaATCCTCCCCCTACAAGGCATTGCCAAACCATGAgatgtaaaatataatttaaaaaatggaaTGGCACCATCAATTAATCTCCTTTTTAAATGTATGACAACCTTTTGTTCGGGGTGTTGAGATGTGATTACTCATCGAATCATTAATTTTTGCTCATCTAAATGCATTACTGTACTCTAAAAACAGTTAATGCATTTCTCAAACTGAATTCTGAGAGTCCTGCTTTCAGTGCGATTGTCAACATTAACCTCTGCATTATCCCACGTTAGTACATTTTGCTGACTGCGGTAGAATCAAAGCTATCTACCTTACTGATTGTATAGCACTGTAAATCAGTCCTGAGATGATCAAGATTATCAAGTAATACATGTATACTGAATGGTTGTGCCATTTGAGTCATTTTTGATACACTGTAGTTCAACTAAAcccatatttttttatatatactgtatgtacttagACGCTCCTTGGTGTTTGATTTTGTCCTTTTGTTTCTTTGAGGTTGAGCATAATAGTATGTACATATTTTAAGGACAGAATTATAATTTTCTTTACTAATATATGGAAAACTCTTTGTTACATTTGGGGTCTTCTGTATCTCTGTAGAACGCTTGCTACCTTGATGCCATTGTAATTCCTGGTCTATTTTTGTAGATGTtttaataaagttaaacttttcaAATAAATTGCTATGTACTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101154 lncRNA upstream 36634 24216140 ~ 24216569 (+) True G75611
TU101108 lncRNA upstream 128122 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 131194 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 179559 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 200247 24048925 ~ 24052956 (+) True G75523
TU101174 lncRNA downstream 3352 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 176348 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 176349 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 176349 24468835 ~ 24472842 (+) False LOC120562289
TU101229 lncRNA downstream 228279 24520765 ~ 24534169 (+) True dedd1
XM_039805108.1 mRNA upstream 9649 24234148 ~ 24243554 (+) True gnl1
XM_039805092.1 mRNA upstream 19781 24225153 ~ 24233422 (+) True znf384b
XM_039805680.1 mRNA downstream 10352 24302838 ~ 24307580 (+) True tubb5
XM_039805672.1 mRNA downstream 16563 24309049 ~ 24320416 (+) False mdc1
XM_039805674.1 mRNA downstream 16657 24309143 ~ 24320416 (+) False mdc1
XM_039805673.1 mRNA downstream 16679 24309165 ~ 24320416 (+) True mdc1
XM_039805675.1 mRNA downstream 16902 24309388 ~ 24319015 (+) False mdc1
XR_005639925.1 other upstream 198875 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 220758 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 373788 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 484626 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 485736 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 142653 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 142653 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 622768 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1199328 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1210114 25502600 ~ 25504052 (+) True apoc2

Expression Profile